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eRAM

encyclopedia of Rare Disease Annotation for Precision Medicine



   pancytopenia
  

Disease ID 946
Disease pancytopenia
Definition
Deficiency of all three cell elements of the blood, erythrocytes, leukocytes and platelets.
Synonym
bone marrow failure
low blood cell count
pancytopenia (disorder)
pancytopenia [disease/finding]
pancytopenia nos
pancytopenia nos (disorder)
pancytopenias
Orphanet
DOID
UMLS
C0030312
MeSH
SNOMED-CT
Comorbidity
UMLS | Disease | Sentences' Count(Total Sentences:96)
C0002871  |  anemia  |  21
C0040034  |  thrombocytopenia  |  11
C0015625  |  fanconi anemia  |  9
C0030312  |  pancytopenia  |  8
C0023418  |  leukemia  |  7
C0030312  |  bone marrow failure  |  6
C0002874  |  aplastic anemia  |  5
C0026986  |  myelodysplastic syndrome  |  5
C0027947  |  neutropenia  |  4
C0024790  |  paroxysmal nocturnal hemoglobinuria  |  4
C0002888  |  megaloblastic anemia  |  4
C0006309  |  brucellosis  |  4
C0026986  |  myelodysplastic syndromes  |  3
C0020532  |  hypersplenism  |  3
C0019158  |  hepatitis  |  3
C0001815  |  myelofibrosis  |  2
C0020541  |  portal hypertension  |  2
C0030293  |  pancreatic insufficiency  |  2
C0010346  |  crohn's disease  |  2
C0012739  |  disseminated intravascular coagulation  |  2
C0023448  |  lymphoblastic leukemia  |  2
C0002888  |  megaloblastic anaemia  |  2
C0002871  |  anaemia  |  2
C0024198  |  lyme disease  |  2
C0040053  |  thrombosis  |  2
C0041296  |  tuberculosis  |  2
C0265965  |  dyskeratosis congenita  |  2
C0012739  |  disseminated intravascular coagulation (dic)  |  2
C0023449  |  acute lymphoblastic leukemia  |  2
C0024291  |  hemophagocytic syndrome  |  2
C0019048  |  hemoglobinuria  |  2
C0041466  |  enteric fever  |  2
C0002878  |  hemolytic anemia  |  2
C0020550  |  hyperthyroidism  |  2
C0242342  |  sheehan's syndrome  |  2
C0020635  |  hypopituitarism  |  2
C0085273  |  parvovirus b19 infection  |  1
C0016412  |  folate deficiency  |  1
C0042769  |  virus infection  |  1
C0002892  |  pernicious anemia  |  1
C0006142  |  breast cancer  |  1
C0032461  |  polycythemia  |  1
C0242379  |  lung cancer  |  1
C0023487  |  promyelocytic leukemia  |  1
C0042847  |  vitamin b12 defic  |  1
C0032463  |  polycythemia vera  |  1
C0745140  |  hyperthyroid  |  1
C0023434  |  chronic lymphocytic leukemia  |  1
C0023434  |  small lymphocytic lymphoma  |  1
C0019655  |  histoplasmosis  |  1
C0011991  |  diarrhea  |  1
C0003864  |  arthritis  |  1
C0031154  |  peritonitis  |  1
C0085652  |  pyoderma gangrenosum  |  1
C0002170  |  alopecia  |  1
C0023470  |  myeloid leukemia  |  1
C0042847  |  vitamin b12 deficiency  |  1
C0028945  |  oligodendroglioma  |  1
C0023434  |  lymphocytic lymphoma  |  1
C0023467  |  acute myelogenous leukemia (aml)  |  1
C0001824  |  agranulocytosis  |  1
C0003872  |  psoriatic arthritis  |  1
C0020503  |  secondary hyperparathyroidism  |  1
C0018213  |  grave's disease  |  1
C0021053  |  immune disorder  |  1
C0272170  |  shwachman-diamond syndrome  |  1
C0334590  |  anaplastic oligodendroglioma  |  1
C0010690  |  cystinosis  |  1
C0034212  |  pyoderma  |  1
C0162316  |  iron deficiency anemia  |  1
C0024299  |  lymphoma  |  1
C1368107  |  bone marrow aplasia  |  1
C0024537  |  vivax malaria  |  1
C0023448  |  lymphocytic leukemia  |  1
C0023487  |  acute promyelocytic leukemia  |  1
C0267963  |  exocrine pancreatic insufficiency  |  1
C1955861  |  t-cell large granular lymphocyte leukemia  |  1
C1302547  |  chronic lymphocytic leukemia/small lymphocytic lymphoma  |  1
C0041321  |  miliary tuberculosis  |  1
C0023467  |  acute myeloid leukemia  |  1
C0023788  |  whipple's disease  |  1
C0268583  |  methylmalonic acidemia  |  1
C0020598  |  hypoglycaemia  |  1
C0034069  |  pulmonary fibrosis  |  1
C0002874  |  aplastic anaemia  |  1
C0023290  |  visceral leishmaniasis  |  1
C0027059  |  myocarditis  |  1
C0036202  |  sarcoidosis  |  1
C0023895  |  liver disease  |  1
C0018213  |  graves' disease  |  1
C0023470  |  myelocytic leukemia  |  1
C0023530  |  leukopenia  |  1
C0021400  |  influenza  |  1
C0040100  |  thymoma  |  1
C0023443  |  hairy cell leukemia  |  1
C0376545  |  hematological malignancies  |  1
Curated Gene
Entrez_id | Symbol | Resource(Total Genes:5)
1440  |  CSF3  |  CTD_human
113235  |  SLC46A1  |  CTD_human
2056  |  EPO  |  CTD_human
1719  |  DHFR  |  CTD_human
6157  |  RPL27A  |  CTD_human
Inferring Gene(Waiting for update.)
Text Mined Gene
Entrez_id | Symbol | Score | Resource(Total Genes:109)
25  |  ABL1  |  1.789  |  DISEASES
197  |  AHSG  |  1.386  |  DISEASES
23545  |  ATP6V0A2  |  1.608  |  DISEASES
567  |  B2M  |  1.208  |  DISEASES
50854  |  C6orf48  |  1.709  |  DISEASES
732  |  C8B  |  1.68  |  DISEASES
930  |  CD19  |  3.755  |  DISEASES
914  |  CD2  |  3.69  |  DISEASES
919  |  CD247  |  1.091  |  DISEASES
959  |  CD40LG  |  4.054  |  DISEASES
962  |  CD48  |  1.479  |  DISEASES
921  |  CD5  |  3.938  |  DISEASES
1043  |  CD52  |  1.688  |  DISEASES
966  |  CD59  |  3.731  |  DISEASES
978  |  CDA  |  1.173  |  DISEASES
23122  |  CLASP2  |  2.107  |  DISEASES
1186  |  CLCN7  |  2.555  |  DISEASES
23601  |  CLEC5A  |  1.747  |  DISEASES
85301  |  COL27A1  |  1.534  |  DISEASES
1380  |  CR2  |  1.053  |  DISEASES
1435  |  CSF1  |  2.319  |  DISEASES
65992  |  DDRGK1  |  2.447  |  DISEASES
1736  |  DKC1  |  3.44  |  DISEASES
1758  |  DMP1  |  1.473  |  DISEASES
1791  |  DNTT  |  1.536  |  DISEASES
1806  |  DPYD  |  1.409  |  DISEASES
3692  |  EIF6  |  1.483  |  DISEASES
5169  |  ENPP3  |  2.078  |  DISEASES
51013  |  EXOSC1  |  1.179  |  DISEASES
2152  |  F3  |  1.661  |  DISEASES
2175  |  FANCA  |  4.078  |  DISEASES
2188  |  FANCF  |  2.188  |  DISEASES
2189  |  FANCG  |  2.837  |  DISEASES
356  |  FASLG  |  1.393  |  DISEASES
2214  |  FCGR3A  |  3.035  |  DISEASES
2274  |  FHL2  |  1.638  |  DISEASES
2526  |  FUT4  |  2.739  |  DISEASES
53827  |  FXYD5  |  1.741  |  DISEASES
7855  |  FZD5  |  1.055  |  DISEASES
2623  |  GATA1  |  1.911  |  DISEASES
2624  |  GATA2  |  2.157  |  DISEASES
10755  |  GIPC1  |  1.016  |  DISEASES
165829  |  GPR156  |  3.125  |  DISEASES
2993  |  GYPA  |  1.637  |  DISEASES
3205  |  HOXA9  |  1.498  |  DISEASES
3214  |  HOXB4  |  1.967  |  DISEASES
3239  |  HOXD13  |  1.478  |  DISEASES
3240  |  HP  |  2.797  |  DISEASES
3446  |  IFNA10  |  1.784  |  DISEASES
3563  |  IL3RA  |  2.327  |  DISEASES
3684  |  ITGAM  |  2.049  |  DISEASES
3713  |  IVL  |  2.369  |  DISEASES
3717  |  JAK2  |  2.043  |  DISEASES
3767  |  KCNJ11  |  2.395  |  DISEASES
3895  |  KTN1  |  1.579  |  DISEASES
27040  |  LAT  |  1.108  |  DISEASES
3939  |  LDHA  |  1.265  |  DISEASES
3981  |  LIG4  |  2.648  |  DISEASES
55788  |  LMBRD1  |  1.141  |  DISEASES
1130  |  LYST  |  2.342  |  DISEASES
196410  |  METTL7B  |  2.264  |  DISEASES
83881  |  MIXL1  |  1.48  |  DISEASES
4311  |  MME  |  2.503  |  DISEASES
64386  |  MMP25  |  1.155  |  DISEASES
4336  |  MOBP  |  1.522  |  DISEASES
51660  |  MPC1  |  1.171  |  DISEASES
4352  |  MPL  |  4.466  |  DISEASES
4524  |  MTHFR  |  2.223  |  DISEASES
4548  |  MTR  |  1.578  |  DISEASES
4644  |  MYO5A  |  1.422  |  DISEASES
4798  |  NFRKB  |  2.057  |  DISEASES
79840  |  NHEJ1  |  2.397  |  DISEASES
55505  |  NOP10  |  1.427  |  DISEASES
23612  |  PHLDA3  |  2.026  |  DISEASES
5277  |  PIGA  |  3.431  |  DISEASES
9842  |  PLEKHM1  |  3.345  |  DISEASES
5362  |  PLXNA2  |  1.195  |  DISEASES
84106  |  PRAM1  |  2.2  |  DISEASES
5625  |  PRODH  |  1.972  |  DISEASES
5788  |  PTPRC  |  2.773  |  DISEASES
5873  |  RAB27A  |  2.743  |  DISEASES
56963  |  RGMA  |  2.454  |  DISEASES
83695  |  RHNO1  |  1.47  |  DISEASES
6157  |  RPL27A  |  2.067  |  DISEASES
6280  |  S100A9  |  2.056  |  DISEASES
6288  |  SAA1  |  2.402  |  DISEASES
219285  |  SAMD9L  |  2.11  |  DISEASES
256987  |  SERINC5  |  1.974  |  DISEASES
5265  |  SERPINA1  |  1.132  |  DISEASES
12  |  SERPINA3  |  1.347  |  DISEASES
4068  |  SH2D1A  |  2.773  |  DISEASES
83650  |  SLC35G5  |  1.829  |  DISEASES
113235  |  SLC46A1  |  1.964  |  DISEASES
23583  |  SMUG1  |  2.21  |  DISEASES
6693  |  SPN  |  1.8  |  DISEASES
100642175  |  SPRY4-IT1  |  1.396  |  DISEASES
8676  |  STX11  |  3.693  |  DISEASES
6888  |  TALDO1  |  2.289  |  DISEASES
7012  |  TERC  |  1.302  |  DISEASES
54790  |  TET2  |  5.582  |  DISEASES
7072  |  TIA1  |  2.95  |  DISEASES
7124  |  TNF  |  2.861  |  DISEASES
7127  |  TNFAIP2  |  1.19  |  DISEASES
7133  |  TNFRSF1B  |  2.438  |  DISEASES
127262  |  TPRG1L  |  1.132  |  DISEASES
79876  |  UBA5  |  1.945  |  DISEASES
51506  |  UFC1  |  1.763  |  DISEASES
11311  |  VPS45  |  2.197  |  DISEASES
7490  |  WT1  |  1.014  |  DISEASES
Locus(Waiting for update.)
Disease ID 946
Disease pancytopenia
Integrated Phenotype(Waiting for update.)
Text Mined Phenotype
HPO | Name | Sentences' Count(Total Phenotypes:91)
HP:0001903  |  Anemia  |  25
HP:0001873  |  Low platelet count  |  11
HP:0001876  |  Low blood cell count  |  8
HP:0001945  |  Fever  |  7
HP:0001744  |  Splenomegaly  |  7
HP:0001909  |  Leukemia  |  6
HP:0001875  |  Neutropenia  |  6
HP:0005528  |  Bone marrow hypoplasia  |  6
HP:0001915  |  Aplastic anemia  |  5
HP:0002863  |  Myelodysplastic syndrome  |  5
HP:0001889  |  Megaloblastic anemia  |  4
HP:0000836  |  Overactive thyroid  |  4
HP:0100806  |  Sepsis  |  4
HP:0004818  |  Paroxysmal nocturnal hemoglobinuria  |  4
HP:0001971  |  Hypersplenism  |  4
HP:0001433  |  Enlarged liver and spleen  |  4
HP:0012115  |  Liver inflammation  |  3
HP:0012156  |  Hemophagocytosis  |  3
HP:0003641  |  Hemoglobin in urine  |  2
HP:0002910  |  Elevated transaminases  |  2
HP:0011974  |  Myelofibrosis  |  2
HP:0001409  |  Portal hypertension  |  2
HP:0002155  |  Increased triglycerides  |  2
HP:0005521  |  Disseminated intravascular coagulation  |  2
HP:0002835  |  Aspiration  |  2
HP:0100033  |  Tic disorder  |  2
HP:0001878  |  Haemolytic anaemia  |  2
HP:0040075  |  Hypopituitarism  |  2
HP:0001596  |  Hair loss  |  2
HP:0100280  |  Morbus Crohn  |  2
HP:0003256  |  Coagulopathy  |  2
HP:0003139  |  Panhypogammaglobulinemia  |  1
HP:0002665  |  Lymphoma  |  1
HP:0012234  |  Agranulocytosis  |  1
HP:0004836  |  Acute promyelocytic leukemia  |  1
HP:0001695  |  Cardiac arrest  |  1
HP:0003201  |  Rhabdomyolysis  |  1
HP:0001000  |  Pigmentary changes  |  1
HP:0001941  |  acidemia  |  1
HP:0011900  |  Hypofibrinogenemia  |  1
HP:0002586  |  Peritonitis  |  1
HP:0200119  |  Acute liver inflammation  |  1
HP:0004936  |  Blood clot in vein  |  1
HP:0002045  |  Abnormally low body temperature  |  1
HP:0002239  |  Gastrointestinal hemorrhage  |  1
HP:0003281  |  Increased ferritin  |  1
HP:0002721  |  Immunodeficiency  |  1
HP:0001541  |  Ascites  |  1
HP:0001882  |  Decreased blood leukocyte number  |  1
HP:0007281  |  Developmental stagnation  |  1
HP:0001901  |  Abnormally shaped erythrocytes  |  1
HP:0001895  |  Normochromic anemia  |  1
HP:0002014  |  Diarrhea  |  1
HP:0030731  |  Carcinoma  |  1
HP:0008404  |  Dystrophic nails  |  1
HP:0001942  |  Metabolic acidosis  |  1
HP:0001738  |  Exocrine pancreatic insufficiency  |  1
HP:0012378  |  Fatigue  |  1
HP:0002170  |  Intracranial hemorrhage  |  1
HP:0011967  |  Hypocupremia  |  1
HP:0002960  |  Autoimmune condition  |  1
HP:0004787  |  Fulminant hepatitis  |  1
HP:0002206  |  Pulmonary fibrosis  |  1
HP:0005037  |  Proximal radio-ulnar synostosis  |  1
HP:0002664  |  Neoplasia  |  1
HP:0003006  |  Neuroblastoma  |  1
HP:0100522  |  Thymoma  |  1
HP:0006721  |  Acute lymphocytic leukemia  |  1
HP:0012324  |  Myeloid leukemia  |  1
HP:0001943  |  Hypoglycemia  |  1
HP:0000282  |  Facial puffiness  |  1
HP:0001369  |  Arthritis  |  1
HP:0003493  |  Elevated antinuclear antibody  |  1
HP:0100507  |  Folate deficiency  |  1
HP:0012819  |  Myocarditis  |  1
HP:0012312  |  Low blood monocyte number  |  1
HP:0002584  |  Intestinal hemorrhage  |  1
HP:0005550  |  Chronic lymphatic leukemia  |  1
HP:0002789  |  Increased respiratory rate or depth of breathing  |  1
HP:0000952  |  Yellow skin  |  1
HP:0001891  |  Iron-deficiency anemia  |  1
HP:0004808  |  Acute myelogenous leukemia  |  1
HP:0001978  |  Extramedullary hematopoiesis  |  1
HP:0100502  |  Vitamin B12 deficiency  |  1
HP:0003002  |  Breast carcinoma  |  1
HP:0000924  |  Abnormality of the skeletal system  |  1
HP:0002912  |  Methylmalonic acidemia  |  1
HP:0000867  |  Secondary hyperparathyroidism  |  1
HP:0000078  |  Genital abnormalities  |  1
HP:0000999  |  Pyoderma  |  1
HP:0001342  |  Intracerebral hemorrhage  |  1
Disease ID 946
Disease pancytopenia
Manually Symptom
UMLS  | Name(Total Manually Symptoms:33)
C2707258  |  infections
C2364133  |  infection
C1963279  |  viral hepatitis
C1963099  |  myelodysplasia
C1827561  |  disseminated mycobacterium kansasii infection
C1692886  |  septic arthritis
C1510471  |  vitamin deficiency
C1420725  |  thymoma
C1090821  |  sepsis
C1027109  |  scleroderma
C0948600  |  organ failure
C0743841  |  febrile illness
C0343387  |  neutropenic enterocolitis
C0278847  |  non-invasive thymoma
C0267373  |  intestinal bleeding
C0242342  |  sheehan's syndrome
C0240318  |  mediastinal mass
C0043325  |  xanthomatosis
C0041321  |  miliary tuberculosis
C0040188  |  tic disorder
C0036690  |  septicemia
C0032285  |  pneumonia
C0026946  |  fungal infection
C0024314  |  lymphoproliferative disorder
C0023462  |  malignant megakaryocytosis
C0023380  |  lethargy
C0021345  |  infectious mononucleosis
C0021051  |  immunodeficiency
C0020981  |  immunoblastic lymphadenopathy
C0020550  |  hyperthyroidism
C0019214  |  hepatosplenomegaly
C0018213  |  graves-basedow disease
C0015970  |  fever of unknown origin
Text Mined Symptom
UMLS | Name | Sentences' Count(Total Symptoms:17)
C0030312  |  pancytopenia  |  8
C0009450  |  infection  |  8
C0015625  |  fanconi anemia  |  7
C0002871  |  anemia  |  7
C0040034  |  thrombocytopenia  |  6
C0020550  |  hyperthyroidism  |  4
C0019214  |  hepatosplenomegaly  |  4
C0036690  |  sepsis  |  4
C0796095  |  c syndrome  |  3
C0242342  |  sheehan's syndrome  |  2
C0040188  |  tic disorder  |  2
C0026946  |  fungal infection  |  1
C1839611  |  n syndrome  |  1
C0948600  |  organ failure  |  1
C0040100  |  thymoma  |  1
C0027947  |  neutropenia  |  1
C0041321  |  miliary tuberculosis  |  1
Manually Genotype(Total Text Mining Genotypes:0)
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Text Mining Genotype(Total Genotypes:0)
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All Snps(Total Genotypes:3)
snpId pubmedId geneId geneSymbol diseaseId sourceId sentence score Year geneSymbol_dbSNP CHROMOSOME POS REF ALT
rs2893607212437656147495APCDD1umls:C0030312BeFreeWe report a novel missense mutation in DKC1 exon 3 (T113-->C, Ile38Thr) in a Sardinian infant with XL-HHS in whom the disease was characterized by 'T+B-NK-' severe combined immunodeficiency and bone marrow failure.0.0002714422002DKC1X154765472TA,C,G
rs28936072124376562591GALNT3umls:C0030312BeFreeWe report a novel missense mutation in DKC1 exon 3 (T113-->C, Ile38Thr) in a Sardinian infant with XL-HHS in whom the disease was characterized by 'T+B-NK-' severe combined immunodeficiency and bone marrow failure.0.0002714422002DKC1X154765472TA,C,G
rs28936072124376561736DKC1umls:C0030312BeFreeWe report a novel missense mutation in DKC1 exon 3 (T113-->C, Ile38Thr) in a Sardinian infant with XL-HHS in whom the disease was characterized by 'T+B-NK-' severe combined immunodeficiency and bone marrow failure.0.0010857672002DKC1X154765472TA,C,G
GWASdb Annotation(Total Genotypes:0)
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GWASdb Snp Trait(Total Genotypes:0)
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Mapped by lexical matching(Total Items:0)
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Mapped by homologous gene(Total Items:0)
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Disease ID 946
Disease pancytopenia
Case(Waiting for update.)