neuromyelitis optica |
Disease ID | 56 |
---|---|
Disease | neuromyelitis optica |
Manually Symptom | UMLS | Name(Total Manually Symptoms:7) |
Text Mined Symptom | UMLS | Name | Sentences' Count(Total Symptoms:1) |
Manually Genotype(Total Text Mining Genotypes:0) |
---|
(Waiting for update.) |
All Snps(Total Genotypes:10) | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
snpId | pubmedId | geneId | geneSymbol | diseaseId | sourceId | sentence | score | Year | geneSymbol_dbSNP | CHROMOSOME | POS | REF | ALT |
rs1016140 | 24655566 | 361 | AQP4 | umls:C0027873 | BeFree | Also, we deduced that the G allele of rs1016140 caused an increase of T cell activity, which in turn eased the access of AQP4 antibody into central nervous system (CNS) and ultimately leading to NMO development. | 0.148551054 | 2014 | CD58 | 1 | 116533925 | G | T |
rs12288280 | 22994200 | 7132 | TNFRSF1A | umls:C0027873 | BeFree | Logistic analyses revealed that one SNP in CD6 (rs12288280, P = 0.04) and three SNPs in TNFRSF1A (rs767455, rs4149577 and rs1800693, P = 0.01-0.03) were associated with NMO. | 0.000542884 | 2012 | CD6 | 11 | 60988884 | G | T |
rs1800693 | 24927785 | 7132 | TNFRSF1A | umls:C0027873 | BeFree | Among the 35 SNPs, only one, rs1800693 in the TNFRSF1A locus, was nominally associated with NMO (P = 0.045, OR = 1.550, 95% CI = 1.007-2.384). | 0.000542884 | 2014 | TNFRSF1A | 12 | 6330843 | T | C |
rs1800693 | 22994200 | 7132 | TNFRSF1A | umls:C0027873 | BeFree | Logistic analyses revealed that one SNP in CD6 (rs12288280, P = 0.04) and three SNPs in TNFRSF1A (rs767455, rs4149577 and rs1800693, P = 0.01-0.03) were associated with NMO. | 0.000542884 | 2012 | TNFRSF1A | 12 | 6330843 | T | C |
rs2282284 | 26402798 | 115352 | FCRL3 | umls:C0027873 | BeFree | The Fc Receptor-Like 3 Polymorphisms (rs7528684, rs945635, rs3761959 and rs2282284) and The Risk of Neuromyelitis Optica in A Chinese Population. | 0.000271442 | 2015 | FCRL3 | 1 | 157678753 | T | C |
rs3761959 | 26402798 | 115352 | FCRL3 | umls:C0027873 | BeFree | The Fc Receptor-Like 3 Polymorphisms (rs7528684, rs945635, rs3761959 and rs2282284) and The Risk of Neuromyelitis Optica in A Chinese Population. | 0.000271442 | 2015 | FCRL3 | 1 | 157699488 | C | T |
rs4149577 | 22994200 | 7132 | TNFRSF1A | umls:C0027873 | BeFree | Logistic analyses revealed that one SNP in CD6 (rs12288280, P = 0.04) and three SNPs in TNFRSF1A (rs767455, rs4149577 and rs1800693, P = 0.01-0.03) were associated with NMO. | 0.000542884 | 2012 | TNFRSF1A | 12 | 6338356 | G | A |
rs7528684 | 26402798 | 115352 | FCRL3 | umls:C0027873 | BeFree | The Fc Receptor-Like 3 Polymorphisms (rs7528684, rs945635, rs3761959 and rs2282284) and The Risk of Neuromyelitis Optica in A Chinese Population. | 0.000271442 | 2015 | FCRL3 | 1 | 157701026 | A | G |
rs767455 | 22994200 | 7132 | TNFRSF1A | umls:C0027873 | BeFree | Logistic analyses revealed that one SNP in CD6 (rs12288280, P = 0.04) and three SNPs in TNFRSF1A (rs767455, rs4149577 and rs1800693, P = 0.01-0.03) were associated with NMO. | 0.000542884 | 2012 | TNFRSF1A | 12 | 6341779 | T | C |
rs945635 | 26402798 | 115352 | FCRL3 | umls:C0027873 | BeFree | The Fc Receptor-Like 3 Polymorphisms (rs7528684, rs945635, rs3761959 and rs2282284) and The Risk of Neuromyelitis Optica in A Chinese Population. | 0.000271442 | 2015 | FCRL3 | 1 | 157700500 | C | A,G |
GWASdb Annotation(Total Genotypes:0) | |
---|---|
(Waiting for update.) |
GWASdb Snp Trait(Total Genotypes:18) | |||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CHR | POS | SNPID | REF | ALT | ORI_SNPID | PMID | P_VALUE | P_VALUE_TEXT | OR/BETA | CI95_TEXT | GWAS_INITIAL_SAMPLE_SIZE | SUB_POPULATION | SUPER_POPULATION | GWAS_TRAIT | HPO_ID | HPO_TERM | DO_ID | DO_TERM | MESH_ID | MESH_TERM | EFO_ID | EFO_TERM | DOLITE_TERM | RISK_ALLELE | PUBLICATION_TYPE | AA | GENE_SYMBOL | TYPE | REFGENE |
1 | 38465315 | rs4634868 | G | A | rs4634868 | 19850125 | 4.70E-05 | Neuromyelitis optica | NA | NA | 53 Korean cases; 240 Korean controls | Korean(293) | ALL(293) | ASN(293) | ALL(293) | Inflammatory demyelinating disease | HPOID:0002143 | Abnormality of the spinal cord | DOID:8869 | neuromyelitis optica | NA | NA | NA | NA | Central nervous system disease | NA | Research Support, Non-U.S. Gov't | T | FHL3 |
1 | 97949431 | rs4451581 | A | C | rs4451581 | 19850125 | 2.10E-05 | Neuromyelitis optica | NA | NA | 53 Korean cases; 240 Korean controls | Korean(293) | ALL(293) | ASN(293) | ALL(293) | Inflammatory demyelinating disease | HPOID:0002143 | Abnormality of the spinal cord | DOID:8869 | neuromyelitis optica | NA | NA | NA | NA | Central nervous system disease | NA | Research Support, Non-U.S. Gov't | C | DPYD |
1 | 211072392 | rs1501562 | C | T | rs1501562 | 19850125 | 1.60E-05 | Neuromyelitis optica | NA | NA | 53 Korean cases; 240 Korean controls | Korean(293) | ALL(293) | ASN(293) | ALL(293) | Inflammatory demyelinating disease | HPOID:0002143 | Abnormality of the spinal cord | DOID:8869 | neuromyelitis optica | NA | NA | NA | NA | Central nervous system disease | NA | Research Support, Non-U.S. Gov't | C | KCNH1 |
2 | 106366232 | rs997522 | G | A | rs997522 | 19850125 | 4.10E-05 | Neuromyelitis optica | NA | NA | 53 Korean cases; 240 Korean controls | Korean(293) | ALL(293) | ASN(293) | ALL(293) | Inflammatory demyelinating disease | HPOID:0002143 | Abnormality of the spinal cord | DOID:8869 | neuromyelitis optica | NA | NA | NA | NA | Central nervous system disease | NA | Research Support, Non-U.S. Gov't | G | NCK2 |
6 | 36165213 | rs4713936 | C | T | rs4713936 | 19850125 | 1.50E-05 | Neuromyelitis optica | NA | NA | 53 Korean cases; 240 Korean controls | Korean(293) | ALL(293) | ASN(293) | ALL(293) | Inflammatory demyelinating disease | HPOID:0002143 | Abnormality of the spinal cord | DOID:8869 | neuromyelitis optica | NA | NA | NA | NA | Central nervous system disease | NA | Research Support, Non-U.S. Gov't | C | BRPF3 |
6 | 137470756 | rs10484798 | T | C | rs10484798 | 19850125 | 8.00E-06 | Neuromyelitis optica | NA | NA | 53 Korean cases; 240 Korean controls | Korean(293) | ALL(293) | ASN(293) | ALL(293) | Inflammatory demyelinating disease | HPOID:0002143 | Abnormality of the spinal cord | DOID:8869 | neuromyelitis optica | NA | NA | NA | NA | Central nervous system disease | NA | Research Support, Non-U.S. Gov't | T | IL22RA2 |
7 | 146750254 | rs6980283 | G | T | rs6980283 | 19850125 | 1.20E-05 | Neuromyelitis optica | NA | NA | 53 Korean cases; 240 Korean controls | Korean(293) | ALL(293) | ASN(293) | ALL(293) | Inflammatory demyelinating disease | HPOID:0002143 | Abnormality of the spinal cord | DOID:8869 | neuromyelitis optica | NA | NA | NA | NA | Central nervous system disease | NA | Research Support, Non-U.S. Gov't | G | CNTNAP2 |
8 | 26717123 | rs563097 | A | G | rs563097 | 19850125 | 3.30E-05 | Neuromyelitis optica | NA | NA | 53 Korean cases; 240 Korean controls | Korean(293) | ALL(293) | ASN(293) | ALL(293) | Inflammatory demyelinating disease | HPOID:0002143 | Abnormality of the spinal cord | DOID:8869 | neuromyelitis optica | NA | NA | NA | NA | Central nervous system disease | NA | Research Support, Non-U.S. Gov't | T | ADRA1A |
8 | 59410439 | rs1457043 | C | T | rs1457043 | 19850125 | 1.50E-05 | Neuromyelitis optica | NA | NA | 53 Korean cases; 240 Korean controls | Korean(293) | ALL(293) | ASN(293) | ALL(293) | Inflammatory demyelinating disease | HPOID:0002143 | Abnormality of the spinal cord | DOID:8869 | neuromyelitis optica | NA | NA | NA | NA | Central nervous system disease | NA | Research Support, Non-U.S. Gov't | A | CYP7A1 |
8 | 59412924 | rs3808607 | G | T | rs3808607 | 19850125 | 1.00E-04 | Neuromyelitis optica | NA | NA | 53 Korean cases; 240 Korean controls | Korean(293) | ALL(293) | ASN(293) | ALL(293) | Inflammatory demyelinating disease | HPOID:0002143 | Abnormality of the spinal cord | DOID:8869 | neuromyelitis optica | NA | NA | NA | NA | Central nervous system disease | NA | Research Support, Non-U.S. Gov't | G | CYP7A1 |
10 | 1674132 | rs1909440 | G | A | rs1909440 | 19850125 | 1.10E-05 | Neuromyelitis optica | NA | NA | 53 Korean cases; 240 Korean controls | Korean(293) | ALL(293) | ASN(293) | ALL(293) | Inflammatory demyelinating disease | HPOID:0002143 | Abnormality of the spinal cord | DOID:8869 | neuromyelitis optica | NA | NA | NA | NA | Central nervous system disease | NA | Research Support, Non-U.S. Gov't | G | ADARB2 |
10 | 1684797 | rs4880897 | G | T | rs4880897 | 19850125 | 1.20E-05 | Neuromyelitis optica | NA | NA | 53 Korean cases; 240 Korean controls | Korean(293) | ALL(293) | ASN(293) | ALL(293) | Inflammatory demyelinating disease | HPOID:0002143 | Abnormality of the spinal cord | DOID:8869 | neuromyelitis optica | NA | NA | NA | NA | Central nervous system disease | NA | Research Support, Non-U.S. Gov't | G | ADARB2 |
10 | 1705247 | rs1909428 | A | G | rs1909428 | 19850125 | 7.40E-06 | Neuromyelitis optica | NA | NA | 53 Korean cases; 240 Korean controls | Korean(293) | ALL(293) | ASN(293) | ALL(293) | Inflammatory demyelinating disease | HPOID:0002143 | Abnormality of the spinal cord | DOID:8869 | neuromyelitis optica | NA | NA | NA | NA | Central nervous system disease | NA | Research Support, Non-U.S. Gov't | A | ADARB2 |
13 | 52570728 | rs732071 | G | A | rs732071 | 19850125 | 3.00E-05 | Neuromyelitis optica | NA | NA | 53 Korean cases; 240 Korean controls | Korean(293) | ALL(293) | ASN(293) | ALL(293) | Inflammatory demyelinating disease | HPOID:0002143 | Abnormality of the spinal cord | DOID:8869 | neuromyelitis optica | NA | NA | NA | NA | Central nervous system disease | NA | Research Support, Non-U.S. Gov't | T | ATP7B |
13 | 52593765 | rs7320831 | C | T | rs7320831 | 19850125 | 4.20E-05 | Neuromyelitis optica | NA | NA | 53 Korean cases; 240 Korean controls | Korean(293) | ALL(293) | ASN(293) | ALL(293) | Inflammatory demyelinating disease | HPOID:0002143 | Abnormality of the spinal cord | DOID:8869 | neuromyelitis optica | NA | NA | NA | NA | Central nervous system disease | NA | Research Support, Non-U.S. Gov't | T | ALG11 |
13 | 52601053 | rs9526823 | T | C | rs9526823 | 19850125 | 3.70E-05 | Neuromyelitis optica | NA | NA | 53 Korean cases; 240 Korean controls | Korean(293) | ALL(293) | ASN(293) | ALL(293) | Inflammatory demyelinating disease | HPOID:0002143 | Abnormality of the spinal cord | DOID:8869 | neuromyelitis optica | NA | NA | NA | NA | Central nervous system disease | NA | Research Support, Non-U.S. Gov't | C | UTP14C |
13 | 113074228 | rs1887649 | G | T | rs1887649 | 19850125 | 4.30E-05 | Neuromyelitis optica | NA | NA | 53 Korean cases; 240 Korean controls | Korean(293) | ALL(293) | ASN(293) | ALL(293) | Inflammatory demyelinating disease | HPOID:0002143 | Abnormality of the spinal cord | DOID:8869 | neuromyelitis optica | NA | NA | NA | NA | Central nervous system disease | NA | Research Support, Non-U.S. Gov't | C | SPACA7 |
18 | 60027241 | rs1805034 | C | T | rs1805034 | 19850125 | 3.60E-05 | Neuromyelitis optica | NA | NA | 53 Korean cases; 240 Korean controls | Korean(293) | ALL(293) | ASN(293) | ALL(293) | Inflammatory demyelinating disease | HPOID:0002143 | Abnormality of the spinal cord | DOID:8869 | neuromyelitis optica | NA | NA | NA | NA | Central nervous system disease | NA | Research Support, Non-U.S. Gov't | T | TNFRSF11A |
Mapped by lexical matching(Total Items:0) |
---|
(Waiting for update.) |
Mapped by homologous gene(Total Items:1) | ||||
---|---|---|---|---|
HP ID | HP Name | MP ID | MP Name | Annotation |
HP:0003396 | Syringomyelia | MP:0003651 | abnormal axon extension;HP:0100653 | Optic neuritis |
Chemical(Total Drugs:1) | |||||||||
---|---|---|---|---|---|---|---|---|---|
CUI | ChemicalName | ChemicalID | CasRN | DiseaseName | DiseaseID | DirectEvidence | PubMedIDs | ||
C0027873 | bupivacaine | D002045 | 2180-92-9 | neuromyelitis optica | MESH:D009471 | marker/mechanism | 14582781 |
FDA approved drug and dosage information(Total Drugs:0) | |
---|---|
(Waiting for update.) |
FDA labeling changes(Total Drugs:0) | |
---|---|
(Waiting for update.) |