glycogen storage disease vi |
Disease ID | 1758 |
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Disease | glycogen storage disease vi |
Manually Symptom | (Waiting for update.) |
Text Mined Symptom | (Waiting for update.) |
Manually Genotype(Total Text Mining Genotypes:0) |
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(Waiting for update.) |
Text Mining Genotype(Total Genotypes:0) | |
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(Waiting for update.) |
All Snps(Total Genotypes:25) | |||||||||||||
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snpId | pubmedId | geneId | geneSymbol | diseaseId | sourceId | sentence | score | Year | geneSymbol_dbSNP | CHROMOSOME | POS | REF | ALT |
rs113993972 | NA | 5836 | PYGL | umls:C0017925 | CLINVAR | NA | 0.480271442 | NA | PYGL;LOC105370492 | 14 | 50944366 | T | G |
rs113993973 | NA | 5836 | PYGL | umls:C0017925 | CLINVAR | NA | 0.480271442 | NA | PYGL | 14 | 50937801 | G | A |
rs113993974 | NA | 5836 | PYGL | umls:C0017925 | CLINVAR | NA | 0.480271442 | NA | PYGL | 14 | 50924101 | C | G |
rs113993975 | NA | 5836 | PYGL | umls:C0017925 | CLINVAR | NA | 0.480271442 | NA | PYGL | 14 | 50921030 | C | T |
rs113993976 | NA | 5836 | PYGL | umls:C0017925 | CLINVAR | NA | 0.480271442 | NA | PYGL | 14 | 50916718 | T | C |
rs113993977 | NA | 5836 | PYGL | umls:C0017925 | CLINVAR | NA | 0.480271442 | NA | PYGL | 14 | 50915933 | G | C |
rs113993978 | NA | 5836 | PYGL | umls:C0017925 | CLINVAR | NA | 0.480271442 | NA | PYGL | 14 | 50915869 | G | A |
rs113993979 | NA | 5836 | PYGL | umls:C0017925 | CLINVAR | NA | 0.480271442 | NA | PYGL | 14 | 50915373 | C | T |
rs113993980 | NA | 5836 | PYGL | umls:C0017925 | CLINVAR | NA | 0.480271442 | NA | PYGL | 14 | 50914748 | G | A |
rs113993981 | NA | 5836 | PYGL | umls:C0017925 | CLINVAR | NA | 0.480271442 | NA | PYGL | 14 | 50913028 | C | T,G |
rs113993982 | NA | 5836 | PYGL | umls:C0017925 | CLINVAR | NA | 0.480271442 | NA | PYGL | 14 | 50912155 | C | T,G |
rs113993983 | NA | 5836 | PYGL | umls:C0017925 | CLINVAR | NA | 0.480271442 | NA | PYGL | 14 | 50911804 | T | A |
rs113993984 | NA | 5836 | PYGL | umls:C0017925 | CLINVAR | NA | 0.480271442 | NA | PYGL | 14 | 50910055 | C | T |
rs113993985 | NA | 5836 | PYGL | umls:C0017925 | CLINVAR | NA | 0.480271442 | NA | PYGL | 14 | 50910049 | A | T |
rs113993986 | NA | 5836 | PYGL | umls:C0017925 | CLINVAR | NA | 0.480271442 | NA | PYGL | 14 | 50910048 | G | C,A |
rs113993987 | NA | 5836 | PYGL | umls:C0017925 | CLINVAR | NA | 0.480271442 | NA | PYGL | 14 | 50910030 | T | G |
rs113993988 | NA | 5836 | PYGL | umls:C0017925 | CLINVAR | NA | 0.480271442 | NA | PYGL | 14 | 50905475 | A | G |
rs150547274 | NA | 5836 | PYGL | umls:C0017925 | CLINVAR | NA | 0.480271442 | NA | PYGL | 14 | 50911752 | G | T |
rs35026927 | NA | 5836 | PYGL | umls:C0017925 | CLINVAR | NA | 0.480271442 | NA | PYGL | 14 | 50911799 | C | G,A |
rs386626619 | 19564637 | 3717 | JAK2 | umls:C0017925 | BeFree | In a patient with 2 TET2 mutations, the analysis of 5 blood samples at different phases of her disease showed the sequential occurrence of JAK2(V617F) and TET2 mutations concomitantly to the disease evolution. | 0.000271442 | 2009 | NA | NA | NA | NA | NA |
rs386626619 | 19564637 | 54790 | TET2 | umls:C0017925 | BeFree | In a patient with 2 TET2 mutations, the analysis of 5 blood samples at different phases of her disease showed the sequential occurrence of JAK2(V617F) and TET2 mutations concomitantly to the disease evolution. | 0.000271442 | 2009 | NA | NA | NA | NA | NA |
rs529502292 | NA | 5836 | PYGL | umls:C0017925 | CLINVAR | NA | 0.480271442 | NA | PYGL | 14 | 50912275 | - | G |
rs77375493 | 19564637 | 3717 | JAK2 | umls:C0017925 | BeFree | In a patient with 2 TET2 mutations, the analysis of 5 blood samples at different phases of her disease showed the sequential occurrence of JAK2(V617F) and TET2 mutations concomitantly to the disease evolution. | 0.000271442 | 2009 | JAK2;INSL6 | 9 | 5073770 | G | A,T |
rs77375493 | 19564637 | 54790 | TET2 | umls:C0017925 | BeFree | In a patient with 2 TET2 mutations, the analysis of 5 blood samples at different phases of her disease showed the sequential occurrence of JAK2(V617F) and TET2 mutations concomitantly to the disease evolution. | 0.000271442 | 2009 | JAK2;INSL6 | 9 | 5073770 | G | A,T |
rs786204785 | NA | 5836 | PYGL | umls:C0017925 | CLINVAR | NA | 0.480271442 | NA | PYGL;LOC105370492 | 14 | 50944359 | - | CTGATCTGCCGCCGCTTCTC |
GWASdb Annotation(Total Genotypes:7) | |||||||||||||||||||||||||||||||||||||
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Chr | Pos | SNP_Id | RefGene | EnsemblGene | ENCODE_Factor | ENCODE_TFBS | Chromosome_interaction | GTEx_eQTL | SNP_TFBS_affinity_GWAS3D | SNP_miRNA_target_affinity_PolymiRTS | SNP_splicing_effect_Skippy | SNP_splicing_effect_MutPred_Splice | SNP_ns_protein_effect_dbNSFP | SNP_syn_effect_Silva | SNP_phosphorylation_effect_PhosSNP | PhastCons_score | PhyloP_score | GERP++_RS | Segway_state | Ancestral_allele | ESP_AF | ESP_AFR | ESP_AFR | ESP_EUR | TG_ASN | TG_AMR | TG_AFR | TG_EUR | Type | Consequence | bStatistic | EncH3K27Ac | EncH3K4Me1 | EncH3K4Me3 | EncNucleo | OMIM | Clinvar |
14 | 51372606 | rs2027341 | NM_002863,PYGL | NM_001163940,PYGL | NM_181533,ABHD12B | NM_181814,ABHD12B | NM_001206673,ABHD12B | ENST00000501589,ENSG00000247448 | ENST00000532462,ENSG00000100504 | ENST00000531889,ENSG00000100504 | ENST00000216392,ENSG00000100504 | ENST00000395752,ENSG00000131969 | ENST00000337334,ENSG00000131969 | ENST00000353130,ENSG00000131969 | NA | NA | chr14,51370001,51380000,chr7,6620001,6630000,4,Hi-C | chr14,51370001,51380000,chr19,21500001,21510000,4,Hi-C | chr14,51370001,51380000,chr1,70120001,70130000,6,Hi-C | chr14,51370001,51380000,chr15,101500001,101510000,7,Hi-C | chr14,51370001,51380000,chr14,41330001,41340000,16,Hi-C | NA | Fhl1-DBD-primary,2.8096 | Rph1-primary,2.5052 | Six3_1732,1.3552 | Six6_2267,1.4049 | LM15,2.8134 | NA | NA | NA | NA | NA | NA | 0.000 | 0.451 | 1.81 | R0 |
14 | 51375250 | rs2356535 | NM_002863,PYGL | NM_001163940,PYGL | ENST00000501589,ENSG00000247448 | ENST00000532462,ENSG00000100504 | ENST00000531889,ENSG00000100504 | ENST00000216392,ENSG00000100504 | ENST00000532107,ENSG00000100504 | NA | NA | chr14,51370001,51380000,chr7,6620001,6630000,4,Hi-C | chr14,51370001,51380000,chr19,21500001,21510000,4,Hi-C | chr14,51370001,51380000,chr1,70120001,70130000,6,Hi-C | chr14,51370001,51380000,chr15,101500001,101510000,7,Hi-C | chr14,51370001,51380000,chr14,41330001,41340000,16,Hi-C | NA | LM33,1.8665 | LM50,2.1479 | LM89,2.6082 | LM101,6.7309 | LM103,3.9145 | NA | NA | NA | NA | NA | NA | 0.000 | -0.217 | -1.68 | R3 | T | NA | NA | NA | NA |
14 | 51376237 | rs10132049 | NM_002863,PYGL | NM_001163940,PYGL | ENST00000501589,ENSG00000247448 | ENST00000532462,ENSG00000100504 | ENST00000531889,ENSG00000100504 | ENST00000216392,ENSG00000100504 | ENST00000528757,ENSG00000100504 | ENST00000532107,ENSG00000100504 | NA | NA | chr14,51370001,51380000,chr7,6620001,6630000,4,Hi-C | chr14,51370001,51380000,chr19,21500001,21510000,4,Hi-C | chr14,51370001,51380000,chr1,70120001,70130000,6,Hi-C | chr14,51370001,51380000,chr15,101500001,101510000,7,Hi-C | chr14,51370001,51380000,chr14,41330001,41340000,16,Hi-C | NA | LM1,2.1323 | LM3,1.3113 | LM93,3.3 | LM113,1.7475 | LM164,8.2774 | NA | NA | NA | NA | NA | NA | 0.000 | -0.702 | -4.03 | F1 | A | NA | NA | NA |
14 | 51387590 | rs946617 | NM_002863,PYGL | NM_001163940,PYGL | ENST00000501589,ENSG00000247448 | ENST00000532462,ENSG00000100504 | ENST00000531889,ENSG00000100504 | ENST00000216392,ENSG00000100504 | TFP.CEBPB | CHMM | TFP.HDAC2 | TFP.RXRA | TFP.FOXA2 | TFP.EP300 | NA | NA | NA | LM94,2.6274 | LM153,4.549 | LM165,2.1921 | LM168,6.8795 | LM187,2.0769 | NA | NA | NA | NA | NA | NA | 0.018 | 2.219 | 2.25 | R2 | T | NA | NA | NA | NA |
14 | 51403531 | rs7142143 | NM_002863,PYGL | NM_001163940,PYGL | ENST00000532462,ENSG00000100504 | ENST00000531889,ENSG00000100504 | ENST00000216392,ENSG00000100504 | ENST00000530336,ENSG00000100504 | ENST00000532698,ENSG00000100504 | NA | NA | chr14,51400001,51410000,chr8,115510001,115520000,6,Hi-C | NA | LM18,3.6216 | LM21,3.0604 | LM61,1.279 | LM87,1.3359 | LM88,2.4895 | NA | NA | NA | NA | NA | NA | 0.000 | -0.126 | 0.503 | L0 | T | NA | NA | NA | NA | NA | NA | NA | NA |
14 | 51407580 | rs1890706 | NM_002863,PYGL | NM_001163940,PYGL | ENST00000532462,ENSG00000100504 | ENST00000531889,ENSG00000100504 | ENST00000216392,ENSG00000100504 | ENST00000530336,ENSG00000100504 | ENST00000532698,ENSG00000100504 | NA | NA | chr14,51400001,51410000,chr8,115510001,115520000,6,Hi-C | NA | LM100,3.5563 | LM199,5.7075 | LM204,1.3616 | Dl_2,26.8648 | ELK4,72.1104 | NA | NA | NA | NA | NA | NA | 0.338 | 0.886 | 2.66 | GE0 | T | NA | NA | NA | NA | NA | NA | NA | NA |
14 | 51411029 | rs17123244 | NM_002863,PYGL | NM_001163940,PYGL | ENST00000532462,ENSG00000100504 | ENST00000531889,ENSG00000100504 | ENST00000216392,ENSG00000100504 | ENST00000530336,ENSG00000100504 | ENST00000532698,ENSG00000100504 | TFP.SMARCC1 | TFP.SMARCB1 | TFP.ZNF263 | TFP.TAF1 | TFP.SIN3A | TFP.ZBTB7A | TFP.EGR1 | TFP.MAX | TFP.EP300 | TFP.HDAC2 | TFP.MYC | TFP.RAD21 | TFP.MXI1 | TFP.HNF4A | TFP.E2F1 | TFP.E2F6 | TFP.ELF1 | TFP.RXRA | TFP.HNF4G | TFP.CTCF | TFP.YY1 | TFP.TBP | TFP.JUND | MCV-25 | TFP.NRF1 | TFP.SP1 | TFP.STAT3 | TFP.FOXA1 |
GWASdb Snp Trait(Total Genotypes:0) | |
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(Waiting for update.) |
Mapped by lexical matching(Total Items:0) |
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(Waiting for update.) |
Mapped by homologous gene(Total Items:0) |
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(Waiting for update.) |
Disease ID | 1758 |
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Disease | glycogen storage disease vi |
Case | (Waiting for update.) |