macular degeneration |
Disease ID | 319 |
---|---|
Disease | macular degeneration |
Manually Symptom | UMLS | Name(Total Manually Symptoms:11) |
Text Mined Symptom | UMLS | Name | Sentences' Count(Total Symptoms:9) C0456909 | vision loss | 30 C0456909 | blindness | 28 C0019080 | hemorrhage | 19 C0086543 | cataract | 6 C0339546 | retinal pigment epithelial detachment | 4 C0036454 | scotoma | 2 C0015397 | eye disease | 1 C0233763 | visual hallucinations | 1 C0035312 | retinal drusen | 1 |
Manually Genotype(Total Text Mining Genotypes:0) |
---|
(Waiting for update.) |
Text Mining Genotype(Total Genotypes:0) | |
---|---|
(Waiting for update.) |
All Snps(Total Genotypes:92) | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
snpId | pubmedId | geneId | geneSymbol | diseaseId | sourceId | sentence | score | Year | geneSymbol_dbSNP | CHROMOSOME | POS | REF | ALT |
rs10490923 | 23534868 | 387715 | ARMS2 | umls:C0024437 | BeFree | CFH (rs1410996), HTRA1 (rs112000638) and ARMS2 (rs10490923) gene polymorphisms are associated with AMD risk in Spanish patients. | 0.007057489 | 2014 | ARMS2;LOC105378525 | 10 | 122454735 | G | A |
rs10490923 | 23534868 | 5654 | HTRA1 | umls:C0024437 | BeFree | CFH (rs1410996), HTRA1 (rs112000638) and ARMS2 (rs10490923) gene polymorphisms are associated with AMD risk in Spanish patients. | 0.005428837 | 2014 | ARMS2;LOC105378525 | 10 | 122454735 | G | A |
rs10490923 | 23534868 | 3075 | CFH | umls:C0024437 | BeFree | CFH (rs1410996), HTRA1 (rs112000638) and ARMS2 (rs10490923) gene polymorphisms are associated with AMD risk in Spanish patients. | 0.011129117 | 2014 | ARMS2;LOC105378525 | 10 | 122454735 | G | A |
rs10490924 | 22491416 | 387715 | ARMS2 | umls:C0024437 | BeFree | After adjusting for rs11200638, ARMS2 rs10490924 remained significantly associated with exudative AMD (P = 0.011), but not with PCV (P = 0.077). | 0.007057489 | 2012 | ARMS2;LOC105378525 | 10 | 122454932 | G | T |
rs10490924 | 18164066 | 5654 | HTRA1 | umls:C0024437 | BeFree | The coding HTRA1 SNP rs2293870, not part of the significant haplotypes containing rs10490924 and rs11200638, showed as strong an association with increased susceptibility to neovascular AMD. | 0.005428837 | 2008 | ARMS2;LOC105378525 | 10 | 122454932 | G | T |
rs10490924 | 18054635 | 387715 | ARMS2 | umls:C0024437 | BeFree | The AMD-associated CFH Y402H and LOC387715 A69S variants were associated with differences in choroidal neovascular lesion size in this study. | 0.007057489 | 2007 | ARMS2;LOC105378525 | 10 | 122454932 | G | T |
rs10490924 | 18164066 | 387715 | ARMS2 | umls:C0024437 | BeFree | Many single-nucleotide polymorphisms (SNPs), including the previously reported variants rs10490924 (hypothetical LOC387715/ARMS2) and rs11200638 (HTRA1), defined 2 significant haplotypes associated with increased risk of neovascular AMD. | 0.007057489 | 2008 | ARMS2;LOC105378525 | 10 | 122454932 | G | T |
rs10490924 | 22809783 | 387715 | ARMS2 | umls:C0024437 | BeFree | ARMS2 A69S genotype is associated with second-eye involvement of exudative AMD and with the period between first- and second-eye involvements. | 0.007057489 | 2012 | ARMS2;LOC105378525 | 10 | 122454932 | G | T |
rs10490924 | 24865191 | 387715 | ARMS2 | umls:C0024437 | BeFree | After adjusting for age, gender, ARMS2 A69S, and CFHI62V, the A allele of rs429608 was significantly protective against neovascular AMD (odds ratio [OR] 0.24, 95% confidence interval [CI] 0.122-0.484, p < 0.001), PCV (OR 0.43, 95% CI 0.262-0.704, p = 0.001), RAP (OR 0.09, 95% CI 0.014-0.581, p = 0.011). | 0.007057489 | 2015 | ARMS2;LOC105378525 | 10 | 122454932 | G | T |
rs10490924 | 18292785 | 3075 | CFH | umls:C0024437 | BeFree | Sixty-nine patients being treated for neovascular AMD with PDT were genotyped for the CFH Y402H and LOC387715 A69S polymorphisms by allele-specific digestion of PCR products. | 0.011129117 | 2009 | ARMS2;LOC105378525 | 10 | 122454932 | G | T |
rs10490924 | 18292785 | 387715 | ARMS2 | umls:C0024437 | BeFree | Sixty-nine patients being treated for neovascular AMD with PDT were genotyped for the CFH Y402H and LOC387715 A69S polymorphisms by allele-specific digestion of PCR products. | 0.007057489 | 2009 | ARMS2;LOC105378525 | 10 | 122454932 | G | T |
rs10490924 | 24362810 | 387715 | ARMS2 | umls:C0024437 | BeFree | After multivariate adjustment, CFH Y402H and ARMS2 A69S polymorphisms were associated with very high risk for exudative AMD (OR = 6.21 and OR = 11.7, respectively, p < 0.0001). | 0.007057489 | 2013 | ARMS2;LOC105378525 | 10 | 122454932 | G | T |
rs10490924 | 22219653 | 387715 | ARMS2 | umls:C0024437 | BeFree | Our meta-analysis provides substantial evidence that the ARMS2 A69S variant confers a significantly higher risk of neovascular AMD than PCV. | 0.007057489 | 2011 | ARMS2;LOC105378525 | 10 | 122454932 | G | T |
rs10490924 | 24362810 | 3075 | CFH | umls:C0024437 | BeFree | After multivariate adjustment, CFH Y402H and ARMS2 A69S polymorphisms were associated with very high risk for exudative AMD (OR = 6.21 and OR = 11.7, respectively, p < 0.0001). | 0.011129117 | 2013 | ARMS2;LOC105378525 | 10 | 122454932 | G | T |
rs10490924 | 25185256 | 387715 | ARMS2 | umls:C0024437 | BeFree | Association between variants A69S in ARMS2 gene and response to treatment of exudative AMD: a meta-analysis. | 0.007057489 | 2014 | ARMS2;LOC105378525 | 10 | 122454932 | G | T |
rs1061170 | 20456446 | 3075 | CFH | umls:C0024437 | BeFree | The joint effects for complement factor H (CFH) Y402H and 10q26 variants indicated an increased risk of exudative AMD. | 0.011129117 | 2010 | CFH | 1 | 196690107 | C | T |
rs1061170 | 16300415 | 3075 | CFH | umls:C0024437 | BeFree | CFH Y402H confers similar risk of soft drusen and both forms of advanced AMD. | 0.011129117 | 2006 | CFH | 1 | 196690107 | C | T |
rs1061170 | 18292785 | 3075 | CFH | umls:C0024437 | BeFree | Sixty-nine patients being treated for neovascular AMD with PDT were genotyped for the CFH Y402H and LOC387715 A69S polymorphisms by allele-specific digestion of PCR products. | 0.011129117 | 2009 | CFH | 1 | 196690107 | C | T |
rs1061170 | 19899988 | 629 | CFB | umls:C0024437 | BeFree | Furthermore, the C allele of the CFH rs1061170, but not the CFB rs4151667 and rs641153, was significnatly associated with increased risk for AMD (OR 3.09, 95% CI 1.55-6.15, p < 0.001). | 0.000814326 | 2009 | CFH | 1 | 196690107 | C | T |
rs1061170 | 19692124 | 1401 | CRP | umls:C0024437 | BeFree | Our data did not show significant association between the CFH Y402H polymorphism and PDT treatment response for neovascular AMD; however, CRP genetic variants were associated with a positive response to PDT treatment for neovascular AMD. | 0.001085767 | 2009 | CFH | 1 | 196690107 | C | T |
rs1061170 | 16865697 | 3075 | CFH | umls:C0024437 | BeFree | Ethnic variation in AMD-associated complement factor H polymorphism p.Tyr402His. | 0.011129117 | 2006 | CFH | 1 | 196690107 | C | T |
rs1061170 | 21158586 | 7422 | VEGFA | umls:C0024437 | BeFree | To determine serum vascular endothelial growth factor 165 (VEGF165) levels and the association of the complement factor H gene (CFH) Y402H polymorphism in patients with exudative age-related macular degeneration (AMD) in comparison to unaffected control subjects. | 0.004614512 | 2011 | CFH | 1 | 196690107 | C | T |
rs1061170 | 24080590 | 7422 | VEGFA | umls:C0024437 | BeFree | Genotypes of 3 polymorphisms in known AMD susceptibility loci (rs1061170 in complement factor H (CFH), rs11200638 in HTRA1 and rs1413711 in VEGF) were determined. | 0.004614512 | 2013 | CFH | 1 | 196690107 | C | T |
rs1061170 | 21158586 | 3075 | CFH | umls:C0024437 | BeFree | To determine serum vascular endothelial growth factor 165 (VEGF165) levels and the association of the complement factor H gene (CFH) Y402H polymorphism in patients with exudative age-related macular degeneration (AMD) in comparison to unaffected control subjects. | 0.011129117 | 2011 | CFH | 1 | 196690107 | C | T |
rs1061170 | 24362810 | 387715 | ARMS2 | umls:C0024437 | BeFree | After multivariate adjustment, CFH Y402H and ARMS2 A69S polymorphisms were associated with very high risk for exudative AMD (OR = 6.21 and OR = 11.7, respectively, p < 0.0001). | 0.007057489 | 2013 | CFH | 1 | 196690107 | C | T |
rs1061170 | 18223247 | 3075 | CFH | umls:C0024437 | BeFree | Y402H polymorphism which has been suggested to be a major risk factor of AMD in Caucasians was found to be only marginally associated with exudative AMD with low frequency, whereas three adjacent SNPs in the CFH gene were significantly associated with AMD in Koreans. | 0.011129117 | 2008 | CFH | 1 | 196690107 | C | T |
rs1061170 | 24113783 | 3075 | CFH | umls:C0024437 | BeFree | There was a trend for association between the CFH Y402H T allele (low risk for AMD, n = 6) and improvement. | 0.011129117 | 2014 | CFH | 1 | 196690107 | C | T |
rs1061170 | 23103884 | 387715 | ARMS2 | umls:C0024437 | BeFree | AMD patients with risk variants at rs1061170 (CFH:p.Y402H) and ARMS2 and smokers (≥20 packs/year) were significantly earlier affected by AMD than those carrying the non-risk variants at each locus. | 0.007057489 | 2013 | CFH | 1 | 196690107 | C | T |
rs1061170 | 24080590 | 3075 | CFH | umls:C0024437 | BeFree | Genotypes of 3 polymorphisms in known AMD susceptibility loci (rs1061170 in complement factor H (CFH), rs11200638 in HTRA1 and rs1413711 in VEGF) were determined. | 0.011129117 | 2013 | CFH | 1 | 196690107 | C | T |
rs1061170 | 17398321 | 3075 | CFH | umls:C0024437 | BeFree | Our data suggest that the CFH Y402H polymorphism is a major risk factor for exudative AMD in a Central European population. | 0.011129117 | 2007 | CFH | 1 | 196690107 | C | T |
rs1061170 | 19692124 | 3075 | CFH | umls:C0024437 | BeFree | Our data did not show significant association between the CFH Y402H polymorphism and PDT treatment response for neovascular AMD; however, CRP genetic variants were associated with a positive response to PDT treatment for neovascular AMD. | 0.011129117 | 2009 | CFH | 1 | 196690107 | C | T |
rs1061170 | 18292785 | 387715 | ARMS2 | umls:C0024437 | BeFree | Sixty-nine patients being treated for neovascular AMD with PDT were genotyped for the CFH Y402H and LOC387715 A69S polymorphisms by allele-specific digestion of PCR products. | 0.007057489 | 2009 | CFH | 1 | 196690107 | C | T |
rs1061170 | 24362810 | 3075 | CFH | umls:C0024437 | BeFree | After multivariate adjustment, CFH Y402H and ARMS2 A69S polymorphisms were associated with very high risk for exudative AMD (OR = 6.21 and OR = 11.7, respectively, p < 0.0001). | 0.011129117 | 2013 | CFH | 1 | 196690107 | C | T |
rs1061170 | 19899988 | 3075 | CFH | umls:C0024437 | BeFree | Furthermore, the C allele of the CFH rs1061170, but not the CFB rs4151667 and rs641153, was significnatly associated with increased risk for AMD (OR 3.09, 95% CI 1.55-6.15, p < 0.001). | 0.011129117 | 2009 | CFH | 1 | 196690107 | C | T |
rs1061170 | 23204795 | 3075 | CFH | umls:C0024437 | BeFree | The purpose of this study was to determine the pharmacogenetic effects of complement factor H (CFH) Y402H, LOC387715 and high-temperature requirement factor A1 (HTRA1) genotypes on the treatment of exudative age-related macular degeneration (AMD) by intravitreal bevacizumab injection in a Korean population. | 0.011129117 | 2012 | CFH | 1 | 196690107 | C | T |
rs111033578 | 16123441 | 114902 | C1QTNF5 | umls:C0024437 | BeFree | All individuals with either LAZ and/or macular degeneration carry the same CTRP5 S163R mutation, which is transmitted in autosomal dominant manner. | 0.001085767 | 2005 | MFRP;C1QTNF5 | 11 | 119339574 | G | C |
rs112000638 | 23534868 | 5654 | HTRA1 | umls:C0024437 | BeFree | CFH (rs1410996), HTRA1 (rs112000638) and ARMS2 (rs10490923) gene polymorphisms are associated with AMD risk in Spanish patients. | 0.005428837 | 2014 | NA | 11 | 131359434 | T | C |
rs112000638 | 23534868 | 387715 | ARMS2 | umls:C0024437 | BeFree | CFH (rs1410996), HTRA1 (rs112000638) and ARMS2 (rs10490923) gene polymorphisms are associated with AMD risk in Spanish patients. | 0.007057489 | 2014 | NA | 11 | 131359434 | T | C |
rs112000638 | 23534868 | 3075 | CFH | umls:C0024437 | BeFree | CFH (rs1410996), HTRA1 (rs112000638) and ARMS2 (rs10490923) gene polymorphisms are associated with AMD risk in Spanish patients. | 0.011129117 | 2014 | NA | 11 | 131359434 | T | C |
rs11200638 | 24393350 | 5654 | HTRA1 | umls:C0024437 | BeFree | Eight single nucleotide polymorphisms (SNPs) from 6 genes of the HDL metabolism pathway and 2 known AMD-associated SNPs, rs800292 (from complement factor H [CFH]) and rs11200638 (from HtrA serine peptidase 1 [HTRA1]), were genotyped in all study subjects using the TaqMan genotyping technology (Applied Biosystems, Foster City, CA). | 0.005428837 | 2013 | HTRA1;LOC105378525 | 10 | 122461028 | G | A |
rs11200638 | 18164066 | 5654 | HTRA1 | umls:C0024437 | BeFree | The coding HTRA1 SNP rs2293870, not part of the significant haplotypes containing rs10490924 and rs11200638, showed as strong an association with increased susceptibility to neovascular AMD. | 0.005428837 | 2008 | HTRA1;LOC105378525 | 10 | 122461028 | G | A |
rs11200638 | 24080590 | 7422 | VEGFA | umls:C0024437 | BeFree | Genotypes of 3 polymorphisms in known AMD susceptibility loci (rs1061170 in complement factor H (CFH), rs11200638 in HTRA1 and rs1413711 in VEGF) were determined. | 0.004614512 | 2013 | HTRA1;LOC105378525 | 10 | 122461028 | G | A |
rs11200638 | 25277308 | 5654 | HTRA1 | umls:C0024437 | BeFree | Furthermore, FPR1 rs78488639 CA combining with HTRA1 rs11200638 and smoking was also predisposed risks to exudative AMD and PCV. | 0.005428837 | 2014 | HTRA1;LOC105378525 | 10 | 122461028 | G | A |
rs11200638 | 22491416 | 387715 | ARMS2 | umls:C0024437 | BeFree | After adjusting for rs11200638, ARMS2 rs10490924 remained significantly associated with exudative AMD (P = 0.011), but not with PCV (P = 0.077). | 0.007057489 | 2012 | HTRA1;LOC105378525 | 10 | 122461028 | G | A |
rs11200638 | 24080590 | 3075 | CFH | umls:C0024437 | BeFree | Genotypes of 3 polymorphisms in known AMD susceptibility loci (rs1061170 in complement factor H (CFH), rs11200638 in HTRA1 and rs1413711 in VEGF) were determined. | 0.011129117 | 2013 | HTRA1;LOC105378525 | 10 | 122461028 | G | A |
rs11200638 | 24393350 | 3075 | CFH | umls:C0024437 | BeFree | Eight single nucleotide polymorphisms (SNPs) from 6 genes of the HDL metabolism pathway and 2 known AMD-associated SNPs, rs800292 (from complement factor H [CFH]) and rs11200638 (from HtrA serine peptidase 1 [HTRA1]), were genotyped in all study subjects using the TaqMan genotyping technology (Applied Biosystems, Foster City, CA). | 0.011129117 | 2013 | HTRA1;LOC105378525 | 10 | 122461028 | G | A |
rs11200638 | 23260260 | 5654 | HTRA1 | umls:C0024437 | BeFree | The association of SKIV2L rs429608 with neovascular AMD remained significant after adjusting for CFH rs800292 and HTRA1 rs11200638. | 0.005428837 | 2013 | HTRA1;LOC105378525 | 10 | 122461028 | G | A |
rs11200638 | 18164066 | 387715 | ARMS2 | umls:C0024437 | BeFree | Many single-nucleotide polymorphisms (SNPs), including the previously reported variants rs10490924 (hypothetical LOC387715/ARMS2) and rs11200638 (HTRA1), defined 2 significant haplotypes associated with increased risk of neovascular AMD. | 0.007057489 | 2008 | HTRA1;LOC105378525 | 10 | 122461028 | G | A |
rs11200638 | 23260260 | 3075 | CFH | umls:C0024437 | BeFree | The association of SKIV2L rs429608 with neovascular AMD remained significant after adjusting for CFH rs800292 and HTRA1 rs11200638. | 0.011129117 | 2013 | HTRA1;LOC105378525 | 10 | 122461028 | G | A |
rs1136287 | 19503741 | 5176 | SERPINF1 | umls:C0024437 | BeFree | We report a lack of association between the PEDF Met72Thr variant and either neovascular AMD or PCV in a Japanese population. | 0.000814326 | 2009 | SERPINF1 | 17 | 1769982 | C | T |
rs121434491 | 17666404 | 2202 | EFEMP1 | umls:C0024437 | BeFree | The R345W mutation in EFEMP1 is pathogenic and causes AMD-like deposits in mice. | 0.001085767 | 2007 | EFEMP1;LOC105374679 | 2 | 55871091 | G | A |
rs121913059 | 24498017 | 1295 | COL8A1 | umls:C0024437 | BeFree | Three new genetic loci (R1210C in CFH, variants in COL8A1 and RAD51B) are independently related to progression to advanced macular degeneration. | 0.000271442 | 2013 | CFH | 1 | 196747245 | C | T |
rs121913059 | 24498017 | 3075 | CFH | umls:C0024437 | BeFree | Three new genetic loci (R1210C in CFH, variants in COL8A1 and RAD51B) are independently related to progression to advanced macular degeneration. | 0.011129117 | 2013 | CFH | 1 | 196747245 | C | T |
rs121913059 | 24498017 | 5890 | RAD51B | umls:C0024437 | BeFree | Three new genetic loci (R1210C in CFH, variants in COL8A1 and RAD51B) are independently related to progression to advanced macular degeneration. | 0.000271442 | 2013 | CFH | 1 | 196747245 | C | T |
rs1410996 | 19850835 | 3075 | CFH | umls:C0024437 | BeFree | The data suggest that the noncoding variant rs1410996 of the CFH gene moderately increased the risk of exudative AMD in a Chinese population. | 0.011129117 | 2010 | CFH | 1 | 196727803 | G | A |
rs1410996 | 23534868 | 387715 | ARMS2 | umls:C0024437 | BeFree | CFH (rs1410996), HTRA1 (rs112000638) and ARMS2 (rs10490923) gene polymorphisms are associated with AMD risk in Spanish patients. | 0.007057489 | 2014 | CFH | 1 | 196727803 | G | A |
rs1410996 | 23534868 | 3075 | CFH | umls:C0024437 | BeFree | CFH (rs1410996), HTRA1 (rs112000638) and ARMS2 (rs10490923) gene polymorphisms are associated with AMD risk in Spanish patients. | 0.011129117 | 2014 | CFH | 1 | 196727803 | G | A |
rs1410996 | 23534868 | 5654 | HTRA1 | umls:C0024437 | BeFree | CFH (rs1410996), HTRA1 (rs112000638) and ARMS2 (rs10490923) gene polymorphisms are associated with AMD risk in Spanish patients. | 0.005428837 | 2014 | CFH | 1 | 196727803 | G | A |
rs1413711 | 24080590 | 3075 | CFH | umls:C0024437 | BeFree | Genotypes of 3 polymorphisms in known AMD susceptibility loci (rs1061170 in complement factor H (CFH), rs11200638 in HTRA1 and rs1413711 in VEGF) were determined. | 0.011129117 | 2013 | VEGFA | 6 | 43772941 | T | C |
rs1413711 | 24080590 | 7422 | VEGFA | umls:C0024437 | BeFree | Genotypes of 3 polymorphisms in known AMD susceptibility loci (rs1061170 in complement factor H (CFH), rs11200638 in HTRA1 and rs1413711 in VEGF) were determined. | 0.004614512 | 2013 | VEGFA | 6 | 43772941 | T | C |
rs148957473 | 16384943 | 30813 | VSX1 | umls:C0024437 | BeFree | H244R VSX1 is associated with selective cone ON bipolar cell dysfunction and macular degeneration in a PPCD family. | 0.000271442 | 2006 | VSX1 | 20 | 25077762 | T | C |
rs1801133 | 22065928 | 2006 | ELN | umls:C0024437 | BeFree | In contrast, there were significant differences in the genotype distribution between the controls and nAMD patients only for rs2301995 (ELN, p=0.022) and rs1801133 (MTHFR, p=2.50×10(-3)). | 0.000814326 | 2011 | MTHFR | 1 | 11796321 | G | A |
rs1870377 | 22919317 | 7422 | VEGFA | umls:C0024437 | BeFree | Two SNPs (rs2071559 and rs1870377) of VEGF-A receptor-2 (VEGFR-2) gene were analyzed with the technique of Real-Time PCR to investigate a genetic link between AMD and VEGFR-2 gene polymorphisms in Italian patients. | 0.004614512 | 2012 | KDR | 4 | 55106807 | T | A |
rs2014307 | 18541031 | 5654 | HTRA1 | umls:C0024437 | BeFree | Other than variants on 1q32-q22, only two SNPs, rs9288410 (MAP2) on 2q34-q35 and rs2014307 (PLEKHA1/HTRA1) on 10q26 were significantly associated with AMD status (P = .03 and P < 10-6 respectively). | 0.005428837 | 2008 | LOC105378525 | 10 | 122458116 | T | G |
rs2071559 | 22919317 | 3791 | KDR | umls:C0024437 | BeFree | In conclusion, although with the limitations of a small sample size and the few SNPs studied, this study demonstrates a lower frequency of VEGFR-2 rs2071559 AA genotype in an AMD patient population, suggesting future studies on the role VEGFR-2 SNPs. | 0.001357209 | 2012 | KDR | 4 | 55126199 | A | G |
rs2071559 | 22919317 | 7422 | VEGFA | umls:C0024437 | BeFree | Two SNPs (rs2071559 and rs1870377) of VEGF-A receptor-2 (VEGFR-2) gene were analyzed with the technique of Real-Time PCR to investigate a genetic link between AMD and VEGFR-2 gene polymorphisms in Italian patients. | 0.004614512 | 2012 | KDR | 4 | 55126199 | A | G |
rs2293870 | 18164066 | 5654 | HTRA1 | umls:C0024437 | BeFree | The coding HTRA1 SNP rs2293870, not part of the significant haplotypes containing rs10490924 and rs11200638, showed as strong an association with increased susceptibility to neovascular AMD. | 0.005428837 | 2008 | HTRA1;LOC105378525 | 10 | 122461760 | G | C,T |
rs2301995 | 22065928 | 2006 | ELN | umls:C0024437 | BeFree | In contrast, there were significant differences in the genotype distribution between the controls and nAMD patients only for rs2301995 (ELN, p=0.022) and rs1801133 (MTHFR, p=2.50×10(-3)). | 0.000814326 | 2011 | ELN | 7 | 74037810 | G | A |
rs3732378 | 21621535 | 1524 | CX3CR1 | umls:C0024437 | BeFree | No association between the T280M polymorphism of the CX3CR1 gene and exudative AMD. | 0.000814326 | 2011 | CX3CR1 | 3 | 39265671 | G | A |
rs380390 | 16754848 | 3075 | CFH | umls:C0024437 | BeFree | ERCC6 C-6530>G was associated with AMD susceptibility, both independently and through interaction with an SNP (rs380390) in the complement factor H (CFH) intron reported to be highly associated with AMD. | 0.011129117 | 2006 | CFH | 1 | 196731921 | G | T,C |
rs4151667 | 19899988 | 629 | CFB | umls:C0024437 | BeFree | Furthermore, the C allele of the CFH rs1061170, but not the CFB rs4151667 and rs641153, was significnatly associated with increased risk for AMD (OR 3.09, 95% CI 1.55-6.15, p < 0.001). | 0.000814326 | 2009 | CFB | 6 | 31946247 | T | A |
rs4151667 | 19899988 | 3075 | CFH | umls:C0024437 | BeFree | Furthermore, the C allele of the CFH rs1061170, but not the CFB rs4151667 and rs641153, was significnatly associated with increased risk for AMD (OR 3.09, 95% CI 1.55-6.15, p < 0.001). | 0.011129117 | 2009 | CFB | 6 | 31946247 | T | A |
rs429608 | 24865191 | 387715 | ARMS2 | umls:C0024437 | BeFree | After adjusting for age, gender, ARMS2 A69S, and CFHI62V, the A allele of rs429608 was significantly protective against neovascular AMD (odds ratio [OR] 0.24, 95% confidence interval [CI] 0.122-0.484, p < 0.001), PCV (OR 0.43, 95% CI 0.262-0.704, p = 0.001), RAP (OR 0.09, 95% CI 0.014-0.581, p = 0.011). | 0.007057489 | 2015 | SKIV2L | 6 | 31962685 | G | A |
rs429608 | 23260260 | 5654 | HTRA1 | umls:C0024437 | BeFree | The association of SKIV2L rs429608 with neovascular AMD remained significant after adjusting for CFH rs800292 and HTRA1 rs11200638. | 0.005428837 | 2013 | SKIV2L | 6 | 31962685 | G | A |
rs429608 | 23260260 | 3075 | CFH | umls:C0024437 | BeFree | The association of SKIV2L rs429608 with neovascular AMD remained significant after adjusting for CFH rs800292 and HTRA1 rs11200638. | 0.011129117 | 2013 | SKIV2L | 6 | 31962685 | G | A |
rs429608 | 23260260 | 7936 | NELFE | umls:C0024437 | BeFree | The SKIV2L SNPs rs429608 and rs453821 were significantly associated with neovascular AMD (P = 7.39 × 10(-5); odds ratio [OR], 0.22; 95% confidence interval [CI], 0.10-0.50; and P = 0.001; OR, 0.38; 95% CI, 0.21-0.70, respectively), whereas borderline associations were detected for C2 rs547154 (P = 0.002) and RDBP rs760070 (P = 0.003). | 0.000271442 | 2013 | SKIV2L | 6 | 31962685 | G | A |
rs453821 | 23260260 | 7936 | NELFE | umls:C0024437 | BeFree | The SKIV2L SNPs rs429608 and rs453821 were significantly associated with neovascular AMD (P = 7.39 × 10(-5); odds ratio [OR], 0.22; 95% confidence interval [CI], 0.10-0.50; and P = 0.001; OR, 0.38; 95% CI, 0.21-0.70, respectively), whereas borderline associations were detected for C2 rs547154 (P = 0.002) and RDBP rs760070 (P = 0.003). | 0.000271442 | 2013 | SKIV2L | 6 | 31967534 | C | T |
rs547154 | 23260260 | 7936 | NELFE | umls:C0024437 | BeFree | The SKIV2L SNPs rs429608 and rs453821 were significantly associated with neovascular AMD (P = 7.39 × 10(-5); odds ratio [OR], 0.22; 95% confidence interval [CI], 0.10-0.50; and P = 0.001; OR, 0.38; 95% CI, 0.21-0.70, respectively), whereas borderline associations were detected for C2 rs547154 (P = 0.002) and RDBP rs760070 (P = 0.003). | 0.000271442 | 2013 | C2;C2-AS1 | 6 | 31943161 | G | T |
rs61755792 | 9810570 | 5961 | PRPH2 | umls:C0024437 | BeFree | Earlier, the peripherin/RDS Arg-172-Trp mutation was associated primarily with a macular degeneration phenotype. | 0.001628651 | 1998 | PRPH2 | 6 | 42721821 | G | C,A |
rs61755792 | 9810570 | 5630 | PRPH | umls:C0024437 | BeFree | Earlier, the peripherin/RDS Arg-172-Trp mutation was associated primarily with a macular degeneration phenotype. | 0.000814326 | 1998 | PRPH2 | 6 | 42721821 | G | C,A |
rs61755792 | 24463884 | 5961 | PRPH2 | umls:C0024437 | BeFree | Insights into the mechanisms of macular degeneration associated with the R172W mutation in RDS. | 0.001628651 | 2015 | PRPH2 | 6 | 42721821 | G | C,A |
rs641153 | 19899988 | 3075 | CFH | umls:C0024437 | BeFree | Furthermore, the C allele of the CFH rs1061170, but not the CFB rs4151667 and rs641153, was significnatly associated with increased risk for AMD (OR 3.09, 95% CI 1.55-6.15, p < 0.001). | 0.011129117 | 2009 | CFB | 6 | 31946403 | G | T,A |
rs641153 | 19899988 | 629 | CFB | umls:C0024437 | BeFree | Furthermore, the C allele of the CFH rs1061170, but not the CFB rs4151667 and rs641153, was significnatly associated with increased risk for AMD (OR 3.09, 95% CI 1.55-6.15, p < 0.001). | 0.000814326 | 2009 | CFB | 6 | 31946403 | G | T,A |
rs760070 | 23260260 | 7936 | NELFE | umls:C0024437 | BeFree | The SKIV2L SNPs rs429608 and rs453821 were significantly associated with neovascular AMD (P = 7.39 × 10(-5); odds ratio [OR], 0.22; 95% confidence interval [CI], 0.10-0.50; and P = 0.001; OR, 0.38; 95% CI, 0.21-0.70, respectively), whereas borderline associations were detected for C2 rs547154 (P = 0.002) and RDBP rs760070 (P = 0.003). | 0.000271442 | 2013 | CFB;NELFE | 6 | 31952179 | T | C |
rs78488639 | 25277308 | 3075 | CFH | umls:C0024437 | BeFree | Combined heterozygous risk alleles of CFH rs800292 GA and FPR1 rs78488639 CA were posed to PCV (P=2.22 × 10(-4), OR=10.47), but not exudative AMD. | 0.011129117 | 2014 | FPR1 | 19 | 51746706 | G | A,T |
rs78488639 | 25277308 | 5654 | HTRA1 | umls:C0024437 | BeFree | Furthermore, FPR1 rs78488639 CA combining with HTRA1 rs11200638 and smoking was also predisposed risks to exudative AMD and PCV. | 0.005428837 | 2014 | FPR1 | 19 | 51746706 | G | A,T |
rs800292 | 25277308 | 3075 | CFH | umls:C0024437 | BeFree | Combined heterozygous risk alleles of CFH rs800292 GA and FPR1 rs78488639 CA were posed to PCV (P=2.22 × 10(-4), OR=10.47), but not exudative AMD. | 0.011129117 | 2014 | CFH | 1 | 196673103 | G | A |
rs800292 | 23260260 | 3075 | CFH | umls:C0024437 | BeFree | The association of SKIV2L rs429608 with neovascular AMD remained significant after adjusting for CFH rs800292 and HTRA1 rs11200638. | 0.011129117 | 2013 | CFH | 1 | 196673103 | G | A |
rs800292 | 24393350 | 3075 | CFH | umls:C0024437 | BeFree | Eight single nucleotide polymorphisms (SNPs) from 6 genes of the HDL metabolism pathway and 2 known AMD-associated SNPs, rs800292 (from complement factor H [CFH]) and rs11200638 (from HtrA serine peptidase 1 [HTRA1]), were genotyped in all study subjects using the TaqMan genotyping technology (Applied Biosystems, Foster City, CA). | 0.011129117 | 2013 | CFH | 1 | 196673103 | G | A |
rs800292 | 23260260 | 5654 | HTRA1 | umls:C0024437 | BeFree | The association of SKIV2L rs429608 with neovascular AMD remained significant after adjusting for CFH rs800292 and HTRA1 rs11200638. | 0.005428837 | 2013 | CFH | 1 | 196673103 | G | A |
rs800292 | 24393350 | 5654 | HTRA1 | umls:C0024437 | BeFree | Eight single nucleotide polymorphisms (SNPs) from 6 genes of the HDL metabolism pathway and 2 known AMD-associated SNPs, rs800292 (from complement factor H [CFH]) and rs11200638 (from HtrA serine peptidase 1 [HTRA1]), were genotyped in all study subjects using the TaqMan genotyping technology (Applied Biosystems, Foster City, CA). | 0.005428837 | 2013 | CFH | 1 | 196673103 | G | A |
rs9288410 | 18541031 | 5654 | HTRA1 | umls:C0024437 | BeFree | Other than variants on 1q32-q22, only two SNPs, rs9288410 (MAP2) on 2q34-q35 and rs2014307 (PLEKHA1/HTRA1) on 10q26 were significantly associated with AMD status (P = .03 and P < 10-6 respectively). | 0.005428837 | 2008 | MAP2 | 2 | 209633537 | G | A |
GWASdb Annotation(Total Genotypes:0) | |
---|---|
(Waiting for update.) |
GWASdb Snp Trait(Total Genotypes:0) | |
---|---|
(Waiting for update.) |
Mapped by lexical matching(Total Items:0) |
---|
(Waiting for update.) |
Mapped by homologous gene(Total Items:0) |
---|
(Waiting for update.) |
Disease ID | 319 |
---|---|
Disease | macular degeneration |
Case | (Waiting for update.) |