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eRAM

encyclopedia of Rare Disease Annotation for Precision Medicine



   galactosemia
  

Disease ID 10
Disease galactosemia
Definition
A group of inherited enzyme deficiencies which feature elevations of GALACTOSE in the blood. This condition may be associated with deficiencies of GALACTOKINASE; UDPGLUCOSE-HEXOSE-1-PHOSPHATE URIDYLYLTRANSFERASE; or UDPGLUCOSE 4-EPIMERASE. The classic form is caused by UDPglucose-Hexose-1-Phosphate Uridylyltransferase deficiency, and presents in infancy with FAILURE TO THRIVE; VOMITING; and INTRACRANIAL HYPERTENSION. Affected individuals also may develop MENTAL RETARDATION; JAUNDICE; hepatosplenomegaly; ovarian failure (PRIMARY OVARIAN INSUFFICIENCY); and cataracts. (From Menkes, Textbook of Child Neurology, 5th ed, pp61-3)
Synonym
disorder galactosemia
galactosaemia
galactosaemia nos
galactosaemia, nos
galactose intolerance
galactose intolerance, nos
galactosemia (disorder)
galactosemia (disorder) [ambiguous]
galactosemia nos
galactosemia nos (disorder)
galactosemia, nos
galactosemias
galactosemias [disease/finding]
Orphanet
OMIM
DOID
ICD10
UMLS
C0016952
MeSH
SNOMED-CT
Comorbidity
UMLS | Disease | Sentences' Count(Total Sentences:5)
C0011991  |  diarrhea  |  1
C0013421  |  dystonia  |  1
C0022354  |  cholestatic jaundice  |  1
C0013369  |  infectious diarrhea  |  1
C0086543  |  cataracts  |  1
Curated Gene
Entrez_id | Symbol | Resource(Total Genes:3)
2584  |  GALK1  |  CTD_human;GHR;UNIPROT
2592  |  GALT  |  CTD_human;GHR;UNIPROT
2582  |  GALE  |  CTD_human;GHR;UNIPROT
Inferring Gene
Entrez_id | Symbol | Resource(Total Genes:3)
2592  |  GALT  |  CIPHER;CTD_human
2584  |  GALK1  |  CTD_human
2582  |  GALE  |  CTD_human
Text Mined Gene
Entrez_id | Symbol | Score | Resource(Total Genes:54)
60  |  ACTB  |  1.005  |  DISEASES
55811  |  ADCY10  |  2.31  |  DISEASES
2334  |  AFF2  |  1.243  |  DISEASES
229  |  ALDOB  |  5.931  |  DISEASES
85365  |  ALG2  |  3.686  |  DISEASES
249  |  ALPL  |  1.987  |  DISEASES
250  |  ALPP  |  2.491  |  DISEASES
54840  |  APTX  |  1.522  |  DISEASES
522  |  ATP5J  |  1.699  |  DISEASES
632  |  BGLAP  |  1.971  |  DISEASES
825  |  CAPN3  |  1.125  |  DISEASES
28952  |  CCDC22  |  2.377  |  DISEASES
1012  |  CDH13  |  1.013  |  DISEASES
1268  |  CNR1  |  1.069  |  DISEASES
1415  |  CRYBB2  |  2.066  |  DISEASES
1491  |  CTH  |  1.233  |  DISEASES
5476  |  CTSA  |  1.867  |  DISEASES
1730  |  DIAPH2  |  3.122  |  DISEASES
2272  |  FHIT  |  1.444  |  DISEASES
2332  |  FMR1  |  1.545  |  DISEASES
2582  |  GALE  |  5.42  |  DISEASES
2585  |  GALK2  |  2.89  |  DISEASES
85569  |  GALP  |  2.007  |  DISEASES
2592  |  GALT  |  7.88  |  DISEASES
26301  |  GBGT1  |  4.028  |  DISEASES
50628  |  GEMIN4  |  2.187  |  DISEASES
2701  |  GJA4  |  1.532  |  DISEASES
3033  |  HADH  |  2.822  |  DISEASES
3030  |  HADHA  |  1.562  |  DISEASES
3039  |  HBA1  |  1.791  |  DISEASES
3347  |  HTN3  |  1.359  |  DISEASES
10581  |  IFITM2  |  1.516  |  DISEASES
3486  |  IGFBP3  |  1.311  |  DISEASES
10989  |  IMMT  |  1.525  |  DISEASES
3963  |  LGALS7  |  1.94  |  DISEASES
3988  |  LIPA  |  1.183  |  DISEASES
190  |  NR0B1  |  2.409  |  DISEASES
5053  |  PAH  |  2.923  |  DISEASES
5236  |  PGM1  |  2.187  |  DISEASES
5498  |  PPOX  |  1.524  |  DISEASES
10165  |  SLC25A13  |  4.556  |  DISEASES
51312  |  SLC25A37  |  2.419  |  DISEASES
6514  |  SLC2A2  |  3.193  |  DISEASES
8802  |  SUCLG1  |  2.069  |  DISEASES
9015  |  TAF1A  |  3.335  |  DISEASES
6888  |  TALDO1  |  2.614  |  DISEASES
202018  |  TAPT1  |  3.764  |  DISEASES
6942  |  TCF20  |  1.855  |  DISEASES
7018  |  TF  |  2.363  |  DISEASES
6675  |  UAP1  |  2.459  |  DISEASES
7328  |  UBE2H  |  2.841  |  DISEASES
7360  |  UGP2  |  4.248  |  DISEASES
83889  |  WDR87  |  3.714  |  DISEASES
9278  |  ZBTB22  |  1.378  |  DISEASES
Locus(Waiting for update.)
Disease ID 10
Disease galactosemia
Integrated Phenotype
HPO | Name(Total Integrated Phenotypes:47)
HP:0000044  |  Hypogonadotrophic hypogonadism
HP:0001263  |  Global developmental delay
HP:0002240  |  Enlarged liver
HP:0000518  |  Cataract
HP:0100543  |  Cognitive impairment
HP:0100806  |  Sepsis
HP:0001260  |  Dysarthria
HP:0000083  |  Renal insufficiency
HP:0001251  |  Ataxia
HP:0002014  |  Diarrhea
HP:0001254  |  Lethargy
HP:0002167  |  Neurological speech impairment
HP:0004918  |  Hyperchloremic metabolic acidosis
HP:0001531  |  Failure to thrive in infancy
HP:0001943  |  Hypoglycemia
HP:0012023  |  Galactosuria
HP:0001394  |  Hepatic cirrhosis
HP:0002017  |  Nausea and vomiting
HP:0000952  |  Jaundice
HP:0001541  |  Ascites
HP:0001249  |  Mental retardation
HP:0012024  |  Hypergalactosemia
HP:0001510  |  Growth delay
HP:0001878  |  Hemolytic anemia
HP:0008872  |  Feeding difficulties in infancy
HP:0001250  |  Seizures
HP:0001942  |  Metabolic acidosis
HP:0010741  |  Edema of the lower limbs
HP:0008209  |  Premature ovarian failure
HP:0001399  |  Hepatic failure
HP:0001878  |  Haemolytic anaemia
HP:0001608  |  Abnormality of the voice
HP:0001410  |  Decreased liver function
HP:0000252  |  Microcephaly
HP:0003355  |  Aminoaciduria
HP:0000939  |  Osteoporosis
HP:0001508  |  Weight faltering
HP:0000815  |  Primary hypogonadism
HP:0002240  |  Hepatomegaly
HP:0001939  |  Abnormality of metabolism/homeostasis
HP:0001249  |  Intellectual disability
HP:0011098  |  Speech apraxia
HP:0000505  |  Visual impairment
HP:0001928  |  Abnormality of coagulation
HP:0001337  |  Tremor
HP:0001252  |  Muscular hypotonia
HP:0002013  |  Emesis
Text Mined Phenotype
HPO | Name | Sentences' Count(Total Phenotypes:9)
HP:0000952  |  Yellow skin  |  1
HP:0001337  |  Tremor  |  1
HP:0001332  |  Dystonia  |  1
HP:0002014  |  Diarrhea  |  1
HP:0100806  |  Sepsis  |  1
HP:0000518  |  Cataract  |  1
HP:0004349  |  Reduced bone mineral density  |  1
HP:0002121  |  Petit mal seizures  |  1
HP:0001250  |  Seizures  |  1
Disease ID 10
Disease galactosemia
Manually Symptom
UMLS  | Name(Total Manually Symptoms:18)
C2697388  |  cystathioninuria
C2364324  |  increased intracranial pressure
C2203646  |  jaundice
C1962983  |  cataract
C1623038  |  cirrhosis
C1415538  |  hypergonadotropic hypogonadism
C0747102  |  ovarian failure
C0268306  |  unconjugated hyperbilirubinemia
C0086543  |  cataracts
C0086367  |  resistant ovary syndrome
C0085605  |  liver failure
C0037822  |  speech disorders
C0036690  |  septicemia
C0033845  |  pseudotumor cerebri
C0019080  |  hemorrhage
C0008489  |  chorea
C0005750  |  stasis syndrome
C0003635  |  dyspraxia
Text Mined Symptom
UMLS | Name | Sentences' Count(Total Symptoms:2)
C0022346  |  jaundice  |  1
C0086543  |  cataracts  |  1
Manually Genotype(Total Manually Genotypes:3)
Gene Mutation DOI Article Title
GALTdel 5kb29,30doi:10.1038/gim.2015.123Expanded genetic screening panel for the Ashkenazi Jewish population
GALTQ188R31doi:10.1038/gim.2015.123Expanded genetic screening panel for the Ashkenazi Jewish population
GALTK285Ndoi:10.1038/gim.2015.123Expanded genetic screening panel for the Ashkenazi Jewish population
Text Mining Genotype(Total Genotypes:0)
(Waiting for update.)
All Snps(Total Genotypes:8)
snpId pubmedId geneId geneSymbol diseaseId sourceId sentence score Year geneSymbol_dbSNP CHROMOSOME POS REF ALT
rs11103369093235582592GALTumls:C0016952BeFreeBiochemical characterization of the S135L allele of galactose-1-phosphate uridylyltransferase associated with galactosaemia.0.1530611651997GALT934647858CG,T
rs11103369085514262592GALTumls:C0016952BeFreeThe S135L mutation in the GALT gene is a prevalent cause of galactosemia among black patients.0.1530611651996GALT934647858CG,T
rs111033690115928232592GALTumls:C0016952BeFreeThis mutation was common in black patients with galactosemia and homozygotes (S135L/S135L) had no GALT activity or protein in their erythrocytes or lymphoblasts.0.1530611652001GALT934647858CG,T
rs111033781102201542592GALTumls:C0016952BeFreeIdentification of mutations in the galactose-1-phosphate uridyltransferase (GALT) gene in 16 Turkish patients with galactosemia, including a novel mutation of F294Y. Mutation in brief no. 235. Online.0.1530611651999GALT934649058TA
rs2070074229638872592GALTumls:C0016952BeFreeThe functionally neutral N314D variation in the GALT gene is associated with Duarte galactosemia and is widespread among various worldwide populations.0.1530611652012GALT934649445AG
rs207007492386732592GALTumls:C0016952BeFreeSix out of thirteen (46%) daughters and two mothers of the remaining seven daughters (29%) were carriers for the N314D mutation of GALT associated with the Duarte variant of galactosaemia as compared to 16 out of 113 general population controls (14%) who possessed at least one N314D allele.0.1530611651996GALT934649445AG
rs207007490124092592GALTumls:C0016952BeFreeWe conclude that the codon change N314D in cis with the base-pair transition 1721C-->T produces the LA variant of galactosemia and that this nucleotide change increases GALT activity by increasing GALT protein abundance without increasing transcription or decreasing thermal lability.0.1530611651997GALT934649445AG
rs75391579156891612592GALTumls:C0016952BeFreeHomology modeling studies on human galactose-1-phosphate uridylyltransferase and on its galactosemia-related mutant Q188R provide an explanation of molecular effects of the mutation on homo- and heterodimers.0.1530611652005GALT934648170AG
GWASdb Annotation(Total Genotypes:0)
(Waiting for update.)
GWASdb Snp Trait(Total Genotypes:0)
(Waiting for update.)
Mapped by lexical matching(Total Items:17)
HP ID HP Name MP ID MP Name Annotation
HP:0008872Feeding difficulties in infancyMP:0011075abnormal macrophage activation involved in immune responseanomaly in the process in which a change in response and behavior of a macrophage results from exposure to a cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response
HP:0001608Abnormality of the voiceMP:0013283failure of ventral body wall closurefailure of the lateral body wall folds (a combination of mesoderm and ectoderm arising on each side of the embryo) to progress ventrally and meet in the midline and/or fuse to close the ventral body wall; normally, this closure is aided by growth of the h
HP:0001531Failure to thrive in infancyMP:0020157abnormal behavioral response to alcoholany anomaly in the behavioral response induced by alcohol, such as induced hyperactivity or stereotypic behavior
HP:0000083Renal insufficiencyMP:0003335exocrine pancreatic insufficiencyinadequate synthesis and/or secretion of digestive enzymes by the exocrine portion of the pancreas, usually due to loss of acinar tissue from idiopathic atrophy or acute or chronic inflammation, causing maldigestion and malabsorption of nutrients
HP:0001263Global developmental delayMP:0002084abnormal developmental patterningabnormal systematic arrangement of the developing body along an axis
HP:0001508Failure to thriveMP:0013294prenatal lethality prior to heart atrial septationdeath prior to the completion of heart atrial septation (Mus: E14.5-15.5)
HP:0001942Metabolic acidosisMP:0012551metabolic acidosisdecreased pH and bicarbonate concentration in tissues and/or body fluids caused when the body produces too much acid or when the kidneys are not removing enough acid from the body, as in diarrhea or in kidney disease
HP:0001939Abnormality of metabolism/homeostasisMP:0020010decreased bone mineral density of femurreduction in the quatitative measurment value of mineral content of bone in the long bone of the thigh
HP:0010741Edema of the lower limbsMP:0009657failure of chorioallantoic fusionfailure to initiate and/or complete the formation of a highly vascularized extra-embryonic fetal membrane by fusion of the chorion and allantois
HP:0001252Muscular hypotoniaMP:0004144hypotoniadecreased muscle tension resulting in limpness of the muscles in the resting state, not to be confused with weakness
HP:0001410Decreased liver functionMP:0010398decreased liver glycogen levelless than the normal concentration of a readily converted carbohydrate reserve in liver
HP:0001928Abnormality of coagulationMP:0013283failure of ventral body wall closurefailure of the lateral body wall folds (a combination of mesoderm and ectoderm arising on each side of the embryo) to progress ventrally and meet in the midline and/or fuse to close the ventral body wall; normally, this closure is aided by growth of the h
HP:0001399Hepatic failureMP:0006138congestive heart failurecardiac output is insufficient to supply blood throughout the body, resulting in the accumulation of fluid in the lungs and other body tissues; it is related mainly to salt and water retention in the tissues rather than directly to reduced blood flow; blo
HP:0002017Nausea and vomitingMP:0010426abnormal heart and great artery attachmentany anomaly in the in the position or pattern of the connection site of the heart to any of the great arteries, including the pulmonary artery and aorta
HP:0008209Premature ovarian failureMP:0011125decreased primary ovarian follicle numberfewer than normal numbers of the ovarian follicle prior to the appearance of an antrum, normally marked by developmental changes in the primary oocyte and follicular cells so that the latter form one or more layers of cuboidal or columnar cells; the folli
HP:0001878Hemolytic anemiaMP:0008388hypochromic microcytic anemiahemoglobin deficiency resulting from a reduction in the concentration of hemoglobin in red cells, where the erythrocyte corpuscular volume is smaller than normal
HP:0004918Hyperchloremic metabolic acidosisMP:0012551metabolic acidosisdecreased pH and bicarbonate concentration in tissues and/or body fluids caused when the body produces too much acid or when the kidneys are not removing enough acid from the body, as in diarrhea or in kidney disease
Mapped by homologous gene(Total Items:44)
HP ID HP Name MP ID MP Name Annotation
HP:0001252Muscular hypotoniaMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0001410Decreased liver functionMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000044Hypogonadotrophic hypogonadismMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0001250SeizuresMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0001399Hepatic failureMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0001878Hemolytic anemiaMP:0020154impaired humoral immune responseimpaired response of the immune system that mediates secreted antibodies produced in B cells
HP:0010741Edema of the lower limbsMP:0013258abnormal extracellular matrix morphologyany structural anomaly of the structure lying external to one or more cells, which provides structural support for cells or tissues; in mammals, the extracellular matrix is completely external to the cell
HP:0002240HepatomegalyMP:0020329decreased capillary densityreduction in the number of capillaries in a given cross-sectional area of a tissue
HP:0004918Hyperchloremic metabolic acidosisMP:0012551metabolic acidosisdecreased pH and bicarbonate concentration in tissues and/or body fluids caused when the body produces too much acid or when the kidneys are not removing enough acid from the body, as in diarrhea or in kidney disease
HP:0100543Cognitive impairmentMP:0020316decreased vascular endothelial cell proliferationdecrease in the expansion rate of any vascular endothelial cell population by cell division
HP:0000518CataractMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0001510Growth delayMP:0020169increased thyroid gland weighthigher than average weight of the thyroid gland
HP:0001508Failure to thriveMP:0020234decreased basal metabolismdecrease in heat production of an organism at the lowest level of cell chemistry in an inactive, awake, and fasting state
HP:0003355AminoaciduriaMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0001337TremorMP:0020329decreased capillary densityreduction in the number of capillaries in a given cross-sectional area of a tissue
HP:0000939OsteoporosisMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0001260DysarthriaMP:0020329decreased capillary densityreduction in the number of capillaries in a given cross-sectional area of a tissue
HP:0002014DiarrheaMP:0020220decreased tear productiondecreased production of the amount of fluid produced in the eye
HP:0002017Nausea and vomitingMP:0020220decreased tear productiondecreased production of the amount of fluid produced in the eye
HP:0001541AscitesMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0012024HypergalactosemiaMP:0004018abnormal galactose homeostasisanomaly in the processes involved in the maintenance of an internal equilibrium of galactose in the fluids and tissues
HP:0000952JaundiceMP:0020215impaired blood coagulationimpaired ability of the blood to clot
HP:0100806SepsisMP:0011708decreased fibroblast cell migrationreduced frequency of or less rapid fibroblast cell migration that is accomplished by extension and retraction of a fibroblast pseudopodium
HP:0001263Global developmental delayMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0001943HypoglycemiaMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0001531Failure to thrive in infancyMP:0020157abnormal behavioral response to alcoholany anomaly in the behavioral response induced by alcohol, such as induced hyperactivity or stereotypic behavior
HP:0000083Renal insufficiencyMP:0020316decreased vascular endothelial cell proliferationdecrease in the expansion rate of any vascular endothelial cell population by cell division
HP:0001249Intellectual disabilityMP:0020316decreased vascular endothelial cell proliferationdecrease in the expansion rate of any vascular endothelial cell population by cell division
HP:0001608Abnormality of the voiceMP:0020214susceptible to malignant hyperthermiaincreased susceptibility to hyperthermia triggered by exposure to certain drugs used for general anesthesia, specifically the volatile anesthetic agents and the neuromuscular blocking agent, succinylcholine
HP:0001254LethargyMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0001939Abnormality of metabolism/homeostasisMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0011098Speech apraxiaMP:0011092embryonic lethality, complete penetrancedeath of all organisms of a given genotype in a population within the embryonic period prior to organogenesis (Mus: prior to E14)
HP:0001251AtaxiaMP:0020301short tonguedecreased length of the mobile mass of muscular tissue and surrounding epithelial tissue occupying the cavity of the mouth and forming part of the floor
HP:0008872Feeding difficulties in infancyMP:0020214susceptible to malignant hyperthermiaincreased susceptibility to hyperthermia triggered by exposure to certain drugs used for general anesthesia, specifically the volatile anesthetic agents and the neuromuscular blocking agent, succinylcholine
HP:0002167Neurological speech impairmentMP:0020329decreased capillary densityreduction in the number of capillaries in a given cross-sectional area of a tissue
HP:0001394CirrhosisMP:0020134abnormal gallbladder sizean anomaly in the size of the gall bladder compared to average, the organ that serves as a storage reservoir for bile
HP:0002013VomitingMP:0020316decreased vascular endothelial cell proliferationdecrease in the expansion rate of any vascular endothelial cell population by cell division
HP:0008209Premature ovarian failureMP:0013659abnormal erythroid lineage cell morphologyany structural anomaly of an immature or mature cell in the lineage leading to and including erythrocytes
HP:0001942Metabolic acidosisMP:0014206decreased intestinal epithelial sodium ion transmembrane transport
HP:0000505Visual impairmentMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0001928Abnormality of coagulationMP:0020039increased bone ossificationincrease in the formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance
HP:0000252MicrocephalyMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000815Hypergonadotropic hypogonadismMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0012023GalactosuriaMP:0011100preweaning lethality, complete penetrancedeath of all organisms of a given genotype in a population between fertilization and weaning age (Mus: approximately 3-4 weeks of age)
Disease ID 10
Disease galactosemia
Case(Waiting for update.)