pulmonary emphysema |
Disease ID | 845 |
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Disease | pulmonary emphysema |
Integrated Phenotype | (Waiting for update.) |
Text Mined Phenotype | HPO | Name | Sentences' Count(Total Phenotypes:17) HP:0002206 | Pulmonary fibrosis | 5 HP:0002107 | Collapsed lung | 3 HP:0000973 | Dermatomegaly | 2 HP:0002090 | Pneumonia | 2 HP:0006510 | Chronic obstructive pulmonary disease | 2 HP:0100750 | Pulmonary atelectasis | 1 HP:0000822 | Hypertension | 1 HP:0002092 | Pulmonary artery hypertension | 1 HP:0001640 | Increased heart size | 1 HP:0002786 | Tracheobronchomalacia | 1 HP:0001638 | Cardiomyopathy | 1 HP:0002108 | Spontaneous pneumothorax | 1 HP:0002110 | Bronchiectasis | 1 HP:0002878 | Respiratory failure | 1 HP:0004469 | Chronic bronchitis | 1 HP:0001644 | Congestive cardiomyopathy | 1 HP:0012387 | Bronchitis | 1 |
Disease ID | 845 |
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Disease | pulmonary emphysema |
Manually Symptom | (Waiting for update.) |
Text Mined Symptom | UMLS | Name | Sentences' Count(Total Symptoms:6) C0149781 | spontaneous pneumothorax | 1 C0275891 | tuberculous pneumonia | 1 C0006277 | bronchitis | 1 C0020542 | pulmonary hypertension | 1 C0340231 | tracheobronchomalacia | 1 C0242379 | lung cancer | 1 |
Manually Genotype(Total Text Mining Genotypes:0) |
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(Waiting for update.) |
All Snps(Total Genotypes:17) | |||||||||||||
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snpId | pubmedId | geneId | geneSymbol | diseaseId | sourceId | sentence | score | Year | geneSymbol_dbSNP | CHROMOSOME | POS | REF | ALT |
rs10947233 | 24383474 | 6636 | SNRPF | umls:C0034067 | BeFree | Among 7,914 participants, we identified regions at genome-wide significance for percent emphysema in or near SNRPF (rs7957346; P = 2.2 × 10(-8)) and PPT2 (rs10947233; P = 3.2 × 10(-8)), both of which replicated in an additional 6,023 individuals of European ancestry. | 0.000271442 | 2014 | PPT2;PPT2-EGFL8 | 6 | 32156647 | G | C,T |
rs10947233 | 24383474 | 9374 | PPT2 | umls:C0034067 | BeFree | Among 7,914 participants, we identified regions at genome-wide significance for percent emphysema in or near SNRPF (rs7957346; P = 2.2 × 10(-8)) and PPT2 (rs10947233; P = 3.2 × 10(-8)), both of which replicated in an additional 6,023 individuals of European ancestry. | 0.000271442 | 2014 | PPT2;PPT2-EGFL8 | 6 | 32156647 | G | C,T |
rs11046966 | 21330457 | 6660 | SOX5 | umls:C0034067 | BeFree | The most significant SNP in the BEOCOPD replication was rs11046966 (National Emphysema Treatment Trial-Normative Aging Study P = 6.0 × 10(-4), BEOCOPD P = 1.5 × 10(-5), combined P = 1.7 × 10(-7)), located 3' to the gene SOX5. | 0.000271442 | 2011 | NA | 12 | 23524758 | T | C |
rs12130495 | 24383474 | 57134 | MAN1C1 | umls:C0034067 | BeFree | Among African Americans, a locus near a third α-mannosidase-related gene, MAN1C1 (rs12130495; P = 9.9 × 10(-6); MAF, 13.3%) was associated with percent emphysema. | 0.000271442 | 2014 | MAN1C1 | 1 | 25758907 | G | T |
rs12130495 | 24383474 | 4094 | MAF | umls:C0034067 | BeFree | Among African Americans, a locus near a third α-mannosidase-related gene, MAN1C1 (rs12130495; P = 9.9 × 10(-6); MAF, 13.3%) was associated with percent emphysema. | 0.000271442 | 2014 | MAN1C1 | 1 | 25758907 | G | T |
rs161976 | 25154699 | 636 | BICD1 | umls:C0034067 | BeFree | The emphysema-predominant GOLD 1 cluster was nominally associated with rs7671167 (FAM13A) and rs161976 (BICD1). | 0.003181358 | 2014 | BICD1 | 12 | 32215232 | A | G |
rs161976 | 25154699 | 10144 | FAM13A | umls:C0034067 | BeFree | The emphysema-predominant GOLD 1 cluster was nominally associated with rs7671167 (FAM13A) and rs161976 (BICD1). | 0.000271442 | 2014 | BICD1 | 12 | 32215232 | A | G |
rs1800470 | 20233420 | 7040 | TGFB1 | umls:C0034067 | BeFree | Of the genotypes examined, membership in cluster 1 (emphysema-predominant) was associated with TGFB1 SNP rs1800470. | 0.123452799 | 2010 | TGFB1 | 19 | 41353016 | G | C,A |
rs1980057 | 24563194 | 64399 | HHIP | umls:C0034067 | BeFree | We found strong genetic associations between the mild upper zone emphysema group and rs1980057 near HHIP, and between the severe emphysema group and rs8034191 in the chromosome 15q region (p<0.001). | 0.000271442 | 2014 | NA | 4 | 144564586 | C | T |
rs2277698 | 23734748 | 7077 | TIMP2 | umls:C0034067 | BeFree | The TIMP2 rs2277698 SNP was associated with overall (p = 0.022) and paraseptal (p = 0.010) emphysema, as well as with FEV₁/FVC ratio (p = 0.035) and MEF50 (p = 0.008). | 0.000542884 | 2013 | TIMP2 | 17 | 78870935 | C | T |
rs35949016 | 22011814 | 2530 | FUT8 | umls:C0034067 | BeFree | Association of fucosyltransferase 8 (FUT8) polymorphism Thr267Lys with pulmonary emphysema. | 0.001357209 | 2011 | FUT8 | 14 | 65669445 | C | A |
rs734556 | 25517131 | 5270 | SERPINE2 | umls:C0034067 | BeFree | SNP rs734556 was associated with decreased lung tissue expression of SERPINE2, a susceptibility gene for emphysema. | 0.003181358 | 2015 | NA | 2 | 223696612 | C | T |
rs7671167 | 25154699 | 10144 | FAM13A | umls:C0034067 | BeFree | The emphysema-predominant GOLD 1 cluster was nominally associated with rs7671167 (FAM13A) and rs161976 (BICD1). | 0.000271442 | 2014 | FAM13A | 4 | 88962828 | C | T |
rs7671167 | 25154699 | 636 | BICD1 | umls:C0034067 | BeFree | The emphysema-predominant GOLD 1 cluster was nominally associated with rs7671167 (FAM13A) and rs161976 (BICD1). | 0.003181358 | 2014 | FAM13A | 4 | 88962828 | C | T |
rs7957346 | 24383474 | 6636 | SNRPF | umls:C0034067 | BeFree | Among 7,914 participants, we identified regions at genome-wide significance for percent emphysema in or near SNRPF (rs7957346; P = 2.2 × 10(-8)) and PPT2 (rs10947233; P = 3.2 × 10(-8)), both of which replicated in an additional 6,023 individuals of European ancestry. | 0.000271442 | 2014 | SNRPF;CCDC38 | 12 | 95866696 | C | A |
rs7957346 | 24383474 | 9374 | PPT2 | umls:C0034067 | BeFree | Among 7,914 participants, we identified regions at genome-wide significance for percent emphysema in or near SNRPF (rs7957346; P = 2.2 × 10(-8)) and PPT2 (rs10947233; P = 3.2 × 10(-8)), both of which replicated in an additional 6,023 individuals of European ancestry. | 0.000271442 | 2014 | SNRPF;CCDC38 | 12 | 95866696 | C | A |
rs8034191 | 24563194 | 64399 | HHIP | umls:C0034067 | BeFree | We found strong genetic associations between the mild upper zone emphysema group and rs1980057 near HHIP, and between the severe emphysema group and rs8034191 in the chromosome 15q region (p<0.001). | 0.000271442 | 2014 | HYKK | 15 | 78513681 | T | C |
GWASdb Annotation(Total Genotypes:0) | |
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(Waiting for update.) |
GWASdb Snp Trait(Total Genotypes:19) | |||||||||||||||||||||||||||||
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CHR | POS | SNPID | REF | ALT | ORI_SNPID | PMID | P_VALUE | P_VALUE_TEXT | OR/BETA | CI95_TEXT | GWAS_INITIAL_SAMPLE_SIZE | SUB_POPULATION | SUPER_POPULATION | GWAS_TRAIT | HPO_ID | HPO_TERM | DO_ID | DO_TERM | MESH_ID | MESH_TERM | EFO_ID | EFO_TERM | DOLITE_TERM | RISK_ALLELE | PUBLICATION_TYPE | AA | GENE_SYMBOL | TYPE | REFGENE |
5 | 30661573 | rs9292394 | G | T | rs9292394 | 20709820 | 2.00E-06 | quantitative | 1.83 | [NA] HU increase | Up to 2,380 Caucasian individuals (including 1,455 Caucasian cases) | Caucasian(2380) | ALL(2380) | EUR(2380) | ALL(2380) | Emphysema-related traits | HPOID:0002097 | Emphysema | DOID:9675 | pulmonary emphysema | D004646 | Emphysema | NA | NA | Emphysema | rs9292394-T | Clinical Trial | Research Support, N.I.H., Extramural | Research Support, Non-U.S. Gov't |
5 | 144070311 | rs10065677 | C | T | rs10065677 | 20709820 | 7.60E-06 | NA | NA | NA | Up to 2,380 Caucasian individuals (including 1,455 Caucasian cases) | Caucasian(2380) | ALL(2380) | EUR(2380) | ALL(2380) | Emphysema-related traits | HPOID:0002097 | Emphysema | DOID:9675 | pulmonary emphysema | D004646 | Emphysema | NA | NA | Emphysema | NA | Clinical Trial | Research Support, N.I.H., Extramural | Research Support, Non-U.S. Gov't |
7 | 52472450 | rs1012036 | C | T | rs1012036 | 20709820 | 5.00E-06 | qualitative | 1.47 | NA | Up to 2,380 Caucasian individuals (including 1,455 Caucasian cases) | Caucasian(2380) | ALL(2380) | EUR(2380) | ALL(2380) | Emphysema-related traits | HPOID:0002097 | Emphysema | DOID:9675 | pulmonary emphysema | D004646 | Emphysema | NA | NA | Emphysema | rs1012036-C | Clinical Trial | Research Support, N.I.H., Extramural | Research Support, Non-U.S. Gov't |
8 | 2734202 | rs341672 | T | C | rs341672 | 20709820 | 8.50E-06 | NA | NA | NA | Up to 2,380 Caucasian individuals (including 1,455 Caucasian cases) | Caucasian(2380) | ALL(2380) | EUR(2380) | ALL(2380) | Emphysema-related traits | HPOID:0002097 | Emphysema | DOID:9675 | pulmonary emphysema | D004646 | Emphysema | NA | NA | Emphysema | NA | Clinical Trial | Research Support, N.I.H., Extramural | Research Support, Non-U.S. Gov't |
8 | 2740502 | rs641525 | T | G | rs641525 | 20709820 | 5.00E-07 | qualitative | 2.19 | NA | Up to 2,380 Caucasian individuals (including 1,455 Caucasian cases) | Caucasian(2380) | ALL(2380) | EUR(2380) | ALL(2380) | Emphysema-related traits | HPOID:0002097 | Emphysema | DOID:9675 | pulmonary emphysema | D004646 | Emphysema | NA | NA | Emphysema | rs641525-T | Clinical Trial | Research Support, N.I.H., Extramural | Research Support, Non-U.S. Gov't |
10 | 1630821 | rs2999399 | C | T | rs2999399 | 20709820 | 6.00E-06 | qualitative | 1.47 | NA | Up to 2,380 Caucasian individuals (including 1,455 Caucasian cases) | Caucasian(2380) | ALL(2380) | EUR(2380) | ALL(2380) | Emphysema-related traits | HPOID:0002097 | Emphysema | DOID:9675 | pulmonary emphysema | D004646 | Emphysema | NA | NA | Emphysema | rs2999399-T | Clinical Trial | Research Support, N.I.H., Extramural | Research Support, Non-U.S. Gov't |
10 | 34231275 | rs7905537 | A | C | rs7905537 | 20709820 | 8.00E-07 | quantitative | 1.85 | [NA] HU increase | Up to 2,380 Caucasian individuals (including 1,455 Caucasian cases) | Caucasian(2380) | ALL(2380) | EUR(2380) | ALL(2380) | Emphysema-related traits | HPOID:0002097 | Emphysema | DOID:9675 | pulmonary emphysema | D004646 | Emphysema | NA | NA | Emphysema | rs7905537-A | Clinical Trial | Research Support, N.I.H., Extramural | Research Support, Non-U.S. Gov't |
10 | 45307205 | rs10900114 | T | C | rs10900114 | 20709820 | 8.40E-06 | NA | NA | NA | Up to 2,380 Caucasian individuals (including 1,455 Caucasian cases) | Caucasian(2380) | ALL(2380) | EUR(2380) | ALL(2380) | Emphysema-related traits | HPOID:0002097 | Emphysema | DOID:9675 | pulmonary emphysema | D004646 | Emphysema | NA | NA | Emphysema | NA | Clinical Trial | Research Support, N.I.H., Extramural | Research Support, Non-U.S. Gov't |
10 | 45319654 | rs7911712 | G | A | rs7911712 | 20709820 | 6.00E-06 | quantitative | 2.05 | [NA] HU increase | Up to 2,380 Caucasian individuals (including 1,455 Caucasian cases) | Caucasian(2380) | ALL(2380) | EUR(2380) | ALL(2380) | Emphysema-related traits | HPOID:0002097 | Emphysema | DOID:9675 | pulmonary emphysema | D004646 | Emphysema | NA | NA | Emphysema | rs7911712-A | Clinical Trial | Research Support, N.I.H., Extramural | Research Support, Non-U.S. Gov't |
10 | 54410202 | rs1348350 | C | A | rs1348350 | 20709820 | 3.10E-06 | NA | NA | NA | Up to 2,380 Caucasian individuals (including 1,455 Caucasian cases) | Caucasian(2380) | ALL(2380) | EUR(2380) | ALL(2380) | Emphysema-related traits | HPOID:0002097 | Emphysema | DOID:9675 | pulmonary emphysema | D004646 | Emphysema | NA | NA | Emphysema | NA | Clinical Trial | Research Support, N.I.H., Extramural | Research Support, Non-U.S. Gov't |
11 | 80110511 | rs2448276 | C | T | rs2448276 | 20709820 | 5.20E-06 | NA | NA | NA | Up to 2,380 Caucasian individuals (including 1,455 Caucasian cases) | Caucasian(2380) | ALL(2380) | EUR(2380) | ALL(2380) | Emphysema-related traits | HPOID:0002097 | Emphysema | DOID:9675 | pulmonary emphysema | D004646 | Emphysema | NA | NA | Emphysema | NA | Clinical Trial | Research Support, N.I.H., Extramural | Research Support, Non-U.S. Gov't |
12 | 32380501 | rs10844154 | A | C | rs10844154 | 20709820 | 6.00E-07 | qualitative | 1.46 | NA | Up to 2,380 Caucasian individuals (including 1,455 Caucasian cases) | Caucasian(2380) | ALL(2380) | EUR(2380) | ALL(2380) | Emphysema-related traits | HPOID:0002097 | Emphysema | DOID:9675 | pulmonary emphysema | D004646 | Emphysema | NA | NA | Emphysema | rs10844154-C | Clinical Trial | Research Support, N.I.H., Extramural | Research Support, Non-U.S. Gov't |
12 | 32394104 | rs326633 | C | T | rs326633 | 20709820 | 1.10E-06 | NA | NA | NA | Up to 2,380 Caucasian individuals (including 1,455 Caucasian cases) | Caucasian(2380) | ALL(2380) | EUR(2380) | ALL(2380) | Emphysema-related traits | HPOID:0002097 | Emphysema | DOID:9675 | pulmonary emphysema | D004646 | Emphysema | NA | NA | Emphysema | NA | Clinical Trial | Research Support, N.I.H., Extramural | Research Support, Non-U.S. Gov't |
12 | 32418251 | rs161981 | T | C | rs161981 | 20709820 | 6.10E-07 | NA | NA | NA | Up to 2,380 Caucasian individuals (including 1,455 Caucasian cases) | Caucasian(2380) | ALL(2380) | EUR(2380) | ALL(2380) | Emphysema-related traits | HPOID:0002097 | Emphysema | DOID:9675 | pulmonary emphysema | D004646 | Emphysema | NA | NA | Emphysema | NA | Clinical Trial | Research Support, N.I.H., Extramural | Research Support, Non-U.S. Gov't |
12 | 32422835 | rs261869 | A | G | rs261869 | 20709820 | 8.10E-06 | NA | NA | NA | Up to 2,380 Caucasian individuals (including 1,455 Caucasian cases) | Caucasian(2380) | ALL(2380) | EUR(2380) | ALL(2380) | Emphysema-related traits | HPOID:0002097 | Emphysema | DOID:9675 | pulmonary emphysema | D004646 | Emphysema | NA | NA | Emphysema | NA | Clinical Trial | Research Support, N.I.H., Extramural | Research Support, Non-U.S. Gov't |
12 | 32426389 | rs2129590 | A | G | rs2129590 | 20709820 | 4.80E-06 | NA | NA | NA | Up to 2,380 Caucasian individuals (including 1,455 Caucasian cases) | Caucasian(2380) | ALL(2380) | EUR(2380) | ALL(2380) | Emphysema-related traits | HPOID:0002097 | Emphysema | DOID:9675 | pulmonary emphysema | D004646 | Emphysema | NA | NA | Emphysema | NA | Clinical Trial | Research Support, N.I.H., Extramural | Research Support, Non-U.S. Gov't |
12 | 126661071 | rs7977375 | C | T | rs7977375 | 20709820 | 4.00E-06 | NA | NA | NA | Up to 2,380 Caucasian individuals (including 1,455 Caucasian cases) | Caucasian(2380) | ALL(2380) | EUR(2380) | ALL(2380) | Emphysema-related traits | HPOID:0002097 | Emphysema | DOID:9675 | pulmonary emphysema | D004646 | Emphysema | NA | NA | Emphysema | NA | Clinical Trial | Research Support, N.I.H., Extramural | Research Support, Non-U.S. Gov't |
14 | 94795492 | rs4905179 | A | G | rs4905179 | 20709820 | 9.80E-06 | NA | NA | NA | Up to 2,380 Caucasian individuals (including 1,455 Caucasian cases) | Caucasian(2380) | ALL(2380) | EUR(2380) | ALL(2380) | Emphysema-related traits | HPOID:0002097 | Emphysema | DOID:9675 | pulmonary emphysema | D004646 | Emphysema | NA | NA | Emphysema | NA | Clinical Trial | Research Support, N.I.H., Extramural | Research Support, Non-U.S. Gov't |
14 | 104807712 | rs8016091 | G | A | rs8016091 | 20709820 | 4.10E-06 | NA | NA | NA | Up to 2,380 Caucasian individuals (including 1,455 Caucasian cases) | Caucasian(2380) | ALL(2380) | EUR(2380) | ALL(2380) | Emphysema-related traits | HPOID:0002097 | Emphysema | DOID:9675 | pulmonary emphysema | D004646 | Emphysema | NA | NA | Emphysema | NA | Clinical Trial | Research Support, N.I.H., Extramural | Research Support, Non-U.S. Gov't |
Mapped by lexical matching(Total Items:0) |
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(Waiting for update.) |
Mapped by homologous gene(Total Items:0) |
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(Waiting for update.) |
Chemical(Total Drugs:0) | |
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FDA approved drug and dosage information(Total Drugs:0) | |
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FDA labeling changes(Total Drugs:0) | |
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