pten hamartoma tumor syndrome |
Disease ID | 1793 |
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Disease | pten hamartoma tumor syndrome |
Definition | The primary findings in PHTS include increased risk for certain types of cancer, benign tumors and tumor-like malformations (hamartomas), and neurodevelopmental disorders. The symptoms of PHTS vary greatly from person to person and can develop at any age.Cancer in PHTSPrevious data, which focused only on patients with a clinical diagnosis of Cowden syndrome without understanding whether an underlying PTEN mutation was present estimated lifetime breast cancer risk to be 25-50% and risk for non-medullary thyroid cancer to be 10%. Risks for endometrial (uterine) and renal cell (kidney) cancer were thought to be increased, but an exact risk level was undetermined.Current data focusing on patients known to have PHTS provide the following lifetime risk estimates, with the majority of diagnoses occurring after age 30:·Breast cancer: 85%·Thyroid cancer: 35%·Renal cell cancer: 34%·Endometrial cancer: 28%·Colorectal cancer: 9%·Melanoma: 6%.Benign tumors in PHTSBenign skin or oral lesions are very common and most commonly appear in adulthood. The most common types of benign skin lesions seen in PHTS include:.·Lipomas – benign fatty tumors which can appear just under the skin or elsewhere (breast area, GI tract)·Acral keratosis – rough patches of skin most often seen on the extremities (arms, hands, legs, feet)·Papillomatous skin papules – wart-like lesions which can appear anywhere, with feet and hands commonly being affected·Mucosal papillomas – Benign overgrowth of tissue affecting the tongue, gums, or inside the nose·Trichilemmomas – Benign tumor of the hair follicle·Fibromas – another kind of overgrowth involving the skin and other connective tissue; may also affect tissue covering organs, such as the ovaries.Gastrointestinal polyps are very common in adults with PHTS. Among patients who had undergone endoscopy, 93% were found to have polyps. The kinds of polyps found most often were hyperplastic or hamartomatous, which rarely develop into malignancy; however adenomas, which may develop into a cancer, were also identified. Many polyps were very small and did not cause symptoms to make their presence known such as pain or rectal bleeding.Benign breast, thyroid, and uterine lesions are also common in persons with PHTS. Some women have severe fibrocystic disease or changes which lead to multiple breast biopsies and complications with imaging. Multinodular goiter and Hashimoto’s thyroiditis may develop in children and adults. Uterine fibroids may appear and cause bleeding or discomfort to the extent that hysterectomy is indicated without an underlying cancer diagnosis.Vascular tumors, including hemangiomas, arteriovenous malformations, and developmental venous anomalies, have also been observed in patients with PHTS. Treatment of some lesions has been complicated by tendency for regrowth.A minority of adults develop a rare tumor known as a cerebellar dysplastic gangliocytoma (Lhermitte-Duclos syndrome). Symptoms of Lhermitte-Duclos syndrome include increased intracranial pressure, impaired ability to coordinate voluntary movements (ataxia), and seizures. It is rare when a person with adult-onset Lhermitte-Duclos does not have an underlying PTEN mutation, and observing this tumor type is an automatic indicator of need for PTEN testing.Neurodevelopmental concerns in PHTSMacrocephaly (large head size) is found in 94% measured patients with PHTS and can be a helpful screening tool to identify patients at increased risk for PTEN mutation. In most patients large head size is caused by overgrowth of brain tissue as opposed to hydrocephalus. The head shape also tends to be longer than wide (dolicocephaly).Autism and other developmental disorders, such as mental retardation and developmental delays, have been observed in patients with PHTS. In previous case series, up to 12% of children presenting with macrocephaly and an autism spectrum disorder alone were found to have an underlying PTEN mutation. - NORD Reference: NORD |
Synonym | pten hamartoma tumor syndrome (disorder) pten hamartoma tumour syndrome |
Orphanet | |
UMLS | C1959582 |
Comorbidity | UMLS | Disease | Sentences' Count(Total Sentences:6) |
Curated Gene | Entrez_id | Symbol | Resource(Total Genes:1) |
Inferring Gene | (Waiting for update.) |
Text Mined Gene | (Waiting for update.) |
Locus | (Waiting for update.) |
Disease ID | 1793 |
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Disease | pten hamartoma tumor syndrome |
Integrated Phenotype | HPO | Name(Total Integrated Phenotypes:24) HP:0012740 | Papilloma HP:0012480 | Abnormality of cerebral veins HP:0005987 | Multinodular goiter HP:0045059 | Hyperkeratotic papule HP:0001480 | Freckling HP:0008046 | Abnormality of the retinal vasculature HP:0012032 | Lipoma HP:0012846 | Multiple trichilemmomata HP:0003005 | Ganglioneuroma HP:0012114 | Endometrial carcinoma HP:0005584 | Renal cell carcinoma HP:0010612 | Plantar pits HP:0003003 | Colon cancer HP:0001028 | Hemangioma HP:0000729 | Autistic behavior HP:0002664 | Neoplasm HP:0000256 | Macrocephaly HP:0000077 | Abnormality of the kidney HP:0002597 | Abnormality of the vasculature HP:0001249 | Intellectual disability HP:0002890 | Thyroid carcinoma HP:0200034 | Papule HP:0000854 | Thyroid adenoma HP:0003002 | Breast carcinoma |
Text Mined Phenotype | HPO | Name | Sentences' Count(Total Phenotypes:4) |
Disease ID | 1793 |
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Disease | pten hamartoma tumor syndrome |
Manually Symptom | (Waiting for update.) |
Text Mined Symptom | (Waiting for update.) |
Manually Genotype(Total Manually Genotypes:19) | |||
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Gene | Mutation | DOI | Article Title |
PTEN | c.287C>G (Pro96Arg) | doi:10.1038/gim.2012.51 | Estimate of de novo mutation frequency in probands with PTEN hamartoma tumor syndrome |
PTEN | c.389G>A (Arg130Gln) | doi:10.1038/gim.2012.51 | Estimate of de novo mutation frequency in probands with PTEN hamartoma tumor syndrome |
PTEN | c.44ins16 | doi:10.1038/gim.2012.51 | Estimate of de novo mutation frequency in probands with PTEN hamartoma tumor syndrome |
PTEN | c.734del4 | doi:10.1038/gim.2012.51 | Estimate of de novo mutation frequency in probands with PTEN hamartoma tumor syndrome |
PTEN | c.1003C>T (Arg335Ter) | doi:10.1038/gim.2012.51 | Estimate of de novo mutation frequency in probands with PTEN hamartoma tumor syndrome |
PTEN | c.376G>C (Ala126Pro) | doi:10.1038/gim.2012.51 | Estimate of de novo mutation frequency in probands with PTEN hamartoma tumor syndrome |
PTEN | c.76A>C (Thr26Pro) | doi:10.1038/gim.2012.51 | Estimate of de novo mutation frequency in probands with PTEN hamartoma tumor syndrome |
PTEN | Whole gene deletion | doi:10.1038/gim.2012.51 | Estimate of de novo mutation frequency in probands with PTEN hamartoma tumor syndrome |
PTEN | c.737C>T (Pro246Leu) | doi:10.1038/gim.2012.51 | Estimate of de novo mutation frequency in probands with PTEN hamartoma tumor syndrome |
PTEN | c.486C>G (Asp162Glu) | doi:10.1038/gim.2012.51 | Estimate of de novo mutation frequency in probands with PTEN hamartoma tumor syndrome |
PTEN | c.75G>T (Leu25Phe) | doi:10.1038/gim.2012.51 | Estimate of de novo mutation frequency in probands with PTEN hamartoma tumor syndrome |
PTEN | c.511C>T (Gln171Ter) | doi:10.1038/gim.2012.51 | Estimate of de novo mutation frequency in probands with PTEN hamartoma tumor syndrome |
PTEN | c.420_421insA | doi:10.1038/gim.2012.51 | Estimate of de novo mutation frequency in probands with PTEN hamartoma tumor syndrome |
PTEN | c.401T>G (Met134Arg) | doi:10.1038/gim.2012.51 | Estimate of de novo mutation frequency in probands with PTEN hamartoma tumor syndrome |
PTEN | c.388C>T (Arg130Ter) | doi:10.1038/gim.2012.51 | Estimate of de novo mutation frequency in probands with PTEN hamartoma tumor syndrome |
PTEN | c.209+5G>A | doi:10.1038/gim.2012.51 | Estimate of de novo mutation frequency in probands with PTEN hamartoma tumor syndrome |
PTEN | c.263A>G (Tyr88Cys) | doi:10.1038/gim.2012.51 | Estimate of de novo mutation frequency in probands with PTEN hamartoma tumor syndrome |
PTEN | Duplication of promoter, exon 1 | doi:10.1038/gim.2012.51 | Estimate of de novo mutation frequency in probands with PTEN hamartoma tumor syndrome |
PTEN | - | doi:10.1038/gim.2015.51 | Clinical performance of the CytoScan Dx Assay in diagnosing developmental delay/intellectual disability |
Text Mining Genotype(Total Genotypes:0) | |
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(Waiting for update.) |
All Snps(Total Genotypes:10) | |||||||||||||
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snpId | pubmedId | geneId | geneSymbol | diseaseId | sourceId | sentence | score | Year | geneSymbol_dbSNP | CHROMOSOME | POS | REF | ALT |
rs121909219 | NA | 5728 | PTEN | umls:C1959582 | CLINVAR | NA | 0.125971721 | NA | PTEN | 10 | 87957915 | C | T |
rs121909224 | NA | 5728 | PTEN | umls:C1959582 | CLINVAR | NA | 0.125971721 | NA | PTEN | 10 | 87933147 | C | G,T |
rs121909229 | NA | 5728 | PTEN | umls:C1959582 | CLINVAR | NA | 0.125971721 | NA | PTEN | 10 | 87933148 | G | A,C |
rs121909231 | NA | 5728 | PTEN | umls:C1959582 | CLINVAR | NA | 0.125971721 | NA | PTEN | 10 | 87961095 | C | T |
rs121909241 | NA | 5728 | PTEN | umls:C1959582 | CLINVAR | NA | 0.125971721 | NA | PTEN | 10 | 87933154 | G | A,T |
rs587776673 | NA | 5728 | PTEN | umls:C1959582 | CLINVAR | NA | 0.125971721 | NA | PTEN | 10 | 87952132 | C | - |
rs587781254 | NA | 5728 | PTEN | umls:C1959582 | CLINVAR | NA | 0.125971721 | NA | PTEN | 10 | 87933097 | G | T |
rs587781255 | NA | 5728 | PTEN | umls:C1959582 | CLINVAR | NA | 0.125971721 | NA | PTEN | 10 | 87933138 | G | A |
rs730882131 | NA | 5728 | PTEN | umls:C1959582 | CLINVAR | NA | 0.125971721 | NA | PTEN | 10 | 87957999 | C | T |
rs786204933 | NA | 5728 | PTEN | umls:C1959582 | CLINVAR | NA | 0.125971721 | NA | PTEN | 10 | 87933196 | T | A |
GWASdb Annotation(Total Genotypes:0) | |
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(Waiting for update.) |
GWASdb Snp Trait(Total Genotypes:0) | |
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(Waiting for update.) |
Mapped by lexical matching(Total Items:8) | ||||
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HP ID | HP Name | MP ID | MP Name | Annotation |
HP:0005584 | Renal cell carcinoma | MP:0013774 | decreased KLRG1-positive T-helper cell number | reduction in the number of CD4-positive alpha-beta T-helper cells expressing KLRG1, a marker associated with activation |
HP:0000729 | Autistic behavior | MP:0009848 | increased horizontal stereotypic behavior | increase in the frequency of repetitive rearings (greater than one per second) |
HP:0008046 | Abnormality of the retinal vasculature | MP:0004686 | decreased length of long bones | reduced end-to-end length of the several elongated bones of the extremities |
HP:0012114 | Endometrial carcinoma | MP:0010346 | increased thyroid carcinoma incidence | greater than the expected number of a malignant epithelial neoplasms of the thyroid gland, occurring in a specific population in a given time period |
HP:0000854 | Thyroid adenoma | MP:0003496 | increased thyroid adenoma incidence | greater than the expected number of a benign epithelial neoplasm with a glandular organization arising in the thyroid gland, occurring in a specific population in a given time period |
HP:0002890 | Thyroid carcinoma | MP:0003331 | increased hepatocellular carcinoma incidence | greater than the expected number of a malignant neoplasm arising from liver cells, usually in adults and caused by liver trauma due to disease or injury, occurring in a specific population in a given time period |
HP:0003002 | Breast carcinoma | MP:0010367 | increased spindle cell carcinoma incidence | greater than the expected number of a highly malignant variant of squamous cell carcinoma, occurring in a specific population in a given time period; spindle cell carcinoma shows biphasic proliferation of conventional SCC component and malignant spindle s |
HP:0000077 | Abnormality of the kidney | MP:0011665 | d-loop transposition of the great arteries | complete transposition of the great arteries; the d- refers to the dextroposition of the bulboventricular loop (ie, the position of the right ventricle, which is on the right side); in addition, the aorta also tends to be on the right and anterior, and th |
Mapped by homologous gene(Total Items:19) | ||||
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HP ID | HP Name | MP ID | MP Name | Annotation |
HP:0200034 | Papule | MP:0013745 | abnormal eyelid margin morphology | any structural anomaly of the confluence of the mucosal surface of the conjunctiva, the edge of the orbicularis, and the cutaneous epithelium |
HP:0005987 | Multinodular goiter | MP:0013293 | embryonic lethality prior to tooth bud stage | death prior to the appearance of tooth buds (Mus: E12-E12.5) |
HP:0008046 | Abnormality of the retinal vasculature | MP:0014059 | abnormal photoreceptor connecting cilium morphology | any structural anomaly of the nonmotile primary cilium that has a 9+0 microtubule array and forms the portion of the axoneme traversing the boundary between the retinal photoreceptor inner and outer segments |
HP:0003003 | Colon cancer | MP:0020039 | increased bone ossification | increase in the formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance |
HP:0001028 | Hemangioma | MP:0014171 | increased fatty acid oxidation | increased rate or incidence of the process of removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydr |
HP:0003005 | Ganglioneuroma | MP:0013795 | abnormal colon goblet cell morphology | any structural anomaly of the glandular simple columnar epithelial cell found in the mucosal lining of the colon, whose primary function is to secrete gel-forming mucins, the major components of mucus |
HP:0005584 | Renal cell carcinoma | MP:0020039 | increased bone ossification | increase in the formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance |
HP:0002664 | Neoplasm | MP:0020154 | impaired humoral immune response | impaired response of the immune system that mediates secreted antibodies produced in B cells |
HP:0012114 | Endometrial carcinoma | MP:0014171 | increased fatty acid oxidation | increased rate or incidence of the process of removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydr |
HP:0001249 | Intellectual disability | MP:0020316 | decreased vascular endothelial cell proliferation | decrease in the expansion rate of any vascular endothelial cell population by cell division |
HP:0000256 | Macrocephaly | MP:0020309 | increased creatine kinase activity | increased ability of to catalyze the reaction: ATP + creatine = N-phosphocreatine + ADP + 2 H(+). |
HP:0001480 | Freckling | MP:0013787 | photophobia | abnormal aversion or avoidance behavior in response to light; photophobia is symptom of abnormal intolerance to visual perception of light; as a medical symptom, photophobia is not a morbid fear or phobia, but an experience of discomfort or pain to the e |
HP:0002890 | Thyroid carcinoma | MP:0013618 | decreased areal bone mineral density | reduction of the mineral mass per unit area of bone, the hard, rigid form of connective tissue constituting most of the skeleton of vertebrates and composed chiefly of calcium salts; expressed as the amount of mineral per area cm^2 of bone (usually in g/c |
HP:0000854 | Thyroid adenoma | MP:0014171 | increased fatty acid oxidation | increased rate or incidence of the process of removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydr |
HP:0012032 | Lipoma | MP:0014171 | increased fatty acid oxidation | increased rate or incidence of the process of removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydr |
HP:0003002 | Breast carcinoma | MP:0020039 | increased bone ossification | increase in the formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance |
HP:0000077 | Abnormality of the kidney | MP:0013294 | prenatal lethality prior to heart atrial septation | death prior to the completion of heart atrial septation (Mus: E14.5-15.5) |
HP:0010612 | Plantar pits | MP:0013293 | embryonic lethality prior to tooth bud stage | death prior to the appearance of tooth buds (Mus: E12-E12.5) |
HP:0000729 | Autistic behavior | MP:0020157 | abnormal behavioral response to alcohol | any anomaly in the behavioral response induced by alcohol, such as induced hyperactivity or stereotypic behavior |
Disease ID | 1793 |
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Disease | pten hamartoma tumor syndrome |
Case | (Waiting for update.) |