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Pediatric Disease Annotations & Medicines



   pulmonary emphysema
  

Disease ID 845
Disease pulmonary emphysema
Definition
Enlargement of air spaces distal to the TERMINAL BRONCHIOLES where gas-exchange normally takes place. This is usually due to destruction of the alveolar wall. Pulmonary emphysema can be classified by the location and distribution of the lesions.
Synonym
emphysema (disorder)
emphysema of lung
emphysema of lung, nos
emphysema pulm
emphysema pulmonary
emphysema, pulmonary
emphysema/copd
emphysemas pulm
emphysemas, pulmonary
lung emphysema
pulm emphysema
pulm emphysemas
pulmonary emphysema (disorder)
pulmonary emphysema [disease/finding]
pulmonary emphysema, nos
pulmonary emphysemas
DOID
UMLS
C0034067
MeSH
SNOMED-CT
Comorbidity
UMLS | Disease | Sentences' Count(Total Sentences:25)
C0034069  |  pulmonary fibrosis  |  5
C1800706  |  idiopathic pulmonary fibrosis  |  3
C0032326  |  pneumothorax  |  3
C0024117  |  chronic obstructive pulmonary disease  |  2
C0010495  |  cutis laxa  |  2
C0032285  |  pulmonary inflammation  |  2
C0032285  |  pneumonia  |  2
C1145670  |  respiratory failure  |  1
C0020538  |  hypertension  |  1
C0152021  |  congenital heart disease  |  1
C0024115  |  pulmonary disease  |  1
C0006277  |  bronchitis  |  1
C0006267  |  bronchiectasis  |  1
C0020542  |  pulmonary hypertension  |  1
C0242379  |  lung cancers  |  1
C0221757  |  aat deficiency  |  1
C0041296  |  tuberculosis  |  1
C0032273  |  pneumoconiosis  |  1
C0018799  |  heart disease  |  1
C0085261  |  proteus syndrome  |  1
C0010674  |  cystic fibrosis  |  1
C0878544  |  cardiomyopathy  |  1
C0007193  |  dilated cardiomyopathy  |  1
C0242379  |  lung cancer  |  1
C0600260  |  obstructive pulmonary disease  |  1
Curated Gene
Entrez_id | Symbol | Resource(Total Genes:7)
TGFB1  |  7040  |  CTD_human
EPHX1  |  2052  |  CTD_human
HMOX1  |  3162  |  CTD_human
CYP2A6  |  1548  |  CTD_human
SERPINA1  |  5265  |  CTD_human
ITGB6  |  3694  |  CTD_human
MMP12  |  4321  |  CTD_human
Inferring Gene
Entrez_id | Symbol | Resource(Total Genes:3)
5265  |  SERPINA1  |  infer
12  |  SERPINA3  |  infer
5270  |  SERPINE2  |  infer
Text Mined Gene
Entrez_id | Symbol | Score | Resource(Total Genes:138)
497258  |  BDNF-AS  |  DISEASES
928  |  CD9  |  DISEASES
1634  |  DCN  |  DISEASES
50508  |  NOX3  |  DISEASES
9817  |  KEAP1  |  DISEASES
8646  |  CHRD  |  DISEASES
990  |  CDC6  |  DISEASES
3162  |  HMOX1  |  DISEASES
64781  |  CERK  |  DISEASES
1511  |  CTSG  |  DISEASES
51382  |  ATP6V1D  |  DISEASES
7076  |  TIMP1  |  DISEASES
4313  |  MMP2  |  DISEASES
23594  |  ORC6  |  DISEASES
10423  |  CDIPT  |  DISEASES
26258  |  BLOC1S6  |  DISEASES
4849  |  CNOT3  |  DISEASES
6348  |  CCL3  |  DISEASES
6347  |  CCL2  |  DISEASES
9450  |  LY86  |  DISEASES
4015  |  LOX  |  DISEASES
566  |  AZU1  |  DISEASES
5657  |  PRTN3  |  DISEASES
4317  |  MMP8  |  DISEASES
8074  |  FGF23  |  DISEASES
5273  |  SERPINB10  |  DISEASES
8655  |  DYNLL1  |  DISEASES
11034  |  DSTN  |  DISEASES
5326  |  PLAGL2  |  DISEASES
2006  |  ELN  |  DISEASES
83667  |  SESN2  |  DISEASES
9104  |  RGN  |  DISEASES
3569  |  IL6  |  DISEASES
3658  |  IREB2  |  DISEASES
9394  |  HS6ST1  |  DISEASES
4316  |  MMP7  |  DISEASES
4087  |  SMAD2  |  DISEASES
7077  |  TIMP2  |  DISEASES
3553  |  IL1B  |  DISEASES
1991  |  ELANE  |  DISEASES
975  |  CD81  |  DISEASES
5000  |  ORC4  |  DISEASES
2247  |  FGF2  |  DISEASES
56302  |  TRPV5  |  DISEASES
644  |  BLVRA  |  DISEASES
6636  |  SNRPF  |  DISEASES
2252  |  FGF7  |  DISEASES
11057  |  ABHD2  |  DISEASES
81631  |  MAP1LC3B  |  DISEASES
3930  |  LBR  |  DISEASES
2052  |  EPHX1  |  DISEASES
7356  |  SCGB1A1  |  DISEASES
636  |  BICD1  |  DISEASES
2321  |  FLT1  |  DISEASES
3694  |  ITGB6  |  DISEASES
23643  |  LY96  |  DISEASES
1234  |  CCR5  |  DISEASES
1990  |  CELA1  |  DISEASES
213  |  ALB  |  DISEASES
6374  |  CXCL5  |  DISEASES
64399  |  HHIP  |  DISEASES
4846  |  NOS3  |  DISEASES
115825  |  WDFY2  |  DISEASES
81620  |  CDT1  |  DISEASES
1548  |  CYP2A6  |  DISEASES
1632  |  ECI1  |  DISEASES
51435  |  SCARA3  |  DISEASES
54541  |  DDIT4  |  DISEASES
1444  |  CSHL1  |  DISEASES
30008  |  EFEMP2  |  DISEASES
836  |  CASP3  |  DISEASES
8425  |  LTBP4  |  DISEASES
6440  |  SFTPC  |  DISEASES
6569  |  SLC34A1  |  DISEASES
3039  |  HBA1  |  DISEASES
4312  |  MMP1  |  DISEASES
2  |  A2M  |  DISEASES
4642  |  MYO1D  |  DISEASES
2200  |  FBN1  |  DISEASES
9622  |  KLK4  |  DISEASES
4094  |  MAF  |  DISEASES
23545  |  ATP6V0A2  |  DISEASES
5104  |  SERPINA5  |  DISEASES
1665  |  DHX15  |  DISEASES
9369  |  NRXN3  |  DISEASES
6590  |  SLPI  |  DISEASES
3605  |  IL17A  |  DISEASES
10516  |  FBLN5  |  DISEASES
5265  |  SERPINA1  |  DISEASES
55124  |  PIWIL2  |  DISEASES
50485  |  SMARCAL1  |  DISEASES
1510  |  CTSE  |  DISEASES
6525  |  SMTN  |  DISEASES
6364  |  CCL20  |  DISEASES
81031  |  SLC2A10  |  DISEASES
11169  |  WDHD1  |  DISEASES
415116  |  PIM3  |  DISEASES
25937  |  WWTR1  |  DISEASES
2530  |  FUT8  |  DISEASES
9374  |  PPT2  |  DISEASES
1382  |  CRABP2  |  DISEASES
4582  |  MUC1  |  DISEASES
1520  |  CTSS  |  DISEASES
1791  |  DNTT  |  DISEASES
7422  |  VEGFA  |  DISEASES
6441  |  SFTPD  |  DISEASES
4318  |  MMP9  |  DISEASES
9469  |  CHST3  |  DISEASES
9935  |  MAFB  |  DISEASES
7633  |  ZNF79  |  DISEASES
5292  |  PIM1  |  DISEASES
7099  |  TLR4  |  DISEASES
57134  |  MAN1C1  |  DISEASES
23013  |  SPEN  |  DISEASES
51032  |  CELA2B  |  DISEASES
9365  |  KL  |  DISEASES
1992  |  SERPINB1  |  DISEASES
114609  |  TIRAP  |  DISEASES
12  |  SERPINA3  |  DISEASES
9255  |  AIMP1  |  DISEASES
2919  |  CXCL1  |  DISEASES
4052  |  LTBP1  |  DISEASES
154810  |  AMOTL1  |  DISEASES
146664  |  MGAT5B  |  DISEASES
23705  |  CADM1  |  DISEASES
4125  |  MAN2B1  |  DISEASES
7124  |  TNF  |  DISEASES
54900  |  LAX1  |  DISEASES
5270  |  SERPINE2  |  DISEASES
5515  |  PPP2CA  |  DISEASES
10189  |  ALYREF  |  DISEASES
2920  |  CXCL2  |  DISEASES
90161  |  HS6ST2  |  DISEASES
727897  |  MUC5B  |  DISEASES
5228  |  PGF  |  DISEASES
1506  |  CTRL  |  DISEASES
104564225  |  MHRT  |  DISEASES
4555  |  MT-TD  |  DISEASES
Locus(Waiting for update.)
Disease ID 845
Disease pulmonary emphysema
Integrated Phenotype(Waiting for update.)
Text Mined Phenotype
HPO | Name | Sentences' Count(Total Phenotypes:17)
Disease ID 845
Disease pulmonary emphysema
Manually Symptom(Waiting for update.)
Text Mined Symptom
UMLS | Name | Sentences' Count(Total Symptoms:6)
C0149781  |  spontaneous pneumothorax  |  1
C0275891  |  tuberculous pneumonia  |  1
C0006277  |  bronchitis  |  1
C0020542  |  pulmonary hypertension  |  1
C0340231  |  tracheobronchomalacia  |  1
C0242379  |  lung cancer  |  1
Manually Genotype(Total Text Mining Genotypes:0)
(Waiting for update.)
All Snps(Total Genotypes:17)
snpId pubmedId geneId geneSymbol diseaseId sourceId sentence score Year geneSymbol_dbSNP CHROMOSOME POS REF ALT
rs10947233243834746636SNRPFumls:C0034067BeFreeAmong 7,914 participants, we identified regions at genome-wide significance for percent emphysema in or near SNRPF (rs7957346; P = 2.2 × 10(-8)) and PPT2 (rs10947233; P = 3.2 × 10(-8)), both of which replicated in an additional 6,023 individuals of European ancestry.0.0002714422014PPT2;PPT2-EGFL8632156647GC,T
rs10947233243834749374PPT2umls:C0034067BeFreeAmong 7,914 participants, we identified regions at genome-wide significance for percent emphysema in or near SNRPF (rs7957346; P = 2.2 × 10(-8)) and PPT2 (rs10947233; P = 3.2 × 10(-8)), both of which replicated in an additional 6,023 individuals of European ancestry.0.0002714422014PPT2;PPT2-EGFL8632156647GC,T
rs11046966213304576660SOX5umls:C0034067BeFreeThe most significant SNP in the BEOCOPD replication was rs11046966 (National Emphysema Treatment Trial-Normative Aging Study P = 6.0 × 10(-4), BEOCOPD P = 1.5 × 10(-5), combined P = 1.7 × 10(-7)), located 3' to the gene SOX5.0.0002714422011NA1223524758TC
rs121304952438347457134MAN1C1umls:C0034067BeFreeAmong African Americans, a locus near a third α-mannosidase-related gene, MAN1C1 (rs12130495; P = 9.9 × 10(-6); MAF, 13.3%) was associated with percent emphysema.0.0002714422014MAN1C1125758907GT
rs12130495243834744094MAFumls:C0034067BeFreeAmong African Americans, a locus near a third α-mannosidase-related gene, MAN1C1 (rs12130495; P = 9.9 × 10(-6); MAF, 13.3%) was associated with percent emphysema.0.0002714422014MAN1C1125758907GT
rs16197625154699636BICD1umls:C0034067BeFreeThe emphysema-predominant GOLD 1 cluster was nominally associated with rs7671167 (FAM13A) and rs161976 (BICD1).0.0031813582014BICD11232215232AG
rs1619762515469910144FAM13Aumls:C0034067BeFreeThe emphysema-predominant GOLD 1 cluster was nominally associated with rs7671167 (FAM13A) and rs161976 (BICD1).0.0002714422014BICD11232215232AG
rs1800470202334207040TGFB1umls:C0034067BeFreeOf the genotypes examined, membership in cluster 1 (emphysema-predominant) was associated with TGFB1 SNP rs1800470.0.1234527992010TGFB11941353016GC,A
rs19800572456319464399HHIPumls:C0034067BeFreeWe found strong genetic associations between the mild upper zone emphysema group and rs1980057 near HHIP, and between the severe emphysema group and rs8034191 in the chromosome 15q region (p<0.001).0.0002714422014NA4144564586CT
rs2277698237347487077TIMP2umls:C0034067BeFreeThe TIMP2 rs2277698 SNP was associated with overall (p = 0.022) and paraseptal (p = 0.010) emphysema, as well as with FEV₁/FVC ratio (p = 0.035) and MEF50 (p = 0.008).0.0005428842013TIMP21778870935CT
rs35949016220118142530FUT8umls:C0034067BeFreeAssociation of fucosyltransferase 8 (FUT8) polymorphism Thr267Lys with pulmonary emphysema.0.0013572092011FUT81465669445CA
rs734556255171315270SERPINE2umls:C0034067BeFreeSNP rs734556 was associated with decreased lung tissue expression of SERPINE2, a susceptibility gene for emphysema.0.0031813582015NA2223696612CT
rs76711672515469910144FAM13Aumls:C0034067BeFreeThe emphysema-predominant GOLD 1 cluster was nominally associated with rs7671167 (FAM13A) and rs161976 (BICD1).0.0002714422014FAM13A488962828CT
rs767116725154699636BICD1umls:C0034067BeFreeThe emphysema-predominant GOLD 1 cluster was nominally associated with rs7671167 (FAM13A) and rs161976 (BICD1).0.0031813582014FAM13A488962828CT
rs7957346243834746636SNRPFumls:C0034067BeFreeAmong 7,914 participants, we identified regions at genome-wide significance for percent emphysema in or near SNRPF (rs7957346; P = 2.2 × 10(-8)) and PPT2 (rs10947233; P = 3.2 × 10(-8)), both of which replicated in an additional 6,023 individuals of European ancestry.0.0002714422014SNRPF;CCDC381295866696CA
rs7957346243834749374PPT2umls:C0034067BeFreeAmong 7,914 participants, we identified regions at genome-wide significance for percent emphysema in or near SNRPF (rs7957346; P = 2.2 × 10(-8)) and PPT2 (rs10947233; P = 3.2 × 10(-8)), both of which replicated in an additional 6,023 individuals of European ancestry.0.0002714422014SNRPF;CCDC381295866696CA
rs80341912456319464399HHIPumls:C0034067BeFreeWe found strong genetic associations between the mild upper zone emphysema group and rs1980057 near HHIP, and between the severe emphysema group and rs8034191 in the chromosome 15q region (p<0.001).0.0002714422014HYKK1578513681TC
GWASdb Annotation(Total Genotypes:0)
(Waiting for update.)
GWASdb Snp Trait(Total Genotypes:19)
CHR POS SNPID REF ALT ORI_SNPID PMID P_VALUE P_VALUE_TEXT OR/BETA CI95_TEXT GWAS_INITIAL_SAMPLE_SIZE SUB_POPULATION SUPER_POPULATION GWAS_TRAIT HPO_ID HPO_TERM DO_ID DO_TERM MESH_ID MESH_TERM EFO_ID EFO_TERM DOLITE_TERM RISK_ALLELE PUBLICATION_TYPE AA GENE_SYMBOL TYPE REFGENE
530661573rs9292394GTrs9292394207098202.00E-06quantitative1.83[NA] HU increaseUp to 2,380 Caucasian individuals (including 1,455 Caucasian cases)Caucasian(2380)ALL(2380)EUR(2380)ALL(2380)Emphysema-related traitsHPOID:0002097EmphysemaDOID:9675pulmonary emphysemaD004646EmphysemaNANAEmphysemars9292394-TClinical TrialResearch Support, N.I.H., ExtramuralResearch Support, Non-U.S. Gov't
5144070311rs10065677CTrs10065677207098207.60E-06NANANAUp to 2,380 Caucasian individuals (including 1,455 Caucasian cases)Caucasian(2380)ALL(2380)EUR(2380)ALL(2380)Emphysema-related traitsHPOID:0002097EmphysemaDOID:9675pulmonary emphysemaD004646EmphysemaNANAEmphysemaNAClinical TrialResearch Support, N.I.H., ExtramuralResearch Support, Non-U.S. Gov't
752472450rs1012036CTrs1012036207098205.00E-06qualitative1.47NAUp to 2,380 Caucasian individuals (including 1,455 Caucasian cases)Caucasian(2380)ALL(2380)EUR(2380)ALL(2380)Emphysema-related traitsHPOID:0002097EmphysemaDOID:9675pulmonary emphysemaD004646EmphysemaNANAEmphysemars1012036-CClinical TrialResearch Support, N.I.H., ExtramuralResearch Support, Non-U.S. Gov't
82734202rs341672TCrs341672207098208.50E-06NANANAUp to 2,380 Caucasian individuals (including 1,455 Caucasian cases)Caucasian(2380)ALL(2380)EUR(2380)ALL(2380)Emphysema-related traitsHPOID:0002097EmphysemaDOID:9675pulmonary emphysemaD004646EmphysemaNANAEmphysemaNAClinical TrialResearch Support, N.I.H., ExtramuralResearch Support, Non-U.S. Gov't
82740502rs641525TGrs641525207098205.00E-07qualitative2.19NAUp to 2,380 Caucasian individuals (including 1,455 Caucasian cases)Caucasian(2380)ALL(2380)EUR(2380)ALL(2380)Emphysema-related traitsHPOID:0002097EmphysemaDOID:9675pulmonary emphysemaD004646EmphysemaNANAEmphysemars641525-TClinical TrialResearch Support, N.I.H., ExtramuralResearch Support, Non-U.S. Gov't
101630821rs2999399CTrs2999399207098206.00E-06qualitative1.47NAUp to 2,380 Caucasian individuals (including 1,455 Caucasian cases)Caucasian(2380)ALL(2380)EUR(2380)ALL(2380)Emphysema-related traitsHPOID:0002097EmphysemaDOID:9675pulmonary emphysemaD004646EmphysemaNANAEmphysemars2999399-TClinical TrialResearch Support, N.I.H., ExtramuralResearch Support, Non-U.S. Gov't
1034231275rs7905537ACrs7905537207098208.00E-07quantitative1.85[NA] HU increaseUp to 2,380 Caucasian individuals (including 1,455 Caucasian cases)Caucasian(2380)ALL(2380)EUR(2380)ALL(2380)Emphysema-related traitsHPOID:0002097EmphysemaDOID:9675pulmonary emphysemaD004646EmphysemaNANAEmphysemars7905537-AClinical TrialResearch Support, N.I.H., ExtramuralResearch Support, Non-U.S. Gov't
1045307205rs10900114TCrs10900114207098208.40E-06NANANAUp to 2,380 Caucasian individuals (including 1,455 Caucasian cases)Caucasian(2380)ALL(2380)EUR(2380)ALL(2380)Emphysema-related traitsHPOID:0002097EmphysemaDOID:9675pulmonary emphysemaD004646EmphysemaNANAEmphysemaNAClinical TrialResearch Support, N.I.H., ExtramuralResearch Support, Non-U.S. Gov't
1045319654rs7911712GArs7911712207098206.00E-06quantitative2.05[NA] HU increaseUp to 2,380 Caucasian individuals (including 1,455 Caucasian cases)Caucasian(2380)ALL(2380)EUR(2380)ALL(2380)Emphysema-related traitsHPOID:0002097EmphysemaDOID:9675pulmonary emphysemaD004646EmphysemaNANAEmphysemars7911712-AClinical TrialResearch Support, N.I.H., ExtramuralResearch Support, Non-U.S. Gov't
1054410202rs1348350CArs1348350207098203.10E-06NANANAUp to 2,380 Caucasian individuals (including 1,455 Caucasian cases)Caucasian(2380)ALL(2380)EUR(2380)ALL(2380)Emphysema-related traitsHPOID:0002097EmphysemaDOID:9675pulmonary emphysemaD004646EmphysemaNANAEmphysemaNAClinical TrialResearch Support, N.I.H., ExtramuralResearch Support, Non-U.S. Gov't
1180110511rs2448276CTrs2448276207098205.20E-06NANANAUp to 2,380 Caucasian individuals (including 1,455 Caucasian cases)Caucasian(2380)ALL(2380)EUR(2380)ALL(2380)Emphysema-related traitsHPOID:0002097EmphysemaDOID:9675pulmonary emphysemaD004646EmphysemaNANAEmphysemaNAClinical TrialResearch Support, N.I.H., ExtramuralResearch Support, Non-U.S. Gov't
1232380501rs10844154ACrs10844154207098206.00E-07qualitative1.46NAUp to 2,380 Caucasian individuals (including 1,455 Caucasian cases)Caucasian(2380)ALL(2380)EUR(2380)ALL(2380)Emphysema-related traitsHPOID:0002097EmphysemaDOID:9675pulmonary emphysemaD004646EmphysemaNANAEmphysemars10844154-CClinical TrialResearch Support, N.I.H., ExtramuralResearch Support, Non-U.S. Gov't
1232394104rs326633CTrs326633207098201.10E-06NANANAUp to 2,380 Caucasian individuals (including 1,455 Caucasian cases)Caucasian(2380)ALL(2380)EUR(2380)ALL(2380)Emphysema-related traitsHPOID:0002097EmphysemaDOID:9675pulmonary emphysemaD004646EmphysemaNANAEmphysemaNAClinical TrialResearch Support, N.I.H., ExtramuralResearch Support, Non-U.S. Gov't
1232418251rs161981TCrs161981207098206.10E-07NANANAUp to 2,380 Caucasian individuals (including 1,455 Caucasian cases)Caucasian(2380)ALL(2380)EUR(2380)ALL(2380)Emphysema-related traitsHPOID:0002097EmphysemaDOID:9675pulmonary emphysemaD004646EmphysemaNANAEmphysemaNAClinical TrialResearch Support, N.I.H., ExtramuralResearch Support, Non-U.S. Gov't
1232422835rs261869AGrs261869207098208.10E-06NANANAUp to 2,380 Caucasian individuals (including 1,455 Caucasian cases)Caucasian(2380)ALL(2380)EUR(2380)ALL(2380)Emphysema-related traitsHPOID:0002097EmphysemaDOID:9675pulmonary emphysemaD004646EmphysemaNANAEmphysemaNAClinical TrialResearch Support, N.I.H., ExtramuralResearch Support, Non-U.S. Gov't
1232426389rs2129590AGrs2129590207098204.80E-06NANANAUp to 2,380 Caucasian individuals (including 1,455 Caucasian cases)Caucasian(2380)ALL(2380)EUR(2380)ALL(2380)Emphysema-related traitsHPOID:0002097EmphysemaDOID:9675pulmonary emphysemaD004646EmphysemaNANAEmphysemaNAClinical TrialResearch Support, N.I.H., ExtramuralResearch Support, Non-U.S. Gov't
12126661071rs7977375CTrs7977375207098204.00E-06NANANAUp to 2,380 Caucasian individuals (including 1,455 Caucasian cases)Caucasian(2380)ALL(2380)EUR(2380)ALL(2380)Emphysema-related traitsHPOID:0002097EmphysemaDOID:9675pulmonary emphysemaD004646EmphysemaNANAEmphysemaNAClinical TrialResearch Support, N.I.H., ExtramuralResearch Support, Non-U.S. Gov't
1494795492rs4905179AGrs4905179207098209.80E-06NANANAUp to 2,380 Caucasian individuals (including 1,455 Caucasian cases)Caucasian(2380)ALL(2380)EUR(2380)ALL(2380)Emphysema-related traitsHPOID:0002097EmphysemaDOID:9675pulmonary emphysemaD004646EmphysemaNANAEmphysemaNAClinical TrialResearch Support, N.I.H., ExtramuralResearch Support, Non-U.S. Gov't
14104807712rs8016091GArs8016091207098204.10E-06NANANAUp to 2,380 Caucasian individuals (including 1,455 Caucasian cases)Caucasian(2380)ALL(2380)EUR(2380)ALL(2380)Emphysema-related traitsHPOID:0002097EmphysemaDOID:9675pulmonary emphysemaD004646EmphysemaNANAEmphysemaNAClinical TrialResearch Support, N.I.H., ExtramuralResearch Support, Non-U.S. Gov't
Mapped by lexical matching(Total Items:0)
(Waiting for update.)
Mapped by homologous gene(Total Items:0)
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Chemical(Total Drugs:0)
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FDA approved drug and dosage information(Total Drugs:0)
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FDA labeling changes(Total Drugs:0)
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