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eRAM

encyclopedia of Rare Disease Annotation for Precision Medicine



   charge syndrome
  

Disease ID 54
Disease charge syndrome
Definition
A rare autosomal dominant syndrome usually caused by mutations in the CHD7 gene. The term CHARGE is an acronym for the following unusual congenital abnormalities that are associated with this syndrome: coloboma of the eye, heart defects, choanal atresia, growth and developmental retardation, genital, and ear abnormalities.
Synonym
association, charge
associations, charge
charge association
charge association (disorder)
charge association--coloboma, heart anomaly, choanal atresia, retardation, genital and ear anomalies
charge associations
charge syndrome [disease/finding]
charge syndromes
coloboma, congenital heart disease, choanal atresia, growth retardation, genital hypoplasia, ear and hearing anomaly syndrome
coloboma, congenital heart disease, choanal atresia, growth retardation, genital hypoplasia, ear and hearing anomaly syndrome (disorder)
coloboma, heart malformation, choanal atresia, retardation of growth and development, genital abnormalities, and ear malformations (charge) association
coloboma, heart malformation, choanal atresia, retardation of growth and development, genital abnormalities, and ear malformations (charge) association (disorder)
coloboma, heart malformation, choanal atresia, retardation of growth and development, genital abnormalities, and ear malformations association
coloboma, heart malformation, choanal atresia, retardation of growth and development, genital abnormalities, and ear malformations association (disorder)
hall hittner syndrome
hall-hittner syndrome
syndrome, charge
syndrome, hall-hittner
Orphanet
OMIM
DOID
UMLS
C0265354
MeSH
SNOMED-CT
Comorbidity
UMLS | Disease | Sentences' Count(Total Sentences:12)
C0037315  |  sleep apnea  |  2
C0004352  |  autism  |  2
C0018784  |  sensorineural hearing loss  |  2
C0520679  |  obstructive sleep apnea  |  2
C0020626  |  hypoparathyroidism  |  1
C0022735  |  hypogonadotropic hypogonadism  |  1
C1519214  |  secondary glioblastoma  |  1
C0020619  |  hypogonadism  |  1
C0456909  |  blindness  |  1
C0017636  |  glioblastoma  |  1
C0796004  |  kabuki syndrome  |  1
C0021053  |  immune dysfunction  |  1
Curated Gene
Entrez_id | Symbol | Resource(Total Genes:2)
55636  |  CHD7  |  CLINVAR;CTD_human;GHR;ORPHANET;UNIPROT
9723  |  SEMA3E  |  CLINVAR;CTD_human;ORPHANET;UNIPROT
Inferring Gene
Entrez_id | Symbol | Resource(Total Genes:2)
55636  |  CHD7  |  CIPHER;CTD_human
9723  |  SEMA3E  |  CTD_human
Text Mined Gene
Entrez_id | Symbol | Score | Resource(Total Genes:66)
58  |  ACTA1  |  1.092  |  DISEASES
86  |  ACTL6A  |  2.867  |  DISEASES
23394  |  ADNP  |  1.862  |  DISEASES
2334  |  AFF2  |  1.425  |  DISEASES
257  |  ALX3  |  1.535  |  DISEASES
9070  |  ASH2L  |  2.38  |  DISEASES
11177  |  BAZ1A  |  3.185  |  DISEASES
55653  |  BCAS4  |  3.192  |  DISEASES
4076  |  CAPRIN1  |  2.795  |  DISEASES
978  |  CDA  |  1.208  |  DISEASES
64072  |  CDH23  |  1.692  |  DISEASES
1106  |  CHD2  |  2.964  |  DISEASES
84181  |  CHD6  |  3.813  |  DISEASES
55636  |  CHD7  |  8.395  |  DISEASES
57680  |  CHD8  |  4.228  |  DISEASES
80205  |  CHD9  |  3.4  |  DISEASES
7401  |  CLRN1  |  2.479  |  DISEASES
157807  |  CLVS1  |  3.511  |  DISEASES
1285  |  COL4A3  |  1.175  |  DISEASES
1297  |  COL9A1  |  2.174  |  DISEASES
64764  |  CREB3L2  |  1.144  |  DISEASES
285489  |  DOK7  |  1.854  |  DISEASES
8813  |  DPM1  |  1.057  |  DISEASES
9343  |  EFTUD2  |  2.384  |  DISEASES
2081  |  ERN1  |  1.279  |  DISEASES
79843  |  FAM124B  |  4.02  |  DISEASES
2187  |  FANCB  |  1.885  |  DISEASES
2200  |  FBN1  |  1.658  |  DISEASES
2253  |  FGF8  |  3.866  |  DISEASES
2260  |  FGFR1  |  3.25  |  DISEASES
2304  |  FOXE1  |  2.719  |  DISEASES
2290  |  FOXG1  |  2.211  |  DISEASES
2737  |  GLI3  |  2.976  |  DISEASES
388585  |  HES5  |  1.777  |  DISEASES
3295  |  HSD17B4  |  1.806  |  DISEASES
3785  |  KCNQ2  |  1.067  |  DISEASES
84678  |  KDM2B  |  2.495  |  DISEASES
3814  |  KISS1  |  1.03  |  DISEASES
11155  |  LDB3  |  1.043  |  DISEASES
4194  |  MDM4  |  1.226  |  DISEASES
4549  |  MT-RNR1  |  2.066  |  DISEASES
4693  |  NDP  |  1.914  |  DISEASES
9378  |  NRXN1  |  1.612  |  DISEASES
64324  |  NSD1  |  1.467  |  DISEASES
8481  |  OFD1  |  1.951  |  DISEASES
10215  |  OLIG2  |  1.124  |  DISEASES
5015  |  OTX2  |  3.344  |  DISEASES
5080  |  PAX6  |  1.488  |  DISEASES
65217  |  PCDH15  |  1.794  |  DISEASES
5649  |  RELN  |  1.005  |  DISEASES
56963  |  RGMA  |  1.598  |  DISEASES
6023  |  RMRP  |  1.846  |  DISEASES
5272  |  SERPINB9  |  1.786  |  DISEASES
6594  |  SMARCA1  |  3.7  |  DISEASES
6597  |  SMARCA4  |  3.056  |  DISEASES
6663  |  SOX10  |  1.925  |  DISEASES
6664  |  SOX11  |  2.499  |  DISEASES
6657  |  SOX2  |  2.67  |  DISEASES
6658  |  SOX3  |  1.763  |  DISEASES
6899  |  TBX1  |  1.908  |  DISEASES
10732  |  TCFL5  |  1.426  |  DISEASES
7009  |  TMBIM6  |  2.092  |  DISEASES
7155  |  TOP2B  |  1.273  |  DISEASES
157680  |  VPS13B  |  1.501  |  DISEASES
11091  |  WDR5  |  1.83  |  DISEASES
151126  |  ZNF385B  |  3.17  |  DISEASES
Locus
Symbol | Locus(Total Locus:2)
SEMA3E  |  7q21.11
CHD7  |  8q12.2
Disease ID 54
Disease charge syndrome
Integrated Phenotype
HPO | Name(Total Integrated Phenotypes:82)
HP:0000044  |  Hypogonadotrophic hypogonadism
HP:0000066  |  Labial hypoplasia
HP:0000028  |  Cryptorchidism
HP:0000160  |  Narrow mouth
HP:0000639  |  Nystagmus
HP:0100736  |  Abnormality of the soft palate
HP:0010978  |  Abnormality of immune system physiology
HP:0000568  |  Microphthalmia
HP:0002553  |  Highly arched eyebrow
HP:0010751  |  Chin dimple
HP:0001601  |  Laryngomalacia
HP:0000722  |  Obsessive-compulsive behavior
HP:0000365  |  Hearing impairment
HP:0000453  |  Choanal atresia
HP:0001360  |  Holoprosencephaly
HP:0002575  |  Tracheoesophageal fistula
HP:0000625  |  Cleft eyelid
HP:0010628  |  Facial palsy
HP:0005280  |  Depressed nasal bridge
HP:0000508  |  Ptosis
HP:0008736  |  Hypoplasia of penis
HP:0001156  |  Brachydactyly syndrome
HP:0002937  |  Hemivertebrae
HP:0007360  |  Aplasia/Hypoplasia of the cerebellum
HP:0000126  |  Hydronephrosis
HP:0002564  |  Malformation of the heart and great vessels
HP:0000486  |  Strabismus
HP:0010443  |  Bifid femur
HP:0000316  |  Hypertelorism
HP:0000204  |  Cleft upper lip
HP:0001643  |  Patent ductus arteriosus
HP:0000359  |  Abnormality of the inner ear
HP:0000684  |  Delayed eruption of teeth
HP:0001636  |  Tetralogy of Fallot
HP:0001511  |  Intrauterine growth retardation
HP:0000772  |  Abnormality of the ribs
HP:0009906  |  Aplasia/Hypoplasia of the earlobes
HP:0000008  |  Abnormality of female internal genitalia
HP:0004348  |  Abnormality of bone mineral density
HP:0011611  |  Interrupted aortic arch
HP:0000384  |  Preauricular skin tag
HP:0000048  |  Bifid scrotum
HP:0000396  |  Overfolded helix
HP:0000076  |  Vesicoureteral reflux
HP:0000478  |  Abnormality of the eye
HP:0000612  |  Iris coloboma
HP:0000632  |  Lacrimation abnormality
HP:0000286  |  Epicanthus
HP:0000175  |  Cleft palate
HP:0000324  |  Facial asymmetry
HP:0000834  |  Abnormality of the adrenal glands
HP:0002020  |  Gastroesophageal reflux
HP:0002093  |  Respiratory insufficiency
HP:0001646  |  Abnormality of the aortic valve
HP:0005113  |  Dilatation of the aortic arch
HP:0000275  |  Narrow face
HP:0000252  |  Microcephaly
HP:0000458  |  Anosmia
HP:0000528  |  Anophthalmia
HP:0002650  |  Scoliosis
HP:0002992  |  Abnormality of the tibia
HP:0007018  |  Attention deficit hyperactivity disorder
HP:0000648  |  Optic atrophy
HP:0004209  |  Clinodactyly of the 5th finger
HP:0000830  |  Anterior hypopituitarism
HP:0000085  |  Horseshoe kidney
HP:0001249  |  Intellectual disability
HP:0001305  |  Dandy-Walker malformation
HP:0000717  |  Autism
HP:0001883  |  Talipes
HP:0000567  |  Chorioretinal coloboma
HP:0000504  |  Abnormality of vision
HP:0002410  |  Aqueductal stenosis
HP:0000368  |  Low-set, posteriorly rotated ears
HP:0006824  |  Cranial nerve paralysis
HP:0001252  |  Muscular hypotonia
HP:0008551  |  Microtia
HP:0008572  |  External ear malformation
HP:0001671  |  Abnormality of the cardiac septa
HP:0008872  |  Feeding difficulties in infancy
HP:0010669  |  Cheekbone underdevelopment
HP:0001561  |  Polyhydramnios
Text Mined Phenotype
HPO | Name | Sentences' Count(Total Phenotypes:23)
Disease ID 54
Disease charge syndrome
Manually Symptom
UMLS  | Name(Total Manually Symptoms:10)
C1744558  |  t cell deficiency
C1274233  |  t-cell immunodeficiency
C0851578  |  sleep disturbances
C0700208  |  scoliosis
C0494752  |  diaphragmatic hernia
C0266589  |  ear anomalies
C0235162  |  sleep difficulties
C0025362  |  mental retardation
C0018784  |  sensorineural hearing loss
C0004352  |  autism
Text Mined Symptom
UMLS | Name | Sentences' Count(Total Symptoms:3)
C0004352  |  autism  |  2
C0018784  |  sensorineural hearing loss  |  2
C0266589  |  ear anomalies  |  1
Manually Genotype(Total Manually Genotypes:4)
Gene Mutation DOI Article Title
CHD7chr8:g.61655471C>T, heterozygous;NM_017780.3, NP_060250.2;c.1480C>T, p.(Arg494*)doi:10.1038/gim.2016.1A prospective evaluation of whole-exome sequencing as a first-tier molecular test in infants with suspected monogenic disorders
CHARGE syndromeCHD7NM_017780, c.5165_5166insC (p.F1722Sfs*15)doi:10.1038/gim.2015.186
CHD7Ex2:c.309G>A / p.(=) (Benign); Ex31:c.6478G>A / p.A2160T (Benign); Ex2:c.856A>G / p.R286Gly (Benign)doi:10.1038/gim.2015.30Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology
CHD7-doi:10.1038/gim.2015.51Clinical performance of the CytoScan Dx Assay in diagnosing developmental delay/intellectual disability
Text Mining Genotype(Total Genotypes:0)
(Waiting for update.)
All Snps(Total Genotypes:53)
snpId pubmedId geneId geneSymbol diseaseId sourceId sentence score Year geneSymbol_dbSNP CHROMOSOME POS REF ALT
rs121434338NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860822627AG
rs121434339NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860830569TG
rs121434340NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860850506CG
rs121434341NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860855993CA
rs121434342NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860836105GT
rs121434343NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860853047GA
rs121434344NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860816389CT
rs121918341NA9723SEMA3Eumls:C0265354CLINVARNA0.36NASEMA3E783367806GA
rs267606724NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860841997CG,T
rs387906271NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7;LOC105375868860801598GC
rs398124321NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860850486GA,T
rs587783428NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860742678GT
rs587783429NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860742912CT
rs587783431NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860741623CAAA-
rs587783432NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860816502GA
rs587783433NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860820036TG
rs587783434NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860821907GT
rs587783436NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860822093AG-
rs587783440NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860837800CT
rs587783441NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860837838AG
rs587783442NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860838202CT
rs587783443NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860841744T-
rs587783445NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860850538TG
rs587783446NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860850546CT
rs587783447NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860851048GT
rs587783448NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860852017AC
rs587783450NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860852882CT
rs587783451NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860853012AG
rs587783454NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860854437CT
rs587783455NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860856532CT
rs587783456NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860856664TCTT-
rs587783457NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860862256CT
rs587783458NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860862322CT
rs587783459NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860862631GA
rs727503863NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860822121GA
rs750047137NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860853254GA
rs786200873NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860852105-A
rs786204200NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860742920-A
rs794727293NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860741901CT
rs794727295NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860742656TCCTCCTCCAC-
rs794727298NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860742897CT
rs794727569NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860856033GA
rs797044725NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860865402-ACCCTCTGTCA
rs797045461NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860781012-G
rs797045463NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860816397-TTATCTTC
rs797045465NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860820035-A
rs797045467NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860845036CT
rs797045468NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860741960-G
rs797045469NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860851292-G
rs797045470NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860853171G-
rs797045471NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860853251G-
rs797045472NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860854412-C
rs797045473NA55636CHD7umls:C0265354CLINVARNA0.587068242NACHD7860862306-TG
GWASdb Annotation(Total Genotypes:0)
(Waiting for update.)
GWASdb Snp Trait(Total Genotypes:0)
(Waiting for update.)
Mapped by lexical matching(Total Items:43)
HP ID HP Name MP ID MP Name Annotation
HP:0001646Abnormality of the aortic valveMP:0012167abnormal epigenetic regulation of gene expressionany anomaly in the process that modulates the frequency, rate or extent of gene expression, in which the process is mitotically or meiotically heritable, or is stably self-propagated in the cytoplasm of a resting cell, and does not entail a change in DNA
HP:0008872Feeding difficulties in infancyMP:0011075abnormal macrophage activation involved in immune responseanomaly in the process in which a change in response and behavior of a macrophage results from exposure to a cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response
HP:0000384Preauricular skin tagMP:0001786skin edemaaccumulation of an excessive amount of fluid in the skin layers or just underneath the skin
HP:0001643Patent ductus arteriosusMP:0011662persistent truncus arteriosus type iicomplete failure of the common arterial trunk opening out of both ventricles to divide into the aorta and pulmonary artery during development; type II is characterized by separate but proximate origins of the left and right pulmonary arterial branches fro
HP:0000085Horseshoe kidneyMP:0011441decreased kidney cell proliferationdecrease in the expansion rate of any kidney cell population by cell division
HP:0000772Abnormality of the ribsMP:0020010decreased bone mineral density of femurreduction in the quatitative measurment value of mineral content of bone in the long bone of the thigh
HP:0000648Optic atrophyMP:0012506brain atrophyacquired diminution of the size of the brain associated with wasting as from death and reabsorbtion of cells, diminished cellular proliferation, decreased cellular volume, pressure, ischemia, malnutrition, reduced function or malfunction, or hormonal chan
HP:0000160Narrow mouthMP:0000452abnormal mouth morphologyany structural anomaly of the oral cavity
HP:0006824Cranial nerve paralysisMP:0006303abnormal retinal nerve fiber layer morphologyany structural anomaly of the layer of the retina formed by expansion of the fibers of the optic nerve
HP:0010978Abnormality of immune system physiologyMP:0011205excessive folding of visceral yolk sacthe appearance of wrinkles or folds on the surface of the visceral yolk sac
HP:0005280Depressed nasal bridgeMP:0013582abnormal lateral nasal gland morphologyany structural anomaly of the lateral nasal glands (the largest nasal secretory glands in rodents) which surround the maxillary sinus located in the lateral wall adjacent to each nasal passage and are characterized by cytologic features similar to those d
HP:0007360Aplasia/Hypoplasia of the cerebellumMP:0012129failure of blastocyst formationinability to form a blastocyst from a solid ball of cells known as a morula
HP:0000453Choanal atresiaMP:0009510cecal atresiacongenital blockage or absence of the lumen of the cecum
HP:0001636Tetralogy of FallotMP:0011665d-loop transposition of the great arteriescomplete transposition of the great arteries; the d- refers to the dextroposition of the bulboventricular loop (ie, the position of the right ventricle, which is on the right side); in addition, the aorta also tends to be on the right and anterior, and th
HP:0004209Clinodactyly of the 5th fingerMP:0011665d-loop transposition of the great arteriescomplete transposition of the great arteries; the d- refers to the dextroposition of the bulboventricular loop (ie, the position of the right ventricle, which is on the right side); in addition, the aorta also tends to be on the right and anterior, and th
HP:0000504Abnormality of visionMP:0012528abnormal zone of polarizing activity morphologyany structural anomaly of the subset of cells found in the posterior mesenchyme region of the vertebrate limb bud; Sonic hedgehog (Shh) produced by ZPA represents the key mediator of the polarizing activity that regulates patterning of the limb along the
HP:0001252Muscular hypotoniaMP:0004144hypotoniadecreased muscle tension resulting in limpness of the muscles in the resting state, not to be confused with weakness
HP:0011611Interrupted aortic archMP:0012493absent pharyngeal arch arteriesabsence of the vessels formed within the six (five in mammals) pairs of branchial arches in embryogenesis; in the adult, some of these vessels give rise to the great vessels
HP:0002575Tracheoesophageal fistulaMP:0003321tracheoesophageal fistulaan abnormal passage is present between the esophagus and the trachea; may be acquired or congenital, and is often associated with esophageal atresia
HP:0000008Abnormality of female internal genitaliaMP:0009403increased variability of skeletal muscle fiber sizegreater range or dispersion within a distribution of skeletal muscle fiber size within a muscle compared to controls
HP:0000722Obsessive-compulsive behaviorMP:0009456impaired cued conditioning behaviordecrease in the ability of an animal to learn and remember an association between an aversive experience (the unconditioned stimulus (US), usually a shock) and a neutral stimulus (the conditioned stimulus (CS), usually an auditory cue or light flash)
HP:0000175Cleft palateMP:0013550abnormal secondary palate morphology
HP:0000830Anterior hypopituitarismMP:0003348hypopituitarismreduction or cessation of secretion of one or more hormones from the anterior pituitary gland; this may result from ablation, tumors, infarction, or other trauma
HP:0001671Abnormality of the cardiac septaMP:0012167abnormal epigenetic regulation of gene expressionany anomaly in the process that modulates the frequency, rate or extent of gene expression, in which the process is mitotically or meiotically heritable, or is stably self-propagated in the cytoplasm of a resting cell, and does not entail a change in DNA
HP:0000478Abnormality of the eyeMP:0012069abnormal horizontal basal cell of olfactory epithelium morphologyany structural anomaly of the flat or angular epithelial cell with condensed nuclei and darkly staining cytoplasm containing numerous intermediate filaments inserted into desmosomes contacting surrounding supporting cells, that lie in contact with the bas
HP:0008572External ear malformationMP:0006286inner ear hypoplasiaunderdevelopment or reduced size of inner ear structures, usually due to decreased cell number
HP:0002992Abnormality of the tibiaMP:0012528abnormal zone of polarizing activity morphologyany structural anomaly of the subset of cells found in the posterior mesenchyme region of the vertebrate limb bud; Sonic hedgehog (Shh) produced by ZPA represents the key mediator of the polarizing activity that regulates patterning of the limb along the
HP:0100736Abnormality of the soft palateMP:0012167abnormal epigenetic regulation of gene expressionany anomaly in the process that modulates the frequency, rate or extent of gene expression, in which the process is mitotically or meiotically heritable, or is stably self-propagated in the cytoplasm of a resting cell, and does not entail a change in DNA
HP:0000048Bifid scrotumMP:0002670absent scrotummissing the external sac of skin that encloses the testes
HP:0007018Attention deficit hyperactivity disorderMP:0001399hyperactivitygeneral restlessness or excessive movement; more frequent movement from one place to another or having an increased state of activity
HP:0000612Iris colobomaMP:0005262colobomaanomaly in which some of the structures of the eye are absent due to incomplete fusion of the fetal intraocular fissure during gestation
HP:0009906Aplasia/Hypoplasia of the earlobesMP:0012167abnormal epigenetic regulation of gene expressionany anomaly in the process that modulates the frequency, rate or extent of gene expression, in which the process is mitotically or meiotically heritable, or is stably self-propagated in the cytoplasm of a resting cell, and does not entail a change in DNA
HP:0000684Delayed eruption of teethMP:0020010decreased bone mineral density of femurreduction in the quatitative measurment value of mineral content of bone in the long bone of the thigh
HP:0000066Labial hypoplasiaMP:0013350Rathke's pouch hypoplasiaunderdevelopment or reduced size of Rathke's pouch, usually due to a reduced number of cells
HP:0001511Intrauterine growth retardationMP:0011109lethality throughout fetal growth and development, incomplete penetrancethe appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms between the completion of organogenesis and birth (Mus: E14 to approximately E18.5)
HP:0000359Abnormality of the inner earMP:0012167abnormal epigenetic regulation of gene expressionany anomaly in the process that modulates the frequency, rate or extent of gene expression, in which the process is mitotically or meiotically heritable, or is stably self-propagated in the cytoplasm of a resting cell, and does not entail a change in DNA
HP:0004348Abnormality of bone mineral densityMP:0020010decreased bone mineral density of femurreduction in the quatitative measurment value of mineral content of bone in the long bone of the thigh
HP:0000076Vesicoureteral refluxMP:0001948vesicoureteral refluxthe retrograde flow of urine from the bladder into the ureters and kidneys
HP:0010669Hypoplasia of the zygomatic boneMP:0011205excessive folding of visceral yolk sacthe appearance of wrinkles or folds on the surface of the visceral yolk sac
HP:0000625Cleft eyelidMP:0003153early eyelid openingearly average time for the first postnatal eye opening
HP:0000204Cleft upper lipMP:0005170cleft upper lipdefect in the upper lip where the maxillary prominence fails to merge with the merged medial nasal prominences
HP:0008736Hypoplasia of penisMP:0013283failure of ventral body wall closurefailure of the lateral body wall folds (a combination of mesoderm and ectoderm arising on each side of the embryo) to progress ventrally and meet in the midline and/or fuse to close the ventral body wall; normally, this closure is aided by growth of the h
HP:0000834Abnormality of the adrenal glandsMP:0009536abnormal interstitial cell of Cajal morphologyany structural anomaly in the type of cell found in the gastrointestinal tract and serving as a pacemaker that triggers gut contraction; ICCs mediate inputs from the enteric nervous system to smooth muscle cells and are thought to be the cells from which
Mapped by homologous gene(Total Items:80)
HP ID HP Name MP ID MP Name Annotation
HP:0001252Muscular hypotoniaMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000632Lacrimation abnormalityMP:0013721abnormal mammary placode morphologyany structural anomaly of the transient lens-shaped thickening of surface ectoderm that will give rise to the mammary bud proper; in mouse, five pairs of symmetrically positioned mammary placodes (three thoracic and two inguinal) form at reproducible loca
HP:0002650ScoliosisMP:0020309increased creatine kinase activityincreased ability of to catalyze the reaction: ATP + creatine = N-phosphocreatine + ADP + 2 H(+).
HP:0001883TalipesMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0004348Abnormality of bone mineral densityMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000528AnophthalmiaMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0001646Abnormality of the aortic valveMP:0013696increased granulocyte monocyte progenitor cell numberincrease in the number of a hematopoietic progenitor cell that is committed to the granulocyte and monocyte lineages; these cells are CD123-positive, and do not express Gata1 or Gata2 but do express C/EBPa, and Pu.1
HP:0000508PtosisMP:0020321increased vascular endothelial cell apoptosisincrease in the timing or the number of vascular endothelial cells undergoing programmed cell death
HP:0000275Narrow faceMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000044Hypogonadotrophic hypogonadismMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000396Overfolded helixMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000048Bifid scrotumMP:0014198absent pituitary infundibular stalkabsence of the apical portion of the tubular structure extending from the hypothalamus to the posterior lobe of the pituitary gland
HP:0000359Abnormality of the inner earMP:0014155absent olfactory epitheliumabsence of the epithelial cells that line the interior of the nose
HP:0000486StrabismusMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000453Choanal atresiaMP:0020234decreased basal metabolismdecrease in heat production of an organism at the lowest level of cell chemistry in an inactive, awake, and fasting state
HP:0000085Horseshoe kidneyMP:0014044absent cardiac outflow tractabsence of or complete failure to form the common arterial trunk that normally forms the aorta and pulmonary artery and the ventricular outflow regions
HP:0010751Chin dimpleMP:0013767decreased palatal rugae numberreduced number of transverse folds (ridges) of the mucosa located on the anterior third part of the secondary (hard) palate of most mammalian species
HP:0000717AutismMP:0020309increased creatine kinase activityincreased ability of to catalyze the reaction: ATP + creatine = N-phosphocreatine + ADP + 2 H(+).
HP:0000567Chorioretinal colobomaMP:0013767decreased palatal rugae numberreduced number of transverse folds (ridges) of the mucosa located on the anterior third part of the secondary (hard) palate of most mammalian species
HP:0008551MicrotiaMP:0020157abnormal behavioral response to alcoholany anomaly in the behavioral response induced by alcohol, such as induced hyperactivity or stereotypic behavior
HP:0000008Abnormality of female internal genitaliaMP:0013785abnormal mammary gland bud morphologyany structural anomaly of the morphologically distinct bulb of epithelial cells formed once each mammary placode expands and invaginates into the underlying mesenchyme; in mouse embryos at E12.5, each epithelial bud with its contiguous mesenchyme is eleva
HP:0009906Aplasia/Hypoplasia of the earlobesMP:0020039increased bone ossificationincrease in the formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance
HP:0100736Abnormality of the soft palateMP:0013767decreased palatal rugae numberreduced number of transverse folds (ridges) of the mucosa located on the anterior third part of the secondary (hard) palate of most mammalian species
HP:0007018Attention deficit hyperactivity disorderMP:0020169increased thyroid gland weighthigher than average weight of the thyroid gland
HP:0000324Facial asymmetryMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0000316HypertelorismMP:0020321increased vascular endothelial cell apoptosisincrease in the timing or the number of vascular endothelial cells undergoing programmed cell death
HP:0000772Abnormality of the ribsMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0002093Respiratory insufficiencyMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0001601LaryngomalaciaMP:0014152absent exorbital lacrimal glandabsence of the large extra-orbital lacrimal gland that, in mice, is normally located subcutaneously at the anteroventral base of the ear adjacent to the parotid gland
HP:0002553Highly arched eyebrowMP:0020157abnormal behavioral response to alcoholany anomaly in the behavioral response induced by alcohol, such as induced hyperactivity or stereotypic behavior
HP:0000625Cleft eyelidMP:0013696increased granulocyte monocyte progenitor cell numberincrease in the number of a hematopoietic progenitor cell that is committed to the granulocyte and monocyte lineages; these cells are CD123-positive, and do not express Gata1 or Gata2 but do express C/EBPa, and Pu.1
HP:0000126HydronephrosisMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0008572External ear malformationMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000204Cleft upper lipMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000028CryptorchidismMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0001511Intrauterine growth retardationMP:0020329decreased capillary densityreduction in the number of capillaries in a given cross-sectional area of a tissue
HP:0000384Preauricular skin tagMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000076Vesicoureteral refluxMP:0014155absent olfactory epitheliumabsence of the epithelial cells that line the interior of the nose
HP:0002410Aqueductal stenosisMP:0014185cerebellum atrophyacquired diminution of the size of the cerebellum associated with wasting as from death and reabsorption of cells, diminished cellular proliferation, decreased cellular volume, pressure, ischemia, malnutrition, reduced function or malfunction, or hormonal
HP:0001305Dandy-Walker malformationMP:0013785abnormal mammary gland bud morphologyany structural anomaly of the morphologically distinct bulb of epithelial cells formed once each mammary placode expands and invaginates into the underlying mesenchyme; in mouse embryos at E12.5, each epithelial bud with its contiguous mesenchyme is eleva
HP:0005280Depressed nasal bridgeMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0000066Labial hypoplasiaMP:0013767decreased palatal rugae numberreduced number of transverse folds (ridges) of the mucosa located on the anterior third part of the secondary (hard) palate of most mammalian species
HP:0002937HemivertebraeMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0007360Aplasia/Hypoplasia of the cerebellumMP:0020039increased bone ossificationincrease in the formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance
HP:0001156Brachydactyly syndromeMP:0020157abnormal behavioral response to alcoholany anomaly in the behavioral response induced by alcohol, such as induced hyperactivity or stereotypic behavior
HP:0001643Patent ductus arteriosusMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000834Abnormality of the adrenal glandsMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0001561PolyhydramniosMP:0020214susceptible to malignant hyperthermiaincreased susceptibility to hyperthermia triggered by exposure to certain drugs used for general anesthesia, specifically the volatile anesthetic agents and the neuromuscular blocking agent, succinylcholine
HP:0001636Tetralogy of FallotMP:0014117increased pancreatic beta cell apoptosisincrease in the number of pancreatic beta cells undergoing programmed cell death
HP:0011611Interrupted aortic archMP:0013504increased embryonic tissue cell apoptosisincrease in the timing or the number of cells in embryonic tissue undergoing programmed cell death
HP:0000612Iris colobomaMP:0013791absent external naresabsence or failure to form both of the anterior openings to the nasal cavity
HP:0000568MicrophthalmiaMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000160Narrow mouthMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0000175Cleft palateMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0001249Intellectual disabilityMP:0020316decreased vascular endothelial cell proliferationdecrease in the expansion rate of any vascular endothelial cell population by cell division
HP:0002992Abnormality of the tibiaMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0005113Dilatation of the aortic archMP:0013293embryonic lethality prior to tooth bud stagedeath prior to the appearance of tooth buds (Mus: E12-E12.5)
HP:0000365Hearing impairmentMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0008872Feeding difficulties in infancyMP:0020214susceptible to malignant hyperthermiaincreased susceptibility to hyperthermia triggered by exposure to certain drugs used for general anesthesia, specifically the volatile anesthetic agents and the neuromuscular blocking agent, succinylcholine
HP:0000722Obsessive-compulsive behaviorMP:0013405increased circulating lactate levelgreater amount of lactate in the blood which is produced from pyruvate by lactate dehydrogenase
HP:0002020Gastroesophageal refluxMP:0014178increased brain apoptosisincrease in the number of cells of the brain undergoing programmed cell death
HP:0002575Tracheoesophageal fistulaMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0001360HoloprosencephalyMP:0014051abnormal maxillary-premaxillary suture morphologyany structural anomaly of the line of union of the two portions of the maxilla (pre- and postmaxilla)
HP:0000639NystagmusMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000684Delayed eruption of teethMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0000286EpicanthusMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0000458AnosmiaMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0001671Abnormality of the cardiac septaMP:0013901absent female preputial glandabsence of the paired, lobulated, modified sebaceous glands located on the side of the clitoris in female rodents; in contrast to the preputial glands in male rodents, clitoral glands are a minor source of olfactory stimuli contributing to sexual attracti
HP:0000368Low-set, posteriorly rotated earsMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0010978Abnormality of immune system physiologyMP:0020316decreased vascular endothelial cell proliferationdecrease in the expansion rate of any vascular endothelial cell population by cell division
HP:0004209Clinodactyly of the 5th fingerMP:0020157abnormal behavioral response to alcoholany anomaly in the behavioral response induced by alcohol, such as induced hyperactivity or stereotypic behavior
HP:0000504Abnormality of visionMP:0013545cleft hard palatecleft in the anterior portion of the palate consisting of bone and mucous membranes; the hard palate is formed from bony processes of the maxilla, premaxilla and palatine bones
HP:0008736Hypoplasia of penisMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0010628Facial palsyMP:0020240increased skeletal muscle cell apoptosisincrease in the number of skeletal muscle cells undergoing programmed cell death
HP:0000478Abnormality of the eyeMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0010669Hypoplasia of the zygomatic boneMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0000252MicrocephalyMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000830Anterior hypopituitarismMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000648Optic atrophyMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0006824Cranial nerve paralysisMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
Disease ID 54
Disease charge syndrome
Case(Waiting for update.)