alexander disease |
Disease ID | 218 |
---|---|
Disease | alexander disease |
Definition | A rare genetic neurodegenerative disorder which belongs to the group of leukodystrophies. It has a slow and progressive clinical course and is characterized by developmental delay, macrocephaly, seizures, dementia and spasticity. |
Synonym | alexander disease [disease/finding] alexander's disease alexander's disease (disorder) alexanders disease alxdrd demyelinogenic leukodystrophy dysmyelinogenic leukodystrophy fibrinoid degeneration of astrocytes fibrinoid leukodystrophy leukodystrophy with rosenthal fibers |
Orphanet | |
OMIM | |
DOID | |
UMLS | C0270726 |
MeSH | |
SNOMED-CT | |
Comorbidity | UMLS | Disease | Sentences' Count(Total Sentences:1) |
Curated Gene | Entrez_id | Symbol | Resource(Total Genes:2) |
Inferring Gene | (Waiting for update.) |
Text Mined Gene | Entrez_id | Symbol | Score | Resource(Total Genes:30) 199 | AIF1 | 1.892 | DISEASES 631 | BFSP1 | 2.734 | DISEASES 1282 | COL4A1 | 1.759 | DISEASES 8450 | CUL4B | 2.517 | DISEASES 1654 | DDX3X | 2.04 | DISEASES 1785 | DNM2 | 1.929 | DISEASES 2170 | FABP3 | 1.195 | DISEASES 2571 | GAD1 | 1.147 | DISEASES 2730 | GCLM | 1.987 | DISEASES 57165 | GJC2 | 2.129 | DISEASES 152007 | GLIPR2 | 3.46 | DISEASES 10013 | HDAC6 | 1.402 | DISEASES 3083 | HGFAC | 1.996 | DISEASES 3316 | HSPB2 | 4.75 | DISEASES 5654 | HTRA1 | 1.608 | DISEASES 3064 | HTT | 1.465 | DISEASES 3766 | KCNJ10 | 1.678 | DISEASES 3908 | LAMA2 | 1.488 | DISEASES 9211 | LGI1 | 1.306 | DISEASES 5599 | MAPK8 | 1.31 | DISEASES 5601 | MAPK9 | 1.254 | DISEASES 2475 | MTOR | 1.737 | DISEASES 4723 | NDUFV1 | 2.75 | DISEASES 10763 | NES | 1.553 | DISEASES 54413 | NLGN3 | 2.413 | DISEASES 5339 | PLEC | 3.525 | DISEASES 5730 | PTGDS | 1.594 | DISEASES 1827 | RCAN1 | 1.762 | DISEASES 6663 | SOX10 | 1.231 | DISEASES 23336 | SYNM | 2.958 | DISEASES |
Locus | (Waiting for update.) |
Disease ID | 218 |
---|---|
Disease | alexander disease |
Integrated Phenotype | HPO | Name(Total Integrated Phenotypes:67) HP:0000639 | Nystagmus HP:0001274 | Agenesis of corpus callosum HP:0000470 | Short neck HP:0100716 | Self-injurious behavior HP:0004481 | Progressively abnormally enlarging cranium HP:0000496 | Abnormality of eye movement HP:0000826 | Precocious puberty HP:0002015 | Dysphagia HP:0007256 | Abnormal pyramidal signs HP:0002019 | Constipation HP:0002376 | Loss of developmental milestones HP:0010628 | Facial palsy HP:0002376 | Developmental regression HP:0000218 | High palate HP:0002072 | Chorea HP:0007162 | Diffuse demyelination of the cerebral white matter HP:0100729 | Large face HP:0001355 | Megalencephaly HP:0002383 | Encephalitis HP:0000508 | Ptosis HP:0001260 | Dysarthria HP:0100247 | Recurrent singultus HP:0001257 | Spasticity HP:0001251 | Ataxia HP:0002007 | Frontal bossing HP:0003307 | Hyperlordosis HP:0002167 | Neurological speech impairment HP:0002615 | Hypotension HP:0000822 | Hypertension HP:0002017 | Nausea and vomiting HP:0007481 | Hyperpigmented nevi HP:0002353 | EEG abnormality HP:0001250 | Seizures HP:0001618 | Dysphonia HP:0000975 | Hyperhidrosis HP:0002483 | Bulbar signs HP:0001288 | Gait disturbance HP:0000256 | Macrocephaly HP:0002093 | Respiratory insufficiency HP:0002607 | Bowel incontinence HP:0002445 | Tetraplegia HP:0002650 | Scoliosis HP:0002169 | Clonus HP:0000938 | Osteopenia HP:0002514 | Cerebral calcification HP:0002808 | Kyphosis HP:0001508 | Failure to thrive HP:0000651 | Diplopia HP:0000712 | Emotional lability HP:0002360 | Sleep disturbance HP:0001249 | Intellectual disability HP:0002459 | Dysautonomia HP:0002045 | Hypothermia HP:0001645 | Sudden cardiac death HP:0001324 | Muscle weakness HP:0001347 | Hyperreflexia HP:0001337 | Tremor HP:0002357 | Dysphasia HP:0002410 | Aqueductal stenosis HP:0000819 | Diabetes mellitus HP:0000238 | Nonsyndromal hydrocephalus HP:0002922 | Increased CSF protein HP:0000716 | Depression HP:0010535 | Sleep apnea HP:0001252 | Muscular hypotonia HP:0000238 | Hydrocephalus HP:0000821 | Hypothyroidism |
Text Mined Phenotype | HPO | Name | Sentences' Count(Total Phenotypes:7) |
Disease ID | 218 |
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Disease | alexander disease |
Manually Symptom | UMLS | Name(Total Manually Symptoms:2) |
Text Mined Symptom | (Waiting for update.) |
Manually Genotype(Total Manually Genotypes:1) | |||
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Gene | Mutation | DOI | Article Title |
GFAP | Chr17:g.42990701C>T, heterozygous;NM_001131019.2, NP_001124491.1;c.716G>A, p.(Arg239His) | doi:10.1038/gim.2016.1 | A prospective evaluation of whole-exome sequencing as a first-tier molecular test in infants with suspected monogenic disorders |
Text Mining Genotype(Total Genotypes:0) | |
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(Waiting for update.) |
All Snps(Total Genotypes:109) | |||||||||||||
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snpId | pubmedId | geneId | geneSymbol | diseaseId | sourceId | sentence | score | Year | geneSymbol_dbSNP | CHROMOSOME | POS | REF | ALT |
rs112611995 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44913433 | G | C |
rs121909717 | 18685083 | 2670 | GFAP | umls:C0270726 | BeFree | Indeed, two other assembly-compromised GFAP constructs, namely enhanced green fluorescent protein (eGFP)-tagged GFAP and the Alexander disease-causing GFAP mutant, R416W GFAP both showed similar in vitro assembly characteristics to GFAP-delta and could also be incorporated into endogenous filament networks in transfected cells, providing expression levels were kept low. | 0.52654694 | 2008 | GFAP | 17 | 44908075 | G | T,A |
rs121909717 | 16826512 | 2670 | GFAP | umls:C0270726 | BeFree | Collectively, these data confirm that the effects of the R416W GFAP are dominant, changing the assembly process in a way that encourages aberrant filament-filament interactions that then lead to protein aggregation and chaperone sequestration as early events in Alexander disease. | 0.52654694 | 2006 | GFAP | 17 | 44908075 | G | T,A |
rs121909717 | 24742911 | 2670 | GFAP | umls:C0270726 | BeFree | The child was found to harbor the R416W mutation, one of the most prevalent mutations in the glial fibrillary acidic protein (GFAP) gene that causes Alexander disease. | 0.52654694 | 2014 | GFAP | 17 | 44908075 | G | T,A |
rs121909717 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44908075 | G | T,A |
rs121909717 | 14550921 | 2670 | GFAP | umls:C0270726 | BeFree | A case of adult-onset Alexander disease with Arg416Trp human glial fibrillary acidic protein gene mutation. | 0.52654694 | 2003 | GFAP | 17 | 44908075 | G | T,A |
rs121909718 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911277 | C | G |
rs121909719 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911751 | C | A |
rs121909720 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915253 | G | T |
rs267607500 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44913430 | C | T,G |
rs267607501 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | NA | NA | NA | NA | NA |
rs267607502 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911266 | T | C |
rs267607503 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911272 | G | A |
rs267607504 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915266 | A | G |
rs267607505 | 17960815 | 2670 | GFAP | umls:C0270726 | BeFree | A novel glial fibrillary acidic protein (GFAP) mutation, Y257C, is reported in a patient with adult-onset Alexander disease. | 0.52654694 | 2008 | GFAP | 17 | 44913279 | T | C |
rs267607505 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44913279 | T | C |
rs267607506 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915240 | A | G |
rs267607507 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44913733 | C | T |
rs267607508 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44908128 | G | T |
rs267607509 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915105 | C | T |
rs267607510 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915278 | C | T |
rs267607511 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911287 | A | G |
rs267607512 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911237 | G | C,A |
rs267607513 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911375 | G | C |
rs267607514 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911369 | C | T |
rs267607515 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911293 | A | T,G |
rs267607516 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915185 | A | G |
rs267607517 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44910638 | G | T,A |
rs267607518 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915228 | C | G,A |
rs267607518 | 21822933 | 2670 | GFAP | umls:C0270726 | BeFree | Late-onset Alexander disease with a V87L mutation in glial fibrillary acidic protein (GFAP) and calcifying lesions in the sub-cortex and cortex. | 0.52654694 | 2012 | GFAP | 17 | 44915228 | C | G,A |
rs267607519 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44913310 | A | G |
rs267607520 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44908071 | T | G |
rs267607521 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44907369 | T | A |
rs267607523 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915273 | C | T |
rs267607525 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44913342 | T | G |
rs267607526 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911252 | C | G |
rs28932768 | 12034796 | 2670 | GFAP | umls:C0270726 | UNIPROT | Juvenile Alexander disease with a novel mutation in glial fibrillary acidic protein gene. | 0.52654694 | 2002 | NA | NA | NA | NA | NA |
rs28932769 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911308 | A | G |
rs56679084 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44913382 | C | G |
rs57120761 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915261 | G | C,A |
rs57120761 | 23364391 | 2670 | GFAP | umls:C0270726 | UNIPROT | Follow-up study of 22 Chinese children with Alexander disease and analysis of parental origin of de novo GFAP mutations. | 0.52654694 | 2013 | GFAP | 17 | 44915261 | G | C,A |
rs57590980 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915257 | T | C |
rs57661783 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44913421 | C | T,A |
rs57815192 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911251 | T | C,A |
rs58008462 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911267 | A | G |
rs58064122 | 23364391 | 2670 | GFAP | umls:C0270726 | UNIPROT | Follow-up study of 22 Chinese children with Alexander disease and analysis of parental origin of de novo GFAP mutations. | 0.52654694 | 2013 | GFAP | 17 | 44913334 | G | A |
rs58064122 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44913334 | G | A |
rs58075601 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911246 | C | T,G |
rs58536923 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911743 | T | C |
rs58645997 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911273 | C | G |
rs58732244 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915258 | T | A |
rs58732244 | 11567214 | 2670 | GFAP | umls:C0270726 | UNIPROT | Infantile Alexander disease: spectrum of GFAP mutations and genotype-phenotype correlation. | 0.52654694 | 2001 | GFAP | 17 | 44915258 | T | A |
rs59285727 | 23364391 | 2670 | GFAP | umls:C0270726 | UNIPROT | Follow-up study of 22 Chinese children with Alexander disease and analysis of parental origin of de novo GFAP mutations. | 0.52654694 | 2013 | GFAP | 17 | 44915251 | C | T,G,A |
rs59285727 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915251 | C | T,G,A |
rs59565950 | 23364391 | 2670 | GFAP | umls:C0270726 | UNIPROT | Follow-up study of 22 Chinese children with Alexander disease and analysis of parental origin of de novo GFAP mutations. | 0.52654694 | 2013 | GFAP | 17 | 44913333 | C | T,G,A |
rs59565950 | 17383133 | 2670 | GFAP | umls:C0270726 | BeFree | R239H mutation of glial fibrillary acidic protein gene was identified, representing a common cause of infantile-type Alexander disease. | 0.52654694 | 2007 | GFAP | 17 | 44913333 | C | T,G,A |
rs59565950 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44913333 | C | T,G,A |
rs59568967 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915197 | A | G |
rs59628143 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911242 | T | C |
rs59661476 | 15030911 | 2670 | GFAP | umls:C0270726 | BeFree | A case of infantile Alexander disease with a milder phenotype and a novel GFAP mutation, L90P. | 0.52654694 | 2004 | GFAP | 17 | 44915218 | A | G |
rs59661476 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915218 | A | G |
rs59793293 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915252 | G | T,C,A |
rs59793293 | 23364391 | 2670 | GFAP | umls:C0270726 | UNIPROT | Follow-up study of 22 Chinese children with Alexander disease and analysis of parental origin of de novo GFAP mutations. | 0.52654694 | 2013 | GFAP | 17 | 44915252 | G | T,C,A |
rs59793293 | 18584981 | 2670 | GFAP | umls:C0270726 | BeFree | We report a patient with infantile Alexander disease (AXD) due to the recurrent p.Arg79Cys GFAP mutation. | 0.52654694 | 2009 | GFAP | 17 | 44915252 | G | T,C,A |
rs59985777 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911371 | A | G |
rs60095124 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915300 | T | G |
rs60269890 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44913345 | A | G |
rs60343255 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915279 | G | A |
rs60449251 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915227 | A | C |
rs60551555 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44913325 | A | C |
rs60551555 | 24003221 | 2670 | GFAP | umls:C0270726 | BeFree | Because K8 Tyr-267 is conserved in many IFs (QYE motif), we tested the effect of the paralogous Tyr in glial fibrillary acidic protein (GFAP), which is mutated in Alexander disease (Y242D). | 0.52654694 | 2013 | GFAP | 17 | 44913325 | A | C |
rs60551555 | 24003221 | 3856 | KRT8 | umls:C0270726 | BeFree | Because K8 Tyr-267 is conserved in many IFs (QYE motif), we tested the effect of the paralogous Tyr in glial fibrillary acidic protein (GFAP), which is mutated in Alexander disease (Y242D). | 0.000271442 | 2013 | GFAP | 17 | 44913325 | A | C |
rs60825166 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911288 | G | C |
rs61060395 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915269 | A | T,C |
rs61497286 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44913318 | G | A |
rs61622935 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915225 | G | T,A |
rs61622935 | 23364391 | 2670 | GFAP | umls:C0270726 | UNIPROT | Follow-up study of 22 Chinese children with Alexander disease and analysis of parental origin of de novo GFAP mutations. | 0.52654694 | 2013 | GFAP | 17 | 44915225 | G | T,A |
rs61726468 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44913276 | C | T,G |
rs61726468 | 11138011 | 2670 | GFAP | umls:C0270726 | UNIPROT | Mutations in GFAP, encoding glial fibrillary acidic protein, are associated with Alexander disease. | 0.52654694 | 2001 | GFAP | 17 | 44913276 | C | T,G |
rs61726470 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44913291 | G | C |
rs61726471 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44910629 | T | A |
rs62635764 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44908143 | C | A |
rs62636501 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911284 | T | A |
rs748860341 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44910143 | C | G,T |
rs763868966 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911429 | C | A,T |
rs797044569 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915290 | C | T |
rs797044570 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915282 | C | T |
rs797044571 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915255 | C | T |
rs797044572 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915248 | A | G |
rs797044573 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915231 | T | C |
rs797044574 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915209 | T | G |
rs797044575 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915113 | - | GCCGCAGCT |
rs797044576 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44915106 | - | AGCCGC |
rs797044577 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44913357 | A | T |
rs797044578 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44913277 | G | A |
rs797044579 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911787 | A | G |
rs797044580 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | NA | NA | NA | NA | NA |
rs797044581 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911779 | C | G |
rs797044582 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911775 | G | T |
rs797044583 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911710 | G | C |
rs797044584 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911315 | - | CAAGTG |
rs797044585 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911312 | C | G |
rs797044586 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911290 | G | A |
rs797044587 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911289 | G | C |
rs797044588 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911278 | T | C |
rs797044589 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44911245 | T | G |
rs797044590 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44910632 | G | C,A |
rs797044591 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44908072 | C | - |
rs797044592 | NA | 2670 | GFAP | umls:C0270726 | CLINVAR | NA | 0.52654694 | NA | GFAP | 17 | 44910133 | CAGCTAAC | GAT |
GWASdb Annotation(Total Genotypes:0) | |
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(Waiting for update.) |
GWASdb Snp Trait(Total Genotypes:0) | |
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(Waiting for update.) |
Mapped by lexical matching(Total Items:13) | ||||
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HP ID | HP Name | MP ID | MP Name | Annotation |
HP:0007162 | Diffuse demyelination of the cerebral white matter | MP:0008026 | abnormal brain white matter morphology | any structural anomaly of the regions of the brain that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites |
HP:0007256 | Abnormal pyramidal signs | MP:0009940 | abnormal hippocampus pyramidal cell morphology | any structural anomaly of a multipolar projection neuron in the hippocampus pyramidal cell layer; pyramidal cells have a pyramid-shaped soma with the apex and an apical dendrite pointed toward the pial surface and other dendrites and an axon emerging from |
HP:0000218 | High palate | MP:0011615 | submucous cleft palate | a cleft of the palate with cardinal signs including a bifid uvula, a V-shaped notch at the back of the hard palate, and/or a translucent line in the midline of the soft palate and a short palate |
HP:0001274 | Agenesis of corpus callosum | MP:0013808 | abnormal tunnel of Corti morphology | any structrual anomaly of the triangular, fluid-filled space normally found between the inner and outer rows of supporting pillar cells in the organ of Corti |
HP:0000470 | Short neck | MP:0012720 | elongated neck | increased length of the neck |
HP:0001508 | Failure to thrive | MP:0013294 | prenatal lethality prior to heart atrial septation | death prior to the completion of heart atrial septation (Mus: E14.5-15.5) |
HP:0002922 | Increased CSF protein | MP:0008469 | abnormal protein level | anomaly in the amount of any of the macromolecules consisting of long chains of amino acids in peptide linkage |
HP:0000496 | Abnormality of eye movement | MP:0012287 | increased frequency of paradoxical sleep | increased incidence or duration of the sleep stage in which dreams occur and the body undergoes marked changes including rapid eye movement, loss of reflexes, and increased pulse rate and brain activity |
HP:0100716 | Self-injurious behavior | MP:0009848 | increased horizontal stereotypic behavior | increase in the frequency of repetitive rearings (greater than one per second) |
HP:0001324 | Muscle weakness | MP:0000746 | weakness | state of being infirm or less strong than normal |
HP:0001252 | Muscular hypotonia | MP:0004144 | hypotonia | decreased muscle tension resulting in limpness of the muscles in the resting state, not to be confused with weakness |
HP:0001645 | Sudden cardiac death | MP:0012557 | decreased calcium uptake by cardiac muscle | decreased directed movement of calcium ions into cardiac muscle; decreased or disrupted uptake may give rise to energetic deficit and oxidative stress. leading to cardiac disease |
HP:0002017 | Nausea and vomiting | MP:0010426 | abnormal heart and great artery attachment | any anomaly in the in the position or pattern of the connection site of the heart to any of the great arteries, including the pulmonary artery and aorta |
Mapped by homologous gene(Total Items:64) | ||||
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HP ID | HP Name | MP ID | MP Name | Annotation |
HP:0001252 | Muscular hypotonia | MP:3000003 | abnormal Ebner's gland morphology | any structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l |
HP:0002650 | Scoliosis | MP:0020309 | increased creatine kinase activity | increased ability of to catalyze the reaction: ATP + creatine = N-phosphocreatine + ADP + 2 H(+). |
HP:0007162 | Diffuse demyelination of the cerebral white matter | MP:0010875 | increased bone volume | increased amount of space occupied by bone tissue in the skeleton |
HP:0000508 | Ptosis | MP:0020321 | increased vascular endothelial cell apoptosis | increase in the timing or the number of vascular endothelial cells undergoing programmed cell death |
HP:0001250 | Seizures | MP:3000003 | abnormal Ebner's gland morphology | any structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l |
HP:0003307 | Hyperlordosis | MP:0020309 | increased creatine kinase activity | increased ability of to catalyze the reaction: ATP + creatine = N-phosphocreatine + ADP + 2 H(+). |
HP:0002015 | Dysphagia | MP:0020329 | decreased capillary density | reduction in the number of capillaries in a given cross-sectional area of a tissue |
HP:0002353 | EEG abnormality | MP:0020214 | susceptible to malignant hyperthermia | increased susceptibility to hyperthermia triggered by exposure to certain drugs used for general anesthesia, specifically the volatile anesthetic agents and the neuromuscular blocking agent, succinylcholine |
HP:0001288 | Gait disturbance | MP:0020329 | decreased capillary density | reduction in the number of capillaries in a given cross-sectional area of a tissue |
HP:0001347 | Hyperreflexia | MP:0020329 | decreased capillary density | reduction in the number of capillaries in a given cross-sectional area of a tissue |
HP:0002445 | Tetraplegia | MP:0020215 | impaired blood coagulation | impaired ability of the blood to clot |
HP:0000238 | Hydrocephalus | MP:0020080 | increased bone mineralization | increase in the rate at which minerals are deposited into bone |
HP:0002360 | Sleep disturbance | MP:0020169 | increased thyroid gland weight | higher than average weight of the thyroid gland |
HP:0000712 | Emotional lability | MP:0020220 | decreased tear production | decreased production of the amount of fluid produced in the eye |
HP:0002093 | Respiratory insufficiency | MP:0020254 | decreased collagen level | decreased level of the main structural protein of the various connective tissues in animals |
HP:0002483 | Bulbar signs | MP:0020220 | decreased tear production | decreased production of the amount of fluid produced in the eye |
HP:0001257 | Spasticity | MP:0020316 | decreased vascular endothelial cell proliferation | decrease in the expansion rate of any vascular endothelial cell population by cell division |
HP:0001508 | Failure to thrive | MP:0020234 | decreased basal metabolism | decrease in heat production of an organism at the lowest level of cell chemistry in an inactive, awake, and fasting state |
HP:0000819 | Diabetes mellitus | MP:0020137 | decreased bone mineralization | decrease in the rate at which minerals are deposited into bone |
HP:0001337 | Tremor | MP:0020329 | decreased capillary density | reduction in the number of capillaries in a given cross-sectional area of a tissue |
HP:0001618 | Dysphonia | MP:0013659 | abnormal erythroid lineage cell morphology | any structural anomaly of an immature or mature cell in the lineage leading to and including erythrocytes |
HP:0000938 | Osteopenia | MP:0020254 | decreased collagen level | decreased level of the main structural protein of the various connective tissues in animals |
HP:0002410 | Aqueductal stenosis | MP:0014185 | cerebellum atrophy | acquired diminution of the size of the cerebellum associated with wasting as from death and reabsorption of cells, diminished cellular proliferation, decreased cellular volume, pressure, ischemia, malnutrition, reduced function or malfunction, or hormonal |
HP:0001260 | Dysarthria | MP:0020329 | decreased capillary density | reduction in the number of capillaries in a given cross-sectional area of a tissue |
HP:0000821 | Hypothyroidism | MP:0020169 | increased thyroid gland weight | higher than average weight of the thyroid gland |
HP:0002017 | Nausea and vomiting | MP:0020220 | decreased tear production | decreased production of the amount of fluid produced in the eye |
HP:0002459 | Dysautonomia | MP:0020187 | altered susceptibility to prion infection | altered likelihood that an organism will develop ill effects from the small proteinaceous infectious particles which are resistant to inactivation by procedures that modify nucleic acids and which contain an abnormal isoform of a cellular protein that is |
HP:0002169 | Clonus | MP:0013401 | increased endometrial gland number | greater than normal numbers of the simple or branched tubular glands found in the mucus membrane of the uterus |
HP:0001324 | Muscle weakness | MP:0020309 | increased creatine kinase activity | increased ability of to catalyze the reaction: ATP + creatine = N-phosphocreatine + ADP + 2 H(+). |
HP:0000651 | Diplopia | MP:0020187 | altered susceptibility to prion infection | altered likelihood that an organism will develop ill effects from the small proteinaceous infectious particles which are resistant to inactivation by procedures that modify nucleic acids and which contain an abnormal isoform of a cellular protein that is |
HP:0100716 | Self-injurious behavior | MP:0020157 | abnormal behavioral response to alcohol | any anomaly in the behavioral response induced by alcohol, such as induced hyperactivity or stereotypic behavior |
HP:0000975 | Hyperhidrosis | MP:0020187 | altered susceptibility to prion infection | altered likelihood that an organism will develop ill effects from the small proteinaceous infectious particles which are resistant to inactivation by procedures that modify nucleic acids and which contain an abnormal isoform of a cellular protein that is |
HP:0007256 | Abnormal pyramidal signs | MP:0020137 | decreased bone mineralization | decrease in the rate at which minerals are deposited into bone |
HP:0002383 | Encephalitis | MP:0020215 | impaired blood coagulation | impaired ability of the blood to clot |
HP:0000826 | Precocious puberty | MP:0020137 | decreased bone mineralization | decrease in the rate at which minerals are deposited into bone |
HP:0000470 | Short neck | MP:0020137 | decreased bone mineralization | decrease in the rate at which minerals are deposited into bone |
HP:0001249 | Intellectual disability | MP:0020316 | decreased vascular endothelial cell proliferation | decrease in the expansion rate of any vascular endothelial cell population by cell division |
HP:0002045 | Hypothermia | MP:0020137 | decreased bone mineralization | decrease in the rate at which minerals are deposited into bone |
HP:0002376 | Developmental regression | MP:0020214 | susceptible to malignant hyperthermia | increased susceptibility to hyperthermia triggered by exposure to certain drugs used for general anesthesia, specifically the volatile anesthetic agents and the neuromuscular blocking agent, succinylcholine |
HP:0001645 | Sudden cardiac death | MP:0020329 | decreased capillary density | reduction in the number of capillaries in a given cross-sectional area of a tissue |
HP:0001251 | Ataxia | MP:0020301 | short tongue | decreased length of the mobile mass of muscular tissue and surrounding epithelial tissue occupying the cavity of the mouth and forming part of the floor |
HP:0000218 | High palate | MP:0020321 | increased vascular endothelial cell apoptosis | increase in the timing or the number of vascular endothelial cells undergoing programmed cell death |
HP:0000639 | Nystagmus | MP:3000003 | abnormal Ebner's gland morphology | any structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l |
HP:0002607 | Bowel incontinence | MP:0013438 | dysmyelination | reduced amount of myelin present in the form of a myelin sheath surrounding an axon due to defects in the synthesis and formation of myelin |
HP:0002514 | Cerebral calcification | MP:0020329 | decreased capillary density | reduction in the number of capillaries in a given cross-sectional area of a tissue |
HP:0002922 | Increased CSF protein | MP:0020215 | impaired blood coagulation | impaired ability of the blood to clot |
HP:0001355 | Megalencephaly | MP:0020039 | increased bone ossification | increase in the formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance |
HP:0002167 | Neurological speech impairment | MP:0020329 | decreased capillary density | reduction in the number of capillaries in a given cross-sectional area of a tissue |
HP:0100729 | Large face | MP:0020137 | decreased bone mineralization | decrease in the rate at which minerals are deposited into bone |
HP:0001274 | Agenesis of corpus callosum | MP:3000003 | abnormal Ebner's gland morphology | any structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l |
HP:0000496 | Abnormality of eye movement | MP:0020214 | susceptible to malignant hyperthermia | increased susceptibility to hyperthermia triggered by exposure to certain drugs used for general anesthesia, specifically the volatile anesthetic agents and the neuromuscular blocking agent, succinylcholine |
HP:0010628 | Facial palsy | MP:0020240 | increased skeletal muscle cell apoptosis | increase in the number of skeletal muscle cells undergoing programmed cell death |
HP:0002072 | Chorea | MP:0020329 | decreased capillary density | reduction in the number of capillaries in a given cross-sectional area of a tissue |
HP:0002615 | Hypotension | MP:0020214 | susceptible to malignant hyperthermia | increased susceptibility to hyperthermia triggered by exposure to certain drugs used for general anesthesia, specifically the volatile anesthetic agents and the neuromuscular blocking agent, succinylcholine |
HP:0000256 | Macrocephaly | MP:0020309 | increased creatine kinase activity | increased ability of to catalyze the reaction: ATP + creatine = N-phosphocreatine + ADP + 2 H(+). |
HP:0000716 | Depression | MP:0020329 | decreased capillary density | reduction in the number of capillaries in a given cross-sectional area of a tissue |
HP:0002019 | Constipation | MP:0020234 | decreased basal metabolism | decrease in heat production of an organism at the lowest level of cell chemistry in an inactive, awake, and fasting state |
HP:0002808 | Kyphosis | MP:0020254 | decreased collagen level | decreased level of the main structural protein of the various connective tissues in animals |
HP:0002357 | Dysphasia | MP:0020329 | decreased capillary density | reduction in the number of capillaries in a given cross-sectional area of a tissue |
HP:0004481 | Progressive macrocephaly | MP:0014171 | increased fatty acid oxidation | increased rate or incidence of the process of removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydr |
HP:0002007 | Frontal bossing | MP:3000003 | abnormal Ebner's gland morphology | any structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l |
HP:0010535 | Sleep apnea | MP:0020220 | decreased tear production | decreased production of the amount of fluid produced in the eye |
HP:0000822 | Hypertension | MP:0020216 | decreased circulating complement protein level | less than normal levels of the serum proteins that act sequentially to allow for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes |
HP:0100247 | Recurrent singultus | MP:0011380 | enlarged brain ventricles | increased size of one or more of the four communicating cavities within the brain that are continuous with the central canal of the spinal cord |
Disease ID | 218 |
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Disease | alexander disease |
Case | (Waiting for update.) |