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eRAM

encyclopedia of Rare Disease Annotation for Precision Medicine



   osteomalacia
  

Disease ID 1268
Disease osteomalacia
Definition
inadequate or delayed mineralization of osteoid in mature cortical and spongy bone.
Synonym
om - osteomalacia
osteomalacia (disorder)
osteomalacia [disease/finding]
osteomalacia nos
osteomalacia unspecified
osteomalacia unspecified (disorder)
osteomalacia, unspecified
DOID
UMLS
C0029442
MeSH
SNOMED-CT
Comorbidity
UMLS | Disease | Sentences' Count(Total Sentences:29)
C0042870  |  vitamin d defic  |  13
C0042870  |  vitamin d deficiency  |  13
C0029456  |  osteoporosis  |  5
C1334699  |  mesenchymal neoplasm  |  5
C0020502  |  hyperparathyroidism  |  3
C1334699  |  mesenchymal tumor  |  3
C0001126  |  renal tubular acidosis  |  2
C0015624  |  fanconi's syndrome  |  1
C0010346  |  crohn's disease  |  1
C0242292  |  mccune-albright syndrome  |  1
C0016063  |  osteitis fibrosa  |  1
C0001973  |  alcoholism  |  1
C0024523  |  malabsorption  |  1
C0031117  |  peripheral neuropathy  |  1
C0035078  |  renal failure  |  1
C0015624  |  fanconi syndrome  |  1
C0085113  |  neurofibromatosis  |  1
C0005940  |  bone disease  |  1
C0033860  |  psoriasis  |  1
C0020630  |  hypophosphatasia  |  1
C0022661  |  chronic renal failure  |  1
C0029401  |  paget's bone disease  |  1
C0242292  |  albright syndrome  |  1
C0035579  |  rickets  |  1
C0040156  |  thyrotoxicosis  |  1
C0007570  |  celiac disease  |  1
C0149521  |  chronic pancreatitis  |  1
C0442874  |  neuropathy  |  1
C0020503  |  secondary hyperparathyroidism  |  1
Curated Gene(Waiting for update.)
Inferring Gene
Entrez_id | Symbol | Resource(Total Genes:1)
7421  |  VDR  |  CIPHER
Text Mined Gene
Entrez_id | Symbol | Score | Resource(Total Genes:66)
1244  |  ABCC2  |  1.481  |  DISEASES
55811  |  ADCY10  |  3.119  |  DISEASES
249  |  ALPL  |  5.21  |  DISEASES
9179  |  AP4M1  |  1.619  |  DISEASES
567  |  B2M  |  2.295  |  DISEASES
631  |  BFSP1  |  1.512  |  DISEASES
632  |  BGLAP  |  4.9  |  DISEASES
633  |  BGN  |  1.068  |  DISEASES
650  |  BMP2  |  1.396  |  DISEASES
796  |  CALCA  |  4.167  |  DISEASES
8573  |  CASK  |  1.09  |  DISEASES
846  |  CASR  |  2.068  |  DISEASES
22802  |  CLCA4  |  1.026  |  DISEASES
1184  |  CLCN5  |  2.794  |  DISEASES
8029  |  CUBN  |  1.474  |  DISEASES
120227  |  CYP2R1  |  1.769  |  DISEASES
1576  |  CYP3A4  |  1.581  |  DISEASES
1758  |  DMP1  |  3.533  |  DISEASES
5167  |  ENPP1  |  3.194  |  DISEASES
54757  |  FAM20A  |  1.518  |  DISEASES
56975  |  FAM20C  |  3.415  |  DISEASES
2232  |  FDXR  |  2.167  |  DISEASES
2258  |  FGF13  |  1.996  |  DISEASES
2260  |  FGFR1  |  2.658  |  DISEASES
2335  |  FN1  |  2.065  |  DISEASES
2591  |  GALNT3  |  4.508  |  DISEASES
2638  |  GC  |  3.136  |  DISEASES
9247  |  GCM2  |  2.084  |  DISEASES
2778  |  GNAS  |  2.008  |  DISEASES
3043  |  HBB  |  1.327  |  DISEASES
3109  |  HLA-DMB  |  1.627  |  DISEASES
3250  |  HPR  |  1.138  |  DISEASES
3339  |  HSPG2  |  1.313  |  DISEASES
81888  |  HYI  |  2.271  |  DISEASES
10656  |  KHDRBS3  |  3.607  |  DISEASES
9365  |  KL  |  4.558  |  DISEASES
9735  |  KNTC1  |  4.925  |  DISEASES
80740  |  LY6G6C  |  2.45  |  DISEASES
56955  |  MEPE  |  5.601  |  DISEASES
8972  |  MGAM  |  2.746  |  DISEASES
8856  |  NR1I2  |  2.369  |  DISEASES
4952  |  OCRL  |  1.497  |  DISEASES
126014  |  OSCAR  |  1.713  |  DISEASES
5251  |  PHEX  |  5.96  |  DISEASES
162466  |  PHOSPHO1  |  3.467  |  DISEASES
5744  |  PTHLH  |  2.531  |  DISEASES
860  |  RUNX2  |  1.55  |  DISEASES
795  |  S100G  |  2.571  |  DISEASES
51150  |  SDF4  |  1.884  |  DISEASES
6424  |  SFRP4  |  4.152  |  DISEASES
6575  |  SLC20A2  |  1.834  |  DISEASES
9356  |  SLC22A6  |  1.963  |  DISEASES
6569  |  SLC34A1  |  4.039  |  DISEASES
10568  |  SLC34A2  |  1.034  |  DISEASES
142680  |  SLC34A3  |  5.324  |  DISEASES
133308  |  SLC9B2  |  2.169  |  DISEASES
23583  |  SMUG1  |  2.079  |  DISEASES
6660  |  SOX5  |  1.047  |  DISEASES
6696  |  SPP1  |  2.742  |  DISEASES
6708  |  SPTA1  |  4.752  |  DISEASES
55503  |  TRPV6  |  2.811  |  DISEASES
27229  |  TUBGCP4  |  1.364  |  DISEASES
7421  |  VDR  |  4.579  |  DISEASES
7436  |  VLDLR  |  1.365  |  DISEASES
9213  |  XPR1  |  1.147  |  DISEASES
83744  |  ZNF484  |  2.928  |  DISEASES
Locus(Waiting for update.)
Disease ID 1268
Disease osteomalacia
Integrated Phenotype(Waiting for update.)
Text Mined Phenotype
HPO | Name | Sentences' Count(Total Phenotypes:37)
HP:0002664  |  Neoplasia  |  25
HP:0100512  |  Vitamin D deficiency  |  14
HP:0002148  |  Hypophosphataemia  |  11
HP:0012531  |  Pain  |  7
HP:0000939  |  Osteoporosis  |  7
HP:0002653  |  Bone pain  |  6
HP:0001324  |  Muscular weakness  |  4
HP:0001510  |  Growth deficiency  |  3
HP:0001947  |  Renal tubular acidosis  |  2
HP:0000843  |  Hyperparathyroidism  |  2
HP:0002757  |  Multiple fractures  |  2
HP:0006280  |  Chronic pancreas inflammation  |  1
HP:0100036  |  Pseudo-fractures  |  1
HP:0002515  |  Waddling gait  |  1
HP:0003774  |  End-stage renal failure  |  1
HP:0002901  |  Hypocalcemia  |  1
HP:0000083  |  Renal insufficiency  |  1
HP:0002527  |  Falls  |  1
HP:0003198  |  Myopathic changes  |  1
HP:0002748  |  Rickets  |  1
HP:0003765  |  Psoriasis  |  1
HP:0100280  |  Morbus Crohn  |  1
HP:0000117  |  Decreased tubular maximum for phosphate reabsorption per glomerular filtration rate  |  1
HP:0002608  |  Celiac disease  |  1
HP:0003323  |  Muscle weakness, progressive  |  1
HP:0001067  |  Neurofibromas  |  1
HP:0003109  |  Hyperphosphaturia  |  1
HP:0001941  |  acidemia  |  1
HP:0000853  |  Goitre  |  1
HP:0001942  |  Metabolic acidosis  |  1
HP:0009830  |  Peripheral neuritis  |  1
HP:0012378  |  Fatigue  |  1
HP:0002024  |  Intestinal malabsorption  |  1
HP:0002659  |  Increased tendency to fractures  |  1
HP:0002315  |  Headaches  |  1
HP:0012125  |  Prostate cancer  |  1
HP:0003155  |  Hyperphosphatasia  |  1
Disease ID 1268
Disease osteomalacia
Manually Symptom
UMLS  | Name(Total Manually Symptoms:20)
C2364118  |  weakness
C1868653  |  calcific pancreatitis
C1336052  |  spindle cell tumor
C0600033  |  kyphoscoliosis
C0442874  |  neuropathy
C0345904  |  liver cancer
C0341706  |  glycinuria
C0271844  |  parathyroid hyperplasia
C0268435  |  proximal renal tubular acidosis
C0235394  |  wasting
C0221002  |  primary hyperparathyroidism
C0029417  |  osteoblastoma
C0027831  |  neurofibromatosis 1
C0027809  |  neurinoma
C0026846  |  muscle atrophy
C0020503  |  secondary hyperparathyroidism
C0020502  |  hyperparathyroidism
C0013418  |  dystocia
C0005940  |  bone disease
C0002514  |  hyperaminoaciduria
Text Mined Symptom
UMLS | Name | Sentences' Count(Total Symptoms:5)
C0004093  |  weakness  |  5
C0020502  |  hyperparathyroidism  |  2
C0005940  |  bone disease  |  1
C0442874  |  neuropathy  |  1
C0235394  |  wasting  |  1
Manually Genotype(Total Text Mining Genotypes:0)
(Waiting for update.)
Text Mining Genotype(Total Genotypes:0)
(Waiting for update.)
All Snps(Total Genotypes:0)
(Waiting for update.)
GWASdb Annotation(Total Genotypes:0)
(Waiting for update.)
GWASdb Snp Trait(Total Genotypes:0)
(Waiting for update.)
Mapped by lexical matching(Total Items:0)
(Waiting for update.)
Mapped by homologous gene(Total Items:0)
(Waiting for update.)
Disease ID 1268
Disease osteomalacia
Case(Waiting for update.)