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encyclopedia of Rare Disease Annotation for Precision Medicine



   roberts syndrome
  

Disease ID 233
Disease roberts syndrome
Definition
A rare, autosomal recessive inherited syndrome caused by mutations in the ESCO2 gene. It is characterized by limb and facial abnormalities and slow growth. Intellectual impairment occurs in approximately half of the affected individuals.
Synonym
appelt-gerken-lenz syndrome
hypomelia hypotrichosis facial haemangioma syndrome
hypomelia hypotrichosis facial hemangioma syndrome
hypomelia-hypotrichosis-facial haemangioma syndrome
hypomelia-hypotrichosis-facial hemangioma syndrome
long bone deficiencies associated with cleft lip-palate
phocomelia-pseudothalidomide syndrome
pseudothalidomide syndrome
rbs
robert syndrome
robert's syndrome
roberts tetraphocomelia syndrome
roberts-sc phocomelia syndrome
roberts-sc phocomelia syndrome (disorder)
sc phocomelia syndrome
sc pseudothalidomide syndrome
sc syndrome
syndrome robert
tetraphocomelia-cleft palate syndrome
Orphanet
OMIM
DOID
UMLS
C0392475
SNOMED-CT
Comorbidity
UMLS | Disease | Sentences' Count(Total Sentences:6)
C0339204  |  staphyloma  |  2
C0007766  |  intracranial aneurysms  |  1
C0004106  |  astigmatism  |  1
C0007766  |  cranial aneurysm  |  1
C0700594  |  radiculopathy  |  1
C0007766  |  intracranial aneurysm  |  1
Curated Gene
Entrez_id | Symbol | Resource(Total Genes:1)
157570  |  ESCO2  |  CLINVAR;CTD_human;GHR;ORPHANET;UNIPROT
Inferring Gene(Waiting for update.)
Text Mined Gene
Entrez_id | Symbol | Score | Resource(Total Genes:16)
174  |  AFP  |  1.548  |  DISEASES
257  |  ALX3  |  2.522  |  DISEASES
1663  |  DDX11  |  3.456  |  DISEASES
1978  |  EIF4EBP1  |  2.444  |  DISEASES
3619  |  INCENP  |  3.536  |  DISEASES
55384  |  MEG3  |  3.427  |  DISEASES
54820  |  NDE1  |  3.079  |  DISEASES
9939  |  RBM8A  |  4  |  DISEASES
6194  |  RPS6  |  2.103  |  DISEASES
51750  |  RTEL1  |  2.381  |  DISEASES
8243  |  SMC1A  |  4.107  |  DISEASES
8243  |  SMC1A  |  2.718  |  DISEASES
9126  |  SMC3  |  5.546  |  DISEASES
9126  |  SMC3  |  4.222  |  DISEASES
7702  |  ZNF143  |  3.219  |  DISEASES
11130  |  ZWINT  |  3.718  |  DISEASES
Locus
Symbol | Locus(Total Locus:1)
ESCO2  |  8p21.1
Disease ID 233
Disease roberts syndrome
Integrated Phenotype
HPO | Name(Total Integrated Phenotypes:54)
HP:0000639  |  Nystagmus
HP:0000028  |  Cryptorchidism
HP:0001263  |  Global developmental delay
HP:0000470  |  Short neck
HP:0000520  |  Proptosis
HP:0006487  |  Bowing of the long bones
HP:0000568  |  Microphthalmia
HP:0000518  |  Cataract
HP:0009943  |  Complete duplication of thumb phalanx
HP:0000248  |  Brachycephaly
HP:0000592  |  Blue sclerae
HP:0008846  |  Severe intrauterine growth retardation
HP:0000218  |  High palate
HP:0008897  |  Postnatal growth retardation
HP:0001156  |  Brachydactyly syndrome
HP:0007598  |  Bilateral single transverse palmar creases
HP:0000347  |  Micrognathia
HP:0006101  |  Finger syndactyly
HP:0001873  |  Thrombocytopenia
HP:0002564  |  Malformation of the heart and great vessels
HP:0000316  |  Hypertelorism
HP:0000204  |  Cleft upper lip
HP:0001239  |  Wrist flexion contracture
HP:0001561  |  Polyhydramnios
HP:0000040  |  Long penis
HP:0001852  |  Sandal gap
HP:0009829  |  Phocomelia
HP:0005876  |  Progressive flexion contractures
HP:0005011  |  Mesomelic arm shortening
HP:0000175  |  Cleft palate
HP:0002984  |  Hypoplasia of the radius
HP:0000252  |  Microcephaly
HP:0000057  |  Clitoromegaly
HP:0001622  |  Premature birth
HP:0008070  |  Sparse hair
HP:0009623  |  Proximal placement of thumb
HP:0000272  |  Malar flattening
HP:0004209  |  Clinodactyly of the 5th finger
HP:0006443  |  Patellar aplasia
HP:0001249  |  Intellectual disability
HP:0002974  |  Radioulnar synostosis
HP:0009601  |  Aplasia/Hypoplasia of the thumb
HP:0001363  |  Craniosynostosis
HP:0007452  |  Midface capillary hemangioma
HP:0009466  |  Radial deviation of finger
HP:0005048  |  Synostosis of carpal bones
HP:0006380  |  Knee flexion contracture
HP:0000113  |  Polycystic kidney dysplasia
HP:0009891  |  Underdeveloped supraorbital ridges
HP:0002817  |  Abnormality of the upper limb
HP:0008572  |  External ear malformation
HP:0000501  |  Glaucoma
HP:0000387  |  Absent earlobe
HP:0000430  |  Underdeveloped nasal alae
Text Mined Phenotype
HPO | Name | Sentences' Count(Total Phenotypes:6)
HP:0030854  |  Scleral staphyloma  |  2
HP:0000483  |  Astigmatism  |  1
HP:0009829  |  Phocomelia  |  1
HP:0000271  |  Abnormal face  |  1
HP:0004944  |  Cerebral artery aneurysm  |  1
HP:0002617  |  Aneurysmal dilatation  |  1
Disease ID 233
Disease roberts syndrome
Manually Symptom
UMLS  | Name(Total Manually Symptoms:5)
C1959589  |  cavernous angioma
C1442871  |  craniosynostosis
C0410528  |  skeletal dysplasia
C0376293  |  stigmata
C0035412  |  rhabdomyosarcoma
Text Mined Symptom(Waiting for update.)
Manually Genotype(Total Text Mining Genotypes:0)
(Waiting for update.)
Text Mining Genotype(Total Genotypes:0)
(Waiting for update.)
All Snps(Total Genotypes:28)
snpId pubmedId geneId geneSymbol diseaseId sourceId sentence score Year geneSymbol_dbSNP CHROMOSOME POS REF ALT
rs146312522NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827788890GA
rs797045565NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827780206ATTTTAT
rs797045566NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827780223-A
rs80359844NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827776560AT-
rs80359845NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827776602GAGA-
rs80359846NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827776615AAAGA-
rs80359847NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827776616AA-
rs80359848NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827776725-A
rs80359849NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827776813CT
rs80359850NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827776912CT
rs80359851NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827777053GT-
rs80359852NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827777059-A,G
rs80359853NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827777068-A
rs80359854NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827777068A-
rs80359855NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827777072TT-
rs80359856NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827780187ACAG-
rs80359857NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827780191AG-
rs80359858NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827780269TAAG-
rs80359859NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827787982-A,G
rs80359861NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827788003GA
rs80359862NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827788840AG
rs80359863NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827788979GC
rs80359864NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827791968GA
rs80359865NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827792650GA
rs80359866NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827792775AG-
rs80359867NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827799640-T,TG
rs80359868NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827799658TG
rs80359869NA157570ESCO2umls:C0392475CLINVARNA0.483257302NAESCO2827803304AG
GWASdb Annotation(Total Genotypes:0)
(Waiting for update.)
GWASdb Snp Trait(Total Genotypes:0)
(Waiting for update.)
Mapped by lexical matching(Total Items:23)
HP ID HP Name MP ID MP Name Annotation
HP:0009601Aplasia/Hypoplasia of the thumbMP:0012069abnormal horizontal basal cell of olfactory epithelium morphologyany structural anomaly of the flat or angular epithelial cell with condensed nuclei and darkly staining cytoplasm containing numerous intermediate filaments inserted into desmosomes contacting surrounding supporting cells, that lie in contact with the bas
HP:0006101Finger syndactylyMP:0000564syndactylyany degree of webbing or fusion of the digits, may involve only soft tissues or also can include bone
HP:0005048Synostosis of carpal bonesMP:0012528abnormal zone of polarizing activity morphologyany structural anomaly of the subset of cells found in the posterior mesenchyme region of the vertebrate limb bud; Sonic hedgehog (Shh) produced by ZPA represents the key mediator of the polarizing activity that regulates patterning of the limb along the
HP:0002984Hypoplasia of the radiusMP:0010178increased number of Howell-Jolly bodiesabnormal presence of basophilic nuclear remnants of condensed DNA (1 to 2 um in diameter) in circulating erythrocytes, typically seen in severe hemolytic anemias or after splenectomy; these inclusions are normally removed by the spleen but will persist in
HP:0008070Sparse hairMP:0010202focal dorsal hair lossfocal hair loss on the dorsal area of a rodent resulting in dorsal skin visible in a patch where hair loss occurs
HP:0006487Bowing of the long bonesMP:0013621decreased internal diameter of femurreduced cross-sectional distance that extends from one lateral edge of the femur long bone marrow cavity, through its center and to the opposite lateral edge of the bone marrow cavity through the mid point of the femur
HP:0000218High palateMP:0011615submucous cleft palatea cleft of the palate with cardinal signs including a bifid uvula, a V-shaped notch at the back of the hard palate, and/or a translucent line in the midline of the soft palate and a short palate
HP:0004209Clinodactyly of the 5th fingerMP:0011665d-loop transposition of the great arteriescomplete transposition of the great arteries; the d- refers to the dextroposition of the bulboventricular loop (ie, the position of the right ventricle, which is on the right side); in addition, the aorta also tends to be on the right and anterior, and th
HP:0001263Global developmental delayMP:0002084abnormal developmental patterningabnormal systematic arrangement of the developing body along an axis
HP:0008897Postnatal growth retardationMP:0011109lethality throughout fetal growth and development, incomplete penetrancethe appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms between the completion of organogenesis and birth (Mus: E14 to approximately E18.5)
HP:0000175Cleft palateMP:0013550abnormal secondary palate morphology
HP:0008572External ear malformationMP:0006286inner ear hypoplasiaunderdevelopment or reduced size of inner ear structures, usually due to decreased cell number
HP:0009623Proximal placement of thumbMP:0009886failure of palatal shelf elevationthe palatal shelves fail to move from a vertical position in the orofacial cavity to a horizontal apposition above the developing tongue
HP:0009943Complete duplication of thumb phalanxMP:0006241abnormal placement of pupilsabnormal location of the pupil so that it is not in the center of the iris
HP:0009466Radial deviation of fingerMP:0011665d-loop transposition of the great arteriescomplete transposition of the great arteries; the d- refers to the dextroposition of the bulboventricular loop (ie, the position of the right ventricle, which is on the right side); in addition, the aorta also tends to be on the right and anterior, and th
HP:0000113Polycystic kidney dysplasiaMP:0011565kidney papillary hypoplasiaunderdevelopment or reduced size, usually due to a reduced number of cells, of the apex of the renal pyramid that normally projects into a calyx
HP:0000470Short neckMP:0012720elongated neckincreased length of the neck
HP:0002817Abnormality of the upper limbMP:0004686decreased length of long bonesreduced end-to-end length of the several elongated bones of the extremities
HP:0001622Premature birthMP:0009703decreased birth body sizereduction in average body size at birth compared to controls
HP:0000204Cleft upper lipMP:0005170cleft upper lipdefect in the upper lip where the maxillary prominence fails to merge with the merged medial nasal prominences
HP:0002974Radioulnar synostosisMP:0000566synostosisosseous union of two bones that are not normally connected
HP:0000040Long penisMP:0005188small penisreduced size of the organ of copulation and urination in the male
HP:0000430Underdeveloped nasal alaeMP:0004471short nasal bonereduced length of either of two rectangular bone plates forming the bridge of the nose
Mapped by homologous gene(Total Items:52)
HP ID HP Name MP ID MP Name Annotation
HP:0007598Bilateral single transverse palmar creasesMP:0012279wide sternuman increase in the width of the long flat bone of the chest that articulates with the clavicle and first seven rib pairs
HP:0002974Radioulnar synostosisMP:0020039increased bone ossificationincrease in the formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance
HP:0008846Severe intrauterine growth retardationMP:0011094embryonic lethality before implantation, complete penetrancedeath of all organisms of a given genotype in a population between fertilization and implantation (Mus: E0 to less than E4.5)
HP:0008897Postnatal growth retardationMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0009829PhocomeliaMP:0011966abnormal auditory brainstem response waveform shapeany anomaly in the characteristic pattern of electrical activity recording of a series of vertex positive waves generated by neurons in the ascending auditory system, that can be recorded from scalp electrograms by using computer-averaged responses to sho
HP:0000592Blue scleraeMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0001852Sandal gapMP:0020157abnormal behavioral response to alcoholany anomaly in the behavioral response induced by alcohol, such as induced hyperactivity or stereotypic behavior
HP:0000501GlaucomaMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000347MicrognathiaMP:0020321increased vascular endothelial cell apoptosisincrease in the timing or the number of vascular endothelial cells undergoing programmed cell death
HP:0009943Complete duplication of thumb phalanxMP:0014040increased cellular sensitivity to DNA damaging agentsgreater incidence of cell death following exposure to agents that cause DNA damage
HP:0000316HypertelorismMP:0020321increased vascular endothelial cell apoptosisincrease in the timing or the number of vascular endothelial cells undergoing programmed cell death
HP:0001239Wrist flexion contractureMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0001363CraniosynostosisMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0008572External ear malformationMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000518CataractMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0006443Patellar aplasiaMP:0013886increased CD4-negative, CD25-positive NK T cell numberincrease in the number of CD4-negative NK T cells expressing the activation marker CD25
HP:0000204Cleft upper lipMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000028CryptorchidismMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000057ClitoromegalyMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000248BrachycephalyMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0009601Aplasia/Hypoplasia of the thumbMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0009466Radial deviation of fingerMP:0020039increased bone ossificationincrease in the formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance
HP:0001873ThrombocytopeniaMP:0020329decreased capillary densityreduction in the number of capillaries in a given cross-sectional area of a tissue
HP:0006380Knee flexion contractureMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0001156Brachydactyly syndromeMP:0020157abnormal behavioral response to alcoholany anomaly in the behavioral response induced by alcohol, such as induced hyperactivity or stereotypic behavior
HP:0006487Bowing of the long bonesMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0002817Abnormality of the upper limbMP:0013205abnormal nonmotile primary cilium morphologyany structural anomaly of a primary cilium which contains a variable array of axonemal microtubules but does not contain molecular motors; nonmotile primary cilia are found on many different cell types and function as sensory organelles that concentrate a
HP:0006101Finger syndactylyMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000387Absent earlobeMP:0011098embryonic lethality during organogenesis, complete penetrancedeath of all organisms of a given genotype in a population between embryo turning and the completion of organogenesis (Mus: E9-9.5 to less than E14)
HP:0001561PolyhydramniosMP:0020214susceptible to malignant hyperthermiaincreased susceptibility to hyperthermia triggered by exposure to certain drugs used for general anesthesia, specifically the volatile anesthetic agents and the neuromuscular blocking agent, succinylcholine
HP:0001263Global developmental delayMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000568MicrophthalmiaMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000520ProptosisMP:0020321increased vascular endothelial cell apoptosisincrease in the timing or the number of vascular endothelial cells undergoing programmed cell death
HP:0000470Short neckMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000175Cleft palateMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0001622Premature birthMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0001249Intellectual disabilityMP:0020316decreased vascular endothelial cell proliferationdecrease in the expansion rate of any vascular endothelial cell population by cell division
HP:0000113Polycystic kidney dysplasiaMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0007452Midface capillary hemangiomaMP:0012431increased lymphoma incidencegreater than the expected number of neoplasms characterized by a proliferation of malignant lymphocytes in lymphoid tissue in a specific population in a given time period
HP:0000218High palateMP:0020321increased vascular endothelial cell apoptosisincrease in the timing or the number of vascular endothelial cells undergoing programmed cell death
HP:0000639NystagmusMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0009891Underdeveloped supraorbital ridgesMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000430Underdeveloped nasal alaeMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000272Malar flatteningMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0004209Clinodactyly of the 5th fingerMP:0020157abnormal behavioral response to alcoholany anomaly in the behavioral response induced by alcohol, such as induced hyperactivity or stereotypic behavior
HP:0002984Hypoplasia of the radiusMP:0020039increased bone ossificationincrease in the formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance
HP:0005876Progressive flexion contracturesMP:0012010parturition failurethe process of labor and delivery in female animals does not initiate or complete
HP:0008070Sparse hairMP:0014179abnormal blood-retinal barrier functionanomaly in the function of the part of the blood-ocular barrier that consists of cells that are joined tightly together to prevent certain substances from entering the tissue of the retina; the BRB consists of non-fenestrated capillaries of the retinal ci
HP:0009623Proximal placement of thumbMP:0014198absent pituitary infundibular stalkabsence of the apical portion of the tubular structure extending from the hypothalamus to the posterior lobe of the pituitary gland
HP:0005048Synostosis of carpal bonesMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000252MicrocephalyMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000040Long penisMP:0014193decreased epididymal cell proliferationdecrease in the expansion rate of any epididymal cell population by cell division
Disease ID 233
Disease roberts syndrome
Case(Waiting for update.)