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eRAM

encyclopedia of Rare Disease Annotation for Precision Medicine



   polydactyly
  

Disease ID 925
Disease polydactyly
Definition
A congenital anomaly of the hand or foot, marked by the presence of supernumerary digits.
Synonym
accessory digit
hyperdactylies
hyperdactyly
polydactylia
polydactylias
polydactylies
polydactylism
polydactylisms
polydactyly (disorder)
polydactyly (disorder) [ambiguous]
polydactyly [disease/finding]
polydactyly nos
polydactyly nos (disorder)
polydactyly, nos
polydactyly, unspecified digits
supernumerary digit
supernumerary digits
supernumerary digits, unspecified
supernumerary digits, unspecified (disorder)
Orphanet
OMIM
DOID
UMLS
C0152427
MeSH
SNOMED-CT
Comorbidity
UMLS | Disease | Sentences' Count(Total Sentences:10)
C0010278  |  craniosynostosis  |  2
C0042870  |  vitamin d defic  |  1
C0008924  |  cleft lip  |  1
C0152095  |  trisomy 13  |  1
C0042870  |  vitamin d deficiency  |  1
C0015625  |  fanconi anemia  |  1
C0002871  |  anemia  |  1
C0008925  |  palatoschisis  |  1
C0431399  |  joubert syndrome  |  1
C0003466  |  imperforate anus  |  1
Curated Gene
Entrez_id | Symbol | Resource(Total Genes:8)
5728  |  PTEN  |  CTD_human
8100  |  IFT88  |  CTD_human
2737  |  GLI3  |  CTD_human
9786  |  KIAA0586  |  CTD_human
145282  |  MIPOL1  |  CTD_human
60529  |  ALX4  |  CTD_human
57560  |  IFT80  |  CTD_human
11127  |  KIF3A  |  CTD_human
Inferring Gene(Waiting for update.)
Text Mined Gene
Entrez_id | Symbol | Score | Resource(Total Genes:141)
65057  |  ACD  |  1.244  |  DISEASES
174  |  AFP  |  1.085  |  DISEASES
257  |  ALX3  |  3.398  |  DISEASES
60529  |  ALX4  |  4.74  |  DISEASES
395  |  ARHGAP6  |  2.064  |  DISEASES
200894  |  ARL13B  |  4.467  |  DISEASES
84100  |  ARL6  |  2.733  |  DISEASES
50807  |  ASAP1  |  1.643  |  DISEASES
92482  |  BBIP1  |  2.97  |  DISEASES
79738  |  BBS10  |  5.221  |  DISEASES
650  |  BMP2  |  2.067  |  DISEASES
26005  |  C2CD3  |  3.685  |  DISEASES
65250  |  C5orf42  |  3.875  |  DISEASES
57545  |  CC2D2A  |  4.941  |  DISEASES
160857  |  CCDC122  |  3.093  |  DISEASES
916  |  CD3E  |  1.232  |  DISEASES
1028  |  CDKN1C  |  1.008  |  DISEASES
80184  |  CEP290  |  4.254  |  DISEASES
55165  |  CEP55  |  1.519  |  DISEASES
9350  |  CER1  |  1.132  |  DISEASES
26586  |  CKAP2  |  1.184  |  DISEASES
54875  |  CNTLN  |  2.928  |  DISEASES
57511  |  COG6  |  1.645  |  DISEASES
1298  |  COL9A2  |  1.247  |  DISEASES
116228  |  COX20  |  2.425  |  DISEASES
9946  |  CRYZL1  |  1.582  |  DISEASES
348180  |  CTU2  |  2.314  |  DISEASES
1717  |  DHCR7  |  3.109  |  DISEASES
81624  |  DIAPH3  |  1.43  |  DISEASES
22943  |  DKK1  |  1.341  |  DISEASES
1741  |  DLG3  |  2.138  |  DISEASES
1761  |  DMRT1  |  1.317  |  DISEASES
120526  |  DNAJC24  |  2.553  |  DISEASES
285381  |  DPH3  |  2.611  |  DISEASES
51611  |  DPH5  |  2.754  |  DISEASES
1804  |  DPP6  |  1.141  |  DISEASES
79659  |  DYNC2H1  |  5.597  |  DISEASES
10682  |  EBP  |  2.822  |  DISEASES
84455  |  EFCAB7  |  2.991  |  DISEASES
8663  |  EIF3C  |  2.357  |  DISEASES
2018  |  EMX2  |  2.353  |  DISEASES
2045  |  EPHA7  |  2.162  |  DISEASES
2049  |  EPHB3  |  1.324  |  DISEASES
2118  |  ETV4  |  1.995  |  DISEASES
132884  |  EVC2  |  5.274  |  DISEASES
23265  |  EXOC7  |  1.872  |  DISEASES
26269  |  FBXO8  |  1.894  |  DISEASES
6468  |  FBXW4  |  2.535  |  DISEASES
2253  |  FGF8  |  4.617  |  DISEASES
2263  |  FGFR2  |  1.474  |  DISEASES
2305  |  FOXM1  |  2.126  |  DISEASES
9573  |  GDF3  |  2.245  |  DISEASES
8200  |  GDF5  |  2.577  |  DISEASES
2736  |  GLI2  |  4.794  |  DISEASES
2737  |  GLI3  |  6.524  |  DISEASES
2764  |  GMFB  |  1.18  |  DISEASES
2719  |  GPC3  |  2.33  |  DISEASES
2239  |  GPC4  |  1.74  |  DISEASES
2262  |  GPC5  |  2.309  |  DISEASES
10082  |  GPC6  |  1.757  |  DISEASES
23426  |  GRIP1  |  1.585  |  DISEASES
9464  |  HAND2  |  3.897  |  DISEASES
3238  |  HOXD12  |  4.258  |  DISEASES
3239  |  HOXD13  |  4.956  |  DISEASES
219844  |  HYLS1  |  4.474  |  DISEASES
9742  |  IFT140  |  2.738  |  DISEASES
11020  |  IFT27  |  2.577  |  DISEASES
51098  |  IFT52  |  4.529  |  DISEASES
80173  |  IFT74  |  2.468  |  DISEASES
8100  |  IFT88  |  2.165  |  DISEASES
3481  |  IGF2  |  2.484  |  DISEASES
56623  |  INPP5E  |  2.869  |  DISEASES
27152  |  INTU  |  2.997  |  DISEASES
23288  |  IQCE  |  3.741  |  DISEASES
11127  |  KIF3A  |  2.224  |  DISEASES
374654  |  KIF7  |  4.249  |  DISEASES
3801  |  KIFC3  |  2.182  |  DISEASES
3831  |  KLC1  |  2.186  |  DISEASES
100144748  |  KLLN  |  1.858  |  DISEASES
167691  |  LCA5  |  1.629  |  DISEASES
64433  |  LINC00244  |  4.162  |  DISEASES
64327  |  LMBR1  |  6.477  |  DISEASES
10161  |  LPAR6  |  1.656  |  DISEASES
51360  |  MBTPS2  |  1.078  |  DISEASES
145282  |  MIPOL1  |  5.07  |  DISEASES
54903  |  MKS1  |  5.385  |  DISEASES
4487  |  MSX1  |  3.576  |  DISEASES
4647  |  MYO7A  |  1.483  |  DISEASES
4649  |  MYO9A  |  2.145  |  DISEASES
8736  |  MYOM1  |  2.191  |  DISEASES
4750  |  NEK1  |  4.443  |  DISEASES
79840  |  NHEJ1  |  1.613  |  DISEASES
579  |  NKX3-2  |  2.557  |  DISEASES
9241  |  NOG  |  1.687  |  DISEASES
27031  |  NPHP3  |  1.46  |  DISEASES
8481  |  OFD1  |  4.393  |  DISEASES
9060  |  PAPSS2  |  1.752  |  DISEASES
84612  |  PARD6B  |  2.455  |  DISEASES
5075  |  PAX1  |  2.272  |  DISEASES
5083  |  PAX9  |  1.047  |  DISEASES
128344  |  PIFO  |  2.141  |  DISEASES
5314  |  PKHD1  |  1.336  |  DISEASES
51450  |  PRRX2  |  2.612  |  DISEASES
5727  |  PTCH1  |  3.679  |  DISEASES
8643  |  PTCH2  |  1.963  |  DISEASES
169714  |  QSOX2  |  2.904  |  DISEASES
51715  |  RAB23  |  2.323  |  DISEASES
64901  |  RANBP17  |  2.282  |  DISEASES
140730  |  RIMS4  |  3.229  |  DISEASES
4920  |  ROR2  |  1.287  |  DISEASES
23322  |  RPGRIP1L  |  2.885  |  DISEASES
10806  |  SDCCAG8  |  3.74  |  DISEASES
4990  |  SIX6  |  1.949  |  DISEASES
6660  |  SOX5  |  1.231  |  DISEASES
55553  |  SOX6  |  2.077  |  DISEASES
27286  |  SRPX2  |  2.568  |  DISEASES
51684  |  SUFU  |  3.179  |  DISEASES
255758  |  TCTEX1D2  |  3.089  |  DISEASES
79600  |  TCTN1  |  2.161  |  DISEASES
51259  |  TMEM216  |  5.31  |  DISEASES
79583  |  TMEM231  |  4.794  |  DISEASES
91147  |  TMEM67  |  5.502  |  DISEASES
26146  |  TRAF3IP1  |  2.814  |  DISEASES
22954  |  TRIM32  |  3.053  |  DISEASES
7227  |  TRPS1  |  1.171  |  DISEASES
8848  |  TSC22D1  |  1.507  |  DISEASES
7106  |  TSPAN4  |  2.106  |  DISEASES
79989  |  TTC26  |  3.279  |  DISEASES
123016  |  TTC8  |  2.425  |  DISEASES
7289  |  TULP3  |  2.231  |  DISEASES
92181  |  UBTD2  |  2.97  |  DISEASES
57728  |  WDR19  |  4.111  |  DISEASES
89891  |  WDR34  |  4.073  |  DISEASES
55112  |  WDR60  |  3.827  |  DISEASES
7477  |  WNT7B  |  2.199  |  DISEASES
7479  |  WNT8B  |  2.874  |  DISEASES
7704  |  ZBTB16  |  2.055  |  DISEASES
23414  |  ZFPM2  |  1.147  |  DISEASES
7546  |  ZIC2  |  2.065  |  DISEASES
10771  |  ZMYND11  |  1.88  |  DISEASES
7694  |  ZNF135  |  1.211  |  DISEASES
Locus(Waiting for update.)
Disease ID 925
Disease polydactyly
Integrated Phenotype(Waiting for update.)
Text Mined Phenotype
HPO | Name | Sentences' Count(Total Phenotypes:48)
HP:0001159  |  Webbed fingers or toes  |  4
HP:0001199  |  Triphalangeal thumb  |  3
HP:0100257  |  Cleft hand  |  2
HP:0100259  |  Postaxial hexadactyly  |  2
HP:0001363  |  Early fusion of cranial sutures  |  2
HP:0002126  |  Polymicrogyria  |  2
HP:0001762  |  Talipes equinovarus  |  2
HP:0100258  |  Polydactyly, preaxial  |  2
HP:0001263  |  Developmental retardation  |  1
HP:0002119  |  Ventricular dilatation  |  1
HP:0009381  |  Hypoplastic fingers  |  1
HP:0002880  |  Respiratory difficulties  |  1
HP:0100512  |  Vitamin D deficiency  |  1
HP:0000776  |  Diaphragmatic hernia  |  1
HP:0011304  |  Wide/broad thumb  |  1
HP:0001360  |  Single brain ventricle  |  1
HP:0100790  |  Hernia  |  1
HP:0000773  |  Rib hypoplasia  |  1
HP:0001795  |  Hyperconvex nail  |  1
HP:0003270  |  Distended abdomen  |  1
HP:0012650  |  Perisylvian polymicrogyria  |  1
HP:0002006  |  Tessier facial cleft  |  1
HP:0001903  |  Anemia  |  1
HP:0009944  |  Notching of thumb phalanges  |  1
HP:0009778  |  Small thumbs  |  1
HP:0000659  |  Peters anomaly  |  1
HP:0000175  |  Palatoschisis  |  1
HP:0030010  |  Hydrometrocolpos  |  1
HP:0006888  |  Meningoencephalocele  |  1
HP:0001171  |  Hand ectrodactyly  |  1
HP:0003510  |  Proportionate dwarfism  |  1
HP:0006695  |  Atrioventricular septal defect, partial  |  1
HP:0000148  |  Vaginal atresia  |  1
HP:0006042  |  Y-shaped metacarpals  |  1
HP:0001156  |  Brachydactyly  |  1
HP:0001999  |  Facial dysmorphism  |  1
HP:0002085  |  Occipital encephalocele  |  1
HP:0008066  |  Skin bullae  |  1
HP:0006870  |  Lobar holoprosencephaly  |  1
HP:0009826  |  limb shortening  |  1
HP:0200037  |  Skin vesicle  |  1
HP:0002251  |  Hirschsprung megacolon  |  1
HP:0030011  |  Imperforate hymen  |  1
HP:0000078  |  Genital abnormalities  |  1
HP:0006988  |  Alobar holoprosencephaly  |  1
HP:0002982  |  Bowed tibia  |  1
HP:0010442  |  Polydactyly  |  1
HP:0012531  |  Pain  |  1
Disease ID 925
Disease polydactyly
Manually Symptom(Waiting for update.)
Text Mined Symptom(Waiting for update.)
Manually Genotype(Total Text Mining Genotypes:0)
(Waiting for update.)
Text Mining Genotype(Total Genotypes:0)
(Waiting for update.)
All Snps(Total Genotypes:1)
snpId pubmedId geneId geneSymbol diseaseId sourceId sentence score Year geneSymbol_dbSNP CHROMOSOME POS REF ALT
rs12191276518252212652BMP4umls:C0152427BeFreeUsing a positional candidate gene approach, we analyzed the BMP4 (Bone Morphogenetic Protein-4) gene and identified a frameshift mutation (c.226del2, p.S76fs104X) that segregated with AM, retinal dystrophy, myopia, brain anomalies, and polydactyly in a family and a nonconservative missense mutation (c.278A-->G, p.E93G) in a highly conserved base in another family.0.0005428842008BMP41453951945TC
GWASdb Annotation(Total Genotypes:0)
(Waiting for update.)
GWASdb Snp Trait(Total Genotypes:0)
(Waiting for update.)
Mapped by lexical matching(Total Items:0)
(Waiting for update.)
Mapped by homologous gene(Total Items:0)
(Waiting for update.)
Disease ID 925
Disease polydactyly
Case(Waiting for update.)