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Pediatric Disease Annotations & Medicines



   noonan syndrome 1
  

Disease ID 1106
Disease noonan syndrome 1
Definition
A genetically heterogeneous, multifaceted disorder characterized by short stature, webbed neck, ptosis, skeletal malformations, hypertelorism, hormonal imbalance, CRYPTORCHIDISM, multiple cardiac abnormalities (most commonly including PULMONARY VALVE STENOSIS), and some degree of INTELLECTUAL DISABILITY. The phenotype bears similarities to that of TURNER SYNDROME that occurs only in females and has its basis in a 45, X karyotype abnormality. Noonan syndrome occurs in both males and females with a normal karyotype (46,XX and 46,XY). Mutations in a several genes (PTPN11, KRAS, SOS1, NF1 and RAF1) have been associated the the NS phenotype. Mutations in PTPN11 are the most common. LEOPARD SYNDROME, a disorder that has clinical features overlapping those of Noonan Syndrome, is also due to mutations in PTPN11. In addition, there is overlap with the syndrome called neurofibromatosis-Noonan syndrome due to mutations in NF1.
Synonym
familial syndrome turners
familial turner syndrome
male turner syndrome
males syndrome turners
noonan ehmke syndrome
noonan syndrome
noonan syndrome (disorder)
noonan syndrome [disease/finding]
noonan's syndrome
noonan's syndrome (disorder)
noonan-ehmke syndrome
noonans syndrome
ns1
pseudo ullrich turner syndrome
pseudo-turner syndrome
pseudo-ullrich-turner syndrome
syndrome, familial turner
syndrome, noonan
syndrome, noonan-ehmke
syndrome, pseudo-ullrich-turner
syndrome, turner-like
syndrome, ullrich-noonan
turner like syndrome
turner phenotype with normal karyotype
turner phenotype, karyotype normal
turner syndrome, familial
turner's phenotype, karyotype normal
turner's phenotype, karyotype normal (disorder)
turner-like syndrome
ullrich noonan syndrome
ullrich-noonan syndrome
ullrich-turner syndrome
Orphanet
OMIM
DOID
UMLS
C0028326
MeSH
SNOMED-CT
Curated Gene
Entrez_id | Symbol | Resource(Total Genes:17)
RAF1  |  5894  |  CLINVAR;CTD_human;ORPHANET;GHR
PTPN11  |  5781  |  CLINVAR;CTD_human;UNIPROT;ORPHANET;GHR
HRAS  |  3265  |  CTD_human
NRAS  |  4893  |  CTD_human;ORPHANET;GHR
EPHA2  |  1969  |  CTD_human
BRAF  |  673  |  CTD_human;ORPHANET;GHR
KRAS  |  3845  |  CTD_human;ORPHANET;GHR
MAP2K1  |  5604  |  CTD_human
MAP2K2  |  5605  |  CTD_human
KAT6B  |  23522  |  ORPHANET
SHOC2  |  8036  |  CTD_human
LZTR1  |  8216  |  ORPHANET
SOS2  |  6655  |  ORPHANET
SOS1  |  6654  |  CLINVAR;CTD_human;ORPHANET;GHR
RIT1  |  6016  |  ORPHANET
A2ML1  |  144568  |  ORPHANET
RASA2  |  5922  |  ORPHANET
Inferring Gene
Entrez_id | Symbol | Resource(Total Genes:4)
3845  |  KRAS  |  infer
5781  |  PTPN11  |  infer
5894  |  RAF1  |  infer
6654  |  SOS1  |  infer
Text Mined Gene
Entrez_id | Symbol | Score | Resource(Total Genes:120)
100419743  |  DBET  |  DISEASES
2273  |  FHL1  |  DISEASES
6128  |  RPL6  |  DISEASES
2327  |  FMO2  |  DISEASES
8216  |  LZTR1  |  DISEASES
5594  |  MAPK1  |  DISEASES
6655  |  SOS2  |  DISEASES
128674  |  PROKR2  |  DISEASES
54922  |  RASIP1  |  DISEASES
3696  |  ITGB8  |  DISEASES
51655  |  RASD1  |  DISEASES
2483  |  FRG1  |  DISEASES
4633  |  MYL2  |  DISEASES
2690  |  GHR  |  DISEASES
5341  |  PLEK  |  DISEASES
2693  |  GHSR  |  DISEASES
5911  |  RAP2A  |  DISEASES
7389  |  UROD  |  DISEASES
6237  |  RRAS  |  DISEASES
8431  |  NR0B2  |  DISEASES
3845  |  KRAS  |  DISEASES
22800  |  RRAS2  |  DISEASES
377  |  ARF3  |  DISEASES
1840  |  DTX1  |  DISEASES
26160  |  IFT172  |  DISEASES
8482  |  SEMA7A  |  DISEASES
5605  |  MAP2K2  |  DISEASES
2549  |  GAB1  |  DISEASES
5595  |  MAPK3  |  DISEASES
867  |  CBL  |  DISEASES
1950  |  EGF  |  DISEASES
207  |  AKT1  |  DISEASES
5921  |  RASA1  |  DISEASES
5805  |  PTS  |  DISEASES
2059  |  EPS8  |  DISEASES
23389  |  MED13L  |  DISEASES
7545  |  ZIC1  |  DISEASES
23118  |  TAB2  |  DISEASES
5922  |  RASA2  |  DISEASES
23522  |  KAT6B  |  DISEASES
22808  |  MRAS  |  DISEASES
70  |  ACTC1  |  DISEASES
6777  |  STAT5B  |  DISEASES
3549  |  IHH  |  DISEASES
5500  |  PPP1CB  |  DISEASES
161742  |  SPRED1  |  DISEASES
10818  |  FRS2  |  DISEASES
144568  |  A2ML1  |  DISEASES
5604  |  MAP2K1  |  DISEASES
3479  |  IGF1  |  DISEASES
9451  |  EIF2AK3  |  DISEASES
121391  |  KRT74  |  DISEASES
5778  |  PTPN7  |  DISEASES
3265  |  HRAS  |  DISEASES
2771  |  GNAI2  |  DISEASES
1442  |  CSH1  |  DISEASES
5912  |  RAP2B  |  DISEASES
2692  |  GHRHR  |  DISEASES
78987  |  CRELD1  |  DISEASES
10215  |  OLIG2  |  DISEASES
9146  |  HGS  |  DISEASES
151888  |  BTLA  |  DISEASES
5501  |  PPP1CC  |  DISEASES
55795  |  PCID2  |  DISEASES
2885  |  GRB2  |  DISEASES
5781  |  PTPN11  |  DISEASES
23136  |  EPB41L3  |  DISEASES
6776  |  STAT5A  |  DISEASES
6731  |  SRP72  |  DISEASES
10620  |  ARID3B  |  DISEASES
54820  |  NDE1  |  DISEASES
200734  |  SPRED2  |  DISEASES
23513  |  SCRIB  |  DISEASES
4606  |  MYBPC2  |  DISEASES
23224  |  SYNE2  |  DISEASES
6714  |  SRC  |  DISEASES
4763  |  NF1  |  DISEASES
157680  |  VPS13B  |  DISEASES
8822  |  FGF17  |  DISEASES
9019  |  MPZL1  |  DISEASES
147409  |  DSG4  |  DISEASES
25942  |  SIN3A  |  DISEASES
23456  |  ABCB10  |  DISEASES
2328  |  FMO3  |  DISEASES
6016  |  RIT1  |  DISEASES
8036  |  SHOC2  |  DISEASES
4893  |  NRAS  |  DISEASES
2258  |  FGF13  |  DISEASES
51442  |  VGLL1  |  DISEASES
4774  |  NFIA  |  DISEASES
8813  |  DPM1  |  DISEASES
2245  |  FGD1  |  DISEASES
8451  |  CUL4A  |  DISEASES
8858  |  PROZ  |  DISEASES
369  |  ARAF  |  DISEASES
51160  |  VPS28  |  DISEASES
3980  |  LIG3  |  DISEASES
2563  |  GABRD  |  DISEASES
448831  |  FRG2  |  DISEASES
5786  |  PTPRA  |  DISEASES
3486  |  IGFBP3  |  DISEASES
6473  |  SHOX  |  DISEASES
1443  |  CSH2  |  DISEASES
594855  |  CPLX3  |  DISEASES
4784  |  NFIX  |  DISEASES
9969  |  MED13  |  DISEASES
5609  |  MAP2K7  |  DISEASES
23426  |  GRIP1  |  DISEASES
6654  |  SOS1  |  DISEASES
2160  |  F11  |  DISEASES
57057  |  TBX20  |  DISEASES
4776  |  NFATC4  |  DISEASES
55599  |  RNPC3  |  DISEASES
5795  |  PTPRJ  |  DISEASES
3483  |  IGFALS  |  DISEASES
4043  |  LRPAP1  |  DISEASES
6452  |  SH3BP2  |  DISEASES
4168  |  MCF2  |  DISEASES
23263  |  MCF2L  |  DISEASES
64220  |  STRA6  |  DISEASES
Locus(Waiting for update.)
Disease ID 1106
Disease noonan syndrome 1
Integrated Phenotype(Waiting for update.)
Text Mined Phenotype(Waiting for update.)
Disease ID 1106
Disease noonan syndrome 1
Manually Symptom(Waiting for update.)
Text Mined Symptom(Waiting for update.)
Manually Genotype(Total Text Mining Genotypes:0)
(Waiting for update.)
All Snps(Total Genotypes:63)
snpId pubmedId geneId geneSymbol diseaseId sourceId sentence score Year geneSymbol_dbSNP CHROMOSOME POS REF ALT
rs104894229173246473845KRASumls:C0028326BeFreeWe have observed unusual transverse distal phalangeal creases in two patients, one with Costello syndrome (G12S mutation in the HRAS gene) and one with cardio-facio-cutaneous (CFC) syndrome or possibly Noonan syndrome (Q22E mutation in the KRAS gene).0.2649701092007HRAS;LRRC5611534289CT,G,A
rs104894229173246473265HRASumls:C0028326BeFreeWe have observed unusual transverse distal phalangeal creases in two patients, one with Costello syndrome (G12S mutation in the HRAS gene) and one with cardio-facio-cutaneous (CFC) syndrome or possibly Noonan syndrome (Q22E mutation in the KRAS gene).0.1210857672007HRAS;LRRC5611534289CT,G,A
rs121913530173246473845KRASumls:C0028326BeFreeWe have observed unusual transverse distal phalangeal creases in two patients, one with Costello syndrome (G12S mutation in the HRAS gene) and one with cardio-facio-cutaneous (CFC) syndrome or possibly Noonan syndrome (Q22E mutation in the KRAS gene).0.2649701092007KRAS1225245351CT,G,A
rs121913530173246473265HRASumls:C0028326BeFreeWe have observed unusual transverse distal phalangeal creases in two patients, one with Costello syndrome (G12S mutation in the HRAS gene) and one with cardio-facio-cutaneous (CFC) syndrome or possibly Noonan syndrome (Q22E mutation in the KRAS gene).0.1210857672007KRAS1225245351CT,G,A
rs121918453171771985781PTPN11umls:C0028326BeFreeWild type SHP-2 and four disease-associated mutants recurring in hematologic malignancies (Glu76Lys and Ala72Val) or causing NS (Glu76Asp and Ala72Ser), with affected residues located in the PTP-interacting region of the N-SH2 domain, were analyzed by molecular dynamics simulations and in vitro biochemical assays.0.6944468192007PTPN1112112450394GA,C,T
rs121918453NA5781PTPN11umls:C0028326CLINVARNA0.694446819NAPTPN1112112450394GA,C,T
rs121918454NA5781PTPN11umls:C0028326CLINVARNA0.694446819NAPTPN1112112450395CG,T
rs121918455NA5781PTPN11umls:C0028326CLINVARNA0.694446819NAPTPN1112112477720AC,G
rs121918456NA5781PTPN11umls:C0028326CLINVARNA0.694446819NAPTPN1112112473023AC,G
rs121918456121615965781PTPN11umls:C0028326BeFreeWe hypothesise that some PTPN11 mutations are associated with the typical Noonan syndrome phenotype and that other mutations, such as the Y279C mutation reported here, are associated with both the Noonan syndrome phenotype and with skin pigmentation anomalies, such as multiple lentigines or café au lait spots.0.6944468192002PTPN1112112473023AC,G
rs121918457NA5781PTPN11umls:C0028326CLINVARNA0.694446819NAPTPN1112112488466CT
rs121918458NA5781PTPN11umls:C0028326CLINVARNA0.694446819NAPTPN1112112489080TA,G
rs1219184592271152952ACP1umls:C0028326BeFreeCounteracting effects operating on Src homology 2 domain-containing protein-tyrosine phosphatase 2 (SHP2) function drive selection of the recurrent Y62D and Y63C substitutions in Noonan syndrome.0.004343072012PTPN1112112450368AG
rs121918459227115295781PTPN11umls:C0028326BeFreeCounteracting effects operating on Src homology 2 domain-containing protein-tyrosine phosphatase 2 (SHP2) function drive selection of the recurrent Y62D and Y63C substitutions in Noonan syndrome.0.6944468192012PTPN1112112450368AG
rs121918459NA5781PTPN11umls:C0028326CLINVARNA0.694446819NAPTPN1112112450368AG
rs121918460NA5781PTPN11umls:C0028326CLINVARNA0.694446819NAPTPN1112112450364TA,G
rs1219184602271152952ACP1umls:C0028326BeFreeCounteracting effects operating on Src homology 2 domain-containing protein-tyrosine phosphatase 2 (SHP2) function drive selection of the recurrent Y62D and Y63C substitutions in Noonan syndrome.0.004343072012PTPN1112112450364TA,G
rs121918460227115295781PTPN11umls:C0028326BeFreeCounteracting effects operating on Src homology 2 domain-containing protein-tyrosine phosphatase 2 (SHP2) function drive selection of the recurrent Y62D and Y63C substitutions in Noonan syndrome.0.6944468192012PTPN1112112450364TA,G
rs121918461NA5781PTPN11umls:C0028326CLINVARNA0.694446819NAPTPN1112112450362AC,G,T
rs121918462NA5781PTPN11umls:C0028326CLINVARNA0.694446819NAPTPN1112112450398CT
rs121918462234461785781PTPN11umls:C0028326BeFreeA de novo T73I mutation in PTPN11 in a neonate with severe and prolonged congenital thrombocytopenia and Noonan syndrome.0.6944468192012PTPN1112112450398CT
rs121918463NA5781PTPN11umls:C0028326CLINVARNA0.694446819NAPTPN1112112477651TA,C,G
rs121918464171771985781PTPN11umls:C0028326BeFreeWild type SHP-2 and four disease-associated mutants recurring in hematologic malignancies (Glu76Lys and Ala72Val) or causing NS (Glu76Asp and Ala72Ser), with affected residues located in the PTP-interacting region of the N-SH2 domain, were analyzed by molecular dynamics simulations and in vitro biochemical assays.0.6944468192007PTPN1112112450406GA,C
rs121918464NA5781PTPN11umls:C0028326CLINVARNA0.694446819NAPTPN1112112450406GA,C
rs121918466176417795781PTPN11umls:C0028326BeFreeTo understand the developmental stage- and cell type-specific consequences of the NS SHP2 gain-of-function mutation, Q79R, we generated transgenic mice in which the mutated protein was expressed during gestation or following birth in cardiomyocytes.0.6944468192007PTPN1112112450416AG
rs121918466161665575781PTPN11umls:C0028326BeFreeNoonan syndrome mutation Q79R in Shp2 increases proliferation of valve primordia mesenchymal cells via extracellular signal-regulated kinase 1/2 signaling.0.6944468192005PTPN1112112450416AG
rs121918466NA5781PTPN11umls:C0028326CLINVARNA0.694446819NAPTPN1112112450416AG
rs137852812NA6654SOS1umls:C0028326CLINVARNA0.392971407NASOS1239051211GT
rs1378528132452219356731SLC2A4RGumls:C0028326BeFreeIntriguingly, CIIA failed to inhibit the Ras-specific GEF activity of Noonan-syndrome-associated SOS1 mutants (M269R, R552G, W729L and E846K).0.0005428842014SOS1239051202AG,C
rs137852813245221939181ARHGEF2umls:C0028326BeFreeIntriguingly, CIIA failed to inhibit the Ras-specific GEF activity of Noonan-syndrome-associated SOS1 mutants (M269R, R552G, W729L and E846K).0.0005428842014SOS1239051202AG,C
rs137852813245221936654SOS1umls:C0028326BeFreeIntriguingly, CIIA failed to inhibit the Ras-specific GEF activity of Noonan-syndrome-associated SOS1 mutants (M269R, R552G, W729L and E846K).0.3929714072014SOS1239051202AG,C
rs1378528142452219356731SLC2A4RGumls:C0028326BeFreeIntriguingly, CIIA failed to inhibit the Ras-specific GEF activity of Noonan-syndrome-associated SOS1 mutants (M269R, R552G, W729L and E846K).0.0005428842014SOS1239022774TC
rs137852814245221939181ARHGEF2umls:C0028326BeFreeIntriguingly, CIIA failed to inhibit the Ras-specific GEF activity of Noonan-syndrome-associated SOS1 mutants (M269R, R552G, W729L and E846K).0.0005428842014SOS1239022774TC
rs137852814245221936654SOS1umls:C0028326BeFreeIntriguingly, CIIA failed to inhibit the Ras-specific GEF activity of Noonan-syndrome-associated SOS1 mutants (M269R, R552G, W729L and E846K).0.3929714072014SOS1239022774TC
rs137852814NA6654SOS1umls:C0028326CLINVARNA0.392971407NASOS1239022774TC
rs267607079NA6654SOS1umls:C0028326CLINVARNA0.392971407NASOS1239022772CG,A
rs28933386NA5781PTPN11umls:C0028326CLINVARNA0.694446819NAPTPN1112112477719AG
rs28933387119922615781PTPN11umls:C0028326UNIPROTPTPN11 mutations in Noonan syndrome: molecular spectrum, genotype-phenotype correlation, and phenotypic heterogeneity.0.6944468192002NANANANANA
rs3730271233917225894RAF1umls:C0028326BeFreeExcessive production of lymphatic ECs resulted in lymphangiectasia that was highly reminiscent of abnormal lymphatics seen in Noonan syndrome and similar RASopathies. Inhibition of ERK signaling during development abrogated the lymphatic differentiation program and rescued the lymphatic phenotypes induced by expression of RAF1(S259A).0.3838843422013RAF1312604195AT,G
rs397507501NA5781PTPN11umls:C0028326CLINVARNA0.694446819NAPTPN1112112446385AG
rs397507505168043145781PTPN11umls:C0028326BeFreeDoes the rare A172G mutation of PTPN11 gene convey a mild Noonan syndrome phenotype?0.6944468192006PTPN1112112450352AC,G,T
rs397507514171771985781PTPN11umls:C0028326BeFreeWild type SHP-2 and four disease-associated mutants recurring in hematologic malignancies (Glu76Lys and Ala72Val) or causing NS (Glu76Asp and Ala72Ser), with affected residues located in the PTP-interacting region of the N-SH2 domain, were analyzed by molecular dynamics simulations and in vitro biochemical assays.0.6944468192007PTPN1112112450408GC,T
rs397507517NA5781PTPN11umls:C0028326CLINVARNA0.694446819NAPTPN1112112450497AC
rs397507520NA5781PTPN11umls:C0028326CLINVARNA0.694446819NAPTPN1112112453279GC,T
rs397507520223151875781PTPN11umls:C0028326BeFreeOccurrence of acute lymphoblastic leukemia and juvenile myelomonocytic leukemia in a patient with Noonan syndrome carrying the germline PTPN11 mutation p.E139D.0.6944468192012PTPN1112112453279GC,T
rs397507539NA5781PTPN11umls:C0028326CLINVARNA0.694446819NAPTPN1112112489047CA,G,T
rs397507540NA5781PTPN11umls:C0028326CLINVARNA0.694446819NAPTPN1112112489048CA,T
rs397507545247543685781PTPN11umls:C0028326BeFreeThe baby had no dysmorphic facial features and was diagnosed postmortem with Noonan syndrome by genomic DNA sequence analysis as he had a heterozygous mutation for G503R in the PTPN11 gene.0.6944468192015PTPN1112112489083GA,C
rs397507545NA5781PTPN11umls:C0028326CLINVARNA0.694446819NAPTPN1112112489083GA,C
rs397507547NA5781PTPN11umls:C0028326CLINVARNA0.694446819NAPTPN1112112489086AG
rs397507548225286005781PTPN11umls:C0028326BeFreeWe report on a 26-year-old female with features of Noonan syndrome-Multiple Lentigines and a heterozygous mutation: c.1517A > C-p.Gln506Pro in the PTPN11 gene.0.6944468192012PTPN1112112489093AC
rs397509345225286005781PTPN11umls:C0028326BeFreeWe report on a 26-year-old female with features of Noonan syndrome-Multiple Lentigines and a heterozygous mutation: c.1517A > C-p.Gln506Pro in the PTPN11 gene.0.6944468192012NANANANANA
rs397516830NA5894RAF1umls:C0028326CLINVARNA0.383884342NARAF1312604182AC
rs397517147184567196654SOS1umls:C0028326BeFreeThe SOS1 E433K mutation, identified in a patient diagnosed with CFC, has previously been reported in patients with NS.0.3929714072008SOS1239023131CT
rs397517150NA6654SOS1umls:C0028326CLINVARNA0.392971407NASOS1239023118AG,C
rs397517154NA6654SOS1umls:C0028326CLINVARNA0.392971407NASOS1239022773CT,G
rs397517159245221939181ARHGEF2umls:C0028326BeFreeIntriguingly, CIIA failed to inhibit the Ras-specific GEF activity of Noonan-syndrome-associated SOS1 mutants (M269R, R552G, W729L and E846K).0.0005428842014SOS1239007168CT
rs3975171592452219356731SLC2A4RGumls:C0028326BeFreeIntriguingly, CIIA failed to inhibit the Ras-specific GEF activity of Noonan-syndrome-associated SOS1 mutants (M269R, R552G, W729L and E846K).0.0005428842014SOS1239007168CT
rs397517159245221936654SOS1umls:C0028326BeFreeIntriguingly, CIIA failed to inhibit the Ras-specific GEF activity of Noonan-syndrome-associated SOS1 mutants (M269R, R552G, W729L and E846K).0.3929714072014SOS1239007168CT
rs587782971NA5894RAF1umls:C0028326CLINVARNA0.383884342NARAF1312608895AG
rs587782972NA5894RAF1umls:C0028326CLINVARNA0.383884342NARAF1312591729CA
rs727505381NA6654SOS1umls:C0028326CLINVARNA0.392971407NASOS1239013523AG
rs80338796NA5894RAF1umls:C0028326CLINVARNA0.383884342NARAF1312604200GC,A
GWASdb Annotation(Total Genotypes:0)
(Waiting for update.)
GWASdb Snp Trait(Total Genotypes:0)
(Waiting for update.)
Mapped by lexical matching(Total Items:0)
(Waiting for update.)
Mapped by homologous gene(Total Items:0)
(Waiting for update.)
Chemical(Total Drugs:0)
(Waiting for update.)
FDA approved drug and dosage information(Total Drugs:0)
(Waiting for update.)
FDA labeling changes(Total Drugs:0)
(Waiting for update.)