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Pediatric Disease Annotations & Medicines



   lymphoma, non-hodgkin
  

Disease ID 691
Disease lymphoma, non-hodgkin
Synonym
[m]malignant lymphoma, non-hodgkin's type
[m]malignant lymphoma, small cleaved cell, diffuse
[m]malignant lymphoma, small cleaved cell, diffuse (morphologic abnormality)
[m]non-hodgkin's lymphoma
[x]non-hodgkin's lymphoma, unspecified type
[x]non-hodgkin's lymphoma, unspecified type (disorder)
diffuse non-hodgkin's small cleaved cell (diffuse) lymphoma
diffuse small cleaved cell lymphoma
diffuse small cleaved lymphoma
diffuse small cleaved-cell lymphoma
lymphoma small cleaved diffuse
lymphoma, atypical diffuse small lymphoid
lymphoma, non hodgkin
lymphoma, non hodgkin's
lymphoma, non hodgkins
lymphoma, non-hodgkin [disease/finding]
lymphoma, non-hodgkin's
lymphoma, non-hodgkin, familial
lymphoma, non-hodgkins
lymphoma, nonhodgkin
lymphoma, nonhodgkin's
lymphoma, nonhodgkins
lymphoma, small cleaved cell, diffuse
lymphoma, small cleaved-cell, diffuse
malignant lymphoma non hodgkins type
malignant lymphoma, cleaved cell [obs]
malignant lymphoma, non-hodgkin
malignant lymphoma, non-hodgkin's
malignant lymphoma, non-hodgkin's type
malignant lymphoma, non-hodgkin's, nos
malignant lymphoma, small cell, noncleaved, diffuse [obs]
malignant lymphoma, small cleaved cell [obs]
malignant lymphoma, small cleaved cell, diffuse -retired-
malignant lymphoma, small cleaved cell, diffuse [obs]
malignant lymphoma, undifferentiated cell type [obs]
malignant lymphoma, undifferentiated cell, non-burkitt [obs]
nhl
nhl - non-hodgkin's lymphoma
nhl, nos
non hodgkin lymphoma
non hodgkin's lymphoma
non hodgkin's lymphoma (nhl)
non hodgkins lymphoma
non-hodgkin lymphoma
non-hodgkin lymphoma (category)
non-hodgkin lymphoma - category
non-hodgkin lymphoma - category (morphologic abnormality)
non-hodgkin lymphoma, no icd-o subtype
non-hodgkin lymphoma, no icd-o subtype (morphologic abnormality)
non-hodgkin lymphoma, no international classification of diseases for oncology subtype
non-hodgkin lymphoma, no international classification of diseases for oncology subtype (morphologic abnormality)
non-hodgkin lymphoma, nos
non-hodgkin's lymphoma
non-hodgkin's lymphoma (clinical)
non-hodgkin's lymphoma (disorder)
non-hodgkin's lymphoma (nhl)
non-hodgkin's lymphoma - disorder
non-hodgkin's lymphoma nos
non-hodgkin's lymphoma, nos
non-hodgkin`s lymphoma
non-hodgkins lymphoma
nonhodgkin lymphoma
nonhodgkin's lymphoma
nonhodgkins lymphoma
small cleaved cell lymphoma, diffuse
small cleaved lymphoma diffuse
small cleaved-cell lymphoma, diffuse
Orphanet
OMIM
DOID
MeSH
SNOMED-CT
Comorbidity
UMLS | Disease | Sentences' Count(Total Sentences:95)
C0024299  |  lymphoma  |  31
C0079731  |  b-cell non-hodgkin lymphoma  |  13
C0024299  |  lymphomas  |  11
C0042769  |  virus infection  |  6
C0024301  |  follicular lymphoma  |  6
C0079731  |  b-cell lymphoma  |  5
C0270612  |  leukoencephalopathy  |  4
C0079744  |  diffuse large b-cell lymphoma  |  4
C0023418  |  leukemia  |  4
C0023524  |  progressive multifocal leukoencephalopathy  |  4
C0027947  |  neutropenia  |  3
C0032285  |  pneumonia  |  3
C0003864  |  arthritis  |  2
C0019360  |  zoster  |  2
C0019158  |  hepatitis  |  2
C0042384  |  vasculitis  |  2
C0019163  |  hepatitis b  |  2
C0004623  |  bacterial infections  |  2
C0376545  |  hematologic malignancies  |  2
C0019360  |  herpes zoster  |  2
C0004623  |  bacterial infection  |  2
C0006413  |  burkitt lymphoma  |  2
C0021053  |  immune disease  |  2
C0007114  |  skin cancer  |  2
C0742472  |  cns lymphoma  |  2
C0019196  |  hepatitis c  |  2
C0023449  |  acute lymphocytic leukemia  |  1
C0010068  |  coronary artery disease  |  1
C0019618  |  histiocytosis  |  1
C0003872  |  psoriatic arthritis  |  1
C0021053  |  immune dysfunction  |  1
C0027726  |  nephrotic syndrome  |  1
C0007114  |  skin cancers  |  1
C0014038  |  encephalitis  |  1
C0002880  |  autoimmune hemolytic anemia  |  1
C0744421  |  immune complex glomerulonephritis  |  1
C0023443  |  hairy cell leukemia  |  1
C0021053  |  immune disorders  |  1
C0023290  |  visceral leishmaniasis  |  1
C0030807  |  pemphigus  |  1
C0007570  |  celiac disease  |  1
C0026764  |  myeloma  |  1
C0023448  |  lymphocytic leukemia  |  1
C0036220  |  kaposi's sarcoma  |  1
C0032285  |  pneumonitis  |  1
C0017658  |  glomerulonephritis  |  1
C0017665  |  membranous glomerulonephritis  |  1
C0023473  |  chronic myeloid leukemia  |  1
C0026764  |  multiple myeloma  |  1
C0021053  |  immune disorder  |  1
C0242647  |  malt lymphoma  |  1
C0043194  |  wiskott-aldrich syndrome  |  1
C0334634  |  mantle cell lymphoma  |  1
C0007115  |  thyroid cancer  |  1
C0026948  |  mycosis fungoides  |  1
C0010403  |  cryoglobulinemia  |  1
C0206083  |  central pontine myelinolysis  |  1
C0011603  |  dermatitis  |  1
C0019829  |  hodgkin lymphoma  |  1
C0025202  |  melanoma  |  1
C0152025  |  polyneuropathy  |  1
C0206062  |  interstitial lung disease  |  1
C0026848  |  muscle disorders  |  1
C1261473  |  sarcoma  |  1
C0032305  |  pneumocystis pneumonia  |  1
C0023281  |  leishmaniasis  |  1
C0023470  |  myeloid leukemia  |  1
C0019069  |  hemophilia  |  1
C1275081  |  cardiofaciocutaneous syndrome  |  1
C0007115  |  thyroid ca  |  1
C0038362  |  stomatitis  |  1
C0003873  |  rheumatoid arthritis  |  1
C0023418  |  leukaemia  |  1
C0007134  |  renal cell carcinoma  |  1
C0026946  |  mycosis  |  1
C0024314  |  lymphoproliferative disease  |  1
C0040034  |  thrombocytopenia  |  1
C0699893  |  nonmelanoma skin cancer  |  1
C0282193  |  iron overload  |  1
C0079731  |  b cell lymphoma  |  1
C0002871  |  anemia  |  1
C0002878  |  hemolytic anemia  |  1
C0009402  |  colorectal cancer  |  1
C0024115  |  lung disease  |  1
C0011608  |  dermatitis herpetiformis  |  1
C0023827  |  liposarcoma  |  1
C0740372  |  gastrointestinal lymphoma  |  1
C0007113  |  rectal cancer  |  1
C0376545  |  hematological malignancies  |  1
C0021933  |  intussusception  |  1
C0019348  |  herpes simplex  |  1
C0032305  |  pneumocystis jiroveci pneumonia  |  1
C0032305  |  pneumocystis  |  1
C0085669  |  acute leukemia  |  1
C0027708  |  wilms' tumor  |  1
Curated Gene
Entrez_id | Symbol | Resource(Total Genes:23)
HLA-DRB1  |  3123  |  CTD_human
TP53  |  7157  |  CLINVAR
BCL2  |  596  |  CTD_human
BCL6  |  604  |  CTD_human
EPHX1  |  2052  |  CTD_human
CSF2  |  1437  |  CTD_human
TYMS  |  7298  |  CTD_human
CHEK2  |  11200  |  CTD_human
IFNA2  |  3440  |  CTD_human
MTHFR  |  4524  |  CTD_human
BRAF  |  673  |  CLINVAR;UNIPROT
CSF3  |  1440  |  CTD_human
RTEL1  |  51750  |  OMIM
CYP2E1  |  1571  |  CTD_human
SHMT1  |  6470  |  CTD_human
RAD54L  |  8438  |  CLINVAR;CTD_human
CASP10  |  843  |  CLINVAR;CTD_human;UNIPROT
BHMT  |  635  |  CTD_human
FPGS  |  2356  |  CTD_human
TFRC  |  7037  |  CTD_human
CBS  |  875  |  CTD_human
PRF1  |  5551  |  CLINVAR;CTD_human
RAD54B  |  25788  |  CLINVAR
Inferring Gene
Entrez_id | Symbol | Resource(Total Genes:259)
64746  |  ACBD3  |  infer
6868  |  ADAM17  |  infer
128  |  ADH5  |  infer
154  |  ADRB2  |  infer
155  |  ADRB3  |  infer
196  |  AHR  |  infer
10327  |  AKR1A1  |  infer
1645  |  AKR1C1  |  infer
8644  |  AKR1C3  |  infer
10840  |  ALDH1L1  |  infer
336  |  APOA2  |  infer
337  |  APOA4  |  infer
338  |  APOB  |  infer
348  |  APOE  |  infer
367  |  AR  |  infer
285973  |  ATG9B  |  infer
572  |  BAD  |  infer
578  |  BAK1  |  infer
581  |  BAX  |  infer
596  |  BCL2  |  infer
598  |  BCL2L1  |  infer
604  |  BCL6  |  infer
635  |  BHMT  |  infer
638  |  BIK  |  infer
641  |  BLM  |  infer
672  |  BRCA1  |  infer
713  |  C1QB  |  infer
714  |  C1QC  |  infer
114905  |  C1QTNF7  |  infer
51279  |  C1RL  |  infer
716  |  C1S  |  infer
717  |  C2  |  infer
718  |  C3  |  infer
719  |  C3AR1  |  infer
720  |  C4A  |  infer
722  |  C4BPA  |  infer
725  |  C4BPB  |  infer
727  |  C5  |  infer
728  |  C5AR1  |  infer
729  |  C6  |  infer
730  |  C7  |  infer
732  |  C8B  |  infer
735  |  C9  |  infer
834  |  CASP1  |  infer
843  |  CASP10  |  infer
23581  |  CASP14  |  infer
835  |  CASP2  |  infer
836  |  CASP3  |  infer
837  |  CASP4  |  infer
838  |  CASP5  |  infer
839  |  CASP6  |  infer
840  |  CASP7  |  infer
841  |  CASP8  |  infer
9994  |  CASP8AP2  |  infer
842  |  CASP9  |  infer
875  |  CBS  |  infer
6347  |  CCL2  |  infer
6352  |  CCL5  |  infer
6355  |  CCL8  |  infer
595  |  CCND1  |  infer
1232  |  CCR3  |  infer
940  |  CD28  |  infer
958  |  CD40  |  infer
4179  |  CD46  |  infer
1604  |  CD55  |  infer
966  |  CD59  |  infer
22918  |  CD93  |  infer
1019  |  CDK4  |  infer
1029  |  CDKN2A  |  infer
1030  |  CDKN2B  |  infer
1071  |  CETP  |  infer
629  |  CFB  |  infer
1675  |  CFD  |  infer
3075  |  CFH  |  infer
3078  |  CFHR1  |  infer
81494  |  CFHR5  |  infer
1147  |  CHUK  |  infer
1191  |  CLU  |  infer
1312  |  COMT  |  infer
1378  |  CR1  |  infer
1380  |  CR2  |  infer
1493  |  CTLA4  |  infer
1524  |  CX3CR1  |  infer
7852  |  CXCR4  |  infer
1535  |  CYBA  |  infer
1584  |  CYP11B1  |  infer
1585  |  CYP11B2  |  infer
1586  |  CYP17A1  |  infer
1588  |  CYP19A1  |  infer
1543  |  CYP1A1  |  infer
1544  |  CYP1A2  |  infer
1545  |  CYP1B1  |  infer
1589  |  CYP21A2  |  infer
1559  |  CYP2C9  |  infer
1571  |  CYP2E1  |  infer
1719  |  DHFR  |  infer
1813  |  DRD2  |  infer
1814  |  DRD3  |  infer
1816  |  DRD5  |  infer
2052  |  EPHX1  |  infer
2053  |  EPHX2  |  infer
2068  |  ERCC2  |  infer
2073  |  ERCC5  |  infer
2099  |  ESR1  |  infer
2100  |  ESR2  |  infer
2208  |  FCER2  |  infer
2212  |  FCGR2A  |  infer
2214  |  FCGR3A  |  infer
2222  |  FDFT1  |  infer
2321  |  FLT1  |  infer
2356  |  FPGS  |  infer
2688  |  GH1  |  infer
2690  |  GHR  |  infer
51738  |  GHRL  |  infer
2876  |  GPX1  |  infer
2879  |  GPX4  |  infer
2944  |  GSTM1  |  infer
2947  |  GSTM3  |  infer
2950  |  GSTP1  |  infer
2952  |  GSTT1  |  infer
3014  |  H2AFX  |  infer
3105  |  HLA-A  |  infer
3106  |  HLA-B  |  infer
3107  |  HLA-C  |  infer
3119  |  HLA-DQB1  |  infer
3123  |  HLA-DRB1  |  infer
3157  |  HMGCS1  |  infer
3158  |  HMGCS2  |  infer
3240  |  HP  |  infer
3292  |  HSD17B1  |  infer
3294  |  HSD17B2  |  infer
3283  |  HSD3B1  |  infer
3284  |  HSD3B2  |  infer
3383  |  ICAM1  |  infer
29851  |  ICOS  |  infer
3458  |  IFNG  |  infer
3479  |  IGF1  |  infer
3480  |  IGF1R  |  infer
3481  |  IGF2  |  infer
3482  |  IGF2R  |  infer
3484  |  IGFBP1  |  infer
3486  |  IGFBP3  |  infer
3551  |  IKBKB  |  infer
3586  |  IL10  |  infer
3603  |  IL16  |  infer
3565  |  IL4  |  infer
3566  |  IL4R  |  infer
3689  |  ITGB2  |  infer
3952  |  LEP  |  infer
3981  |  LIG4  |  infer
3990  |  LIPC  |  infer
4023  |  LPL  |  infer
4049  |  LTA  |  infer
10747  |  MASP2  |  infer
4153  |  MBL2  |  infer
4157  |  MC1R  |  infer
4286  |  MITF  |  infer
4312  |  MMP1  |  infer
4313  |  MMP2  |  infer
4314  |  MMP3  |  infer
4318  |  MMP9  |  infer
4353  |  MPO  |  infer
4436  |  MSH2  |  infer
4524  |  MTHFR  |  infer
10588  |  MTHFS  |  infer
4548  |  MTR  |  infer
4552  |  MTRR  |  infer
9  |  NAT1  |  infer
10  |  NAT2  |  infer
4683  |  NBN  |  infer
4688  |  NCF2  |  infer
4689  |  NCF4  |  infer
8202  |  NCOA3  |  infer
4790  |  NFKB1  |  infer
4792  |  NFKBIA  |  infer
4793  |  NFKBIB  |  infer
64127  |  NOD2  |  infer
4842  |  NOS1  |  infer
4843  |  NOS2  |  infer
4846  |  NOS3  |  infer
4864  |  NPC1  |  infer
10577  |  NPC2  |  infer
4852  |  NPY  |  infer
1728  |  NQO1  |  infer
7376  |  NR1H2  |  infer
10062  |  NR1H3  |  infer
2908  |  NR3C1  |  infer
4948  |  OCA2  |  infer
4968  |  OGG1  |  infer
56288  |  PARD3  |  infer
8505  |  PARG  |  infer
142  |  PARP1  |  infer
23590  |  PDSS1  |  infer
5241  |  PGR  |  infer
5443  |  POMC  |  infer
5617  |  PRL  |  infer
5618  |  PRLR  |  infer
5742  |  PTGS1  |  infer
5743  |  PTGS2  |  infer
5770  |  PTPN1  |  infer
5879  |  RAC1  |  infer
5880  |  RAC2  |  infer
10111  |  RAD50  |  infer
5896  |  RAG1  |  infer
5966  |  REL  |  infer
8737  |  RIPK1  |  infer
866  |  SERPINA6  |  infer
710  |  SERPING1  |  infer
6462  |  SHBG  |  infer
6470  |  SHMT1  |  infer
6472  |  SHMT2  |  infer
23411  |  SIRT1  |  infer
9963  |  SLC23A1  |  infer
9962  |  SLC23A2  |  infer
6531  |  SLC6A3  |  infer
9021  |  SOCS3  |  infer
6647  |  SOD1  |  infer
6648  |  SOD2  |  infer
6649  |  SOD3  |  infer
6715  |  SRD5A1  |  infer
6770  |  STAR  |  infer
83930  |  STARD3NL  |  infer
6774  |  STAT3  |  infer
6778  |  STAT6  |  infer
7076  |  TIMP1  |  infer
7078  |  TIMP3  |  infer
7096  |  TLR1  |  infer
81793  |  TLR10  |  infer
7097  |  TLR2  |  infer
7099  |  TLR4  |  infer
10333  |  TLR6  |  infer
7124  |  TNF  |  infer
7132  |  TNFRSF1A  |  infer
7133  |  TNFRSF1B  |  infer
944  |  TNFSF8  |  infer
8717  |  TRADD  |  infer
7186  |  TRAF2  |  infer
7188  |  TRAF5  |  infer
222642  |  TSPO2  |  infer
7298  |  TYMS  |  infer
7299  |  TYR  |  infer
7412  |  VCAM1  |  infer
7421  |  VDR  |  infer
7422  |  VEGFA  |  infer
7486  |  WRN  |  infer
7515  |  XRCC1  |  infer
7517  |  XRCC3  |  infer
847  |  CAT  |  infer
4862  |  NPAS2  |  infer
5444  |  PON1  |  infer
3567  |  IL5  |  infer
3569  |  IL6  |  infer
5468  |  PPARG  |  infer
3552  |  IL1A  |  infer
3553  |  IL1B  |  infer
3557  |  IL1RN  |  infer
3558  |  IL2  |  infer
4609  |  MYC  |  infer
6573  |  SLC19A1  |  infer
Text Mined Gene(Waiting for update.)
Locus(Waiting for update.)
Disease ID 691
Disease lymphoma, non-hodgkin
Integrated Phenotype
HPO | Name(Total Integrated Phenotypes:1)
HP:0002665  |  Lymphoma
Text Mined Phenotype
HPO | Name | Sentences' Count(Total Phenotypes:66)
HP:0002665  |  Lymphoma  |  32
HP:0002664  |  Neoplasia  |  15
HP:0012191  |  B-cell lymphoma  |  6
HP:0001909  |  Leukemia  |  5
HP:0002721  |  Immunodeficiency  |  5
HP:0002352  |  Leukoencephalopathy  |  4
HP:0002960  |  Autoimmune condition  |  4
HP:0002202  |  Pleural effusion  |  3
HP:0002090  |  Pneumonia  |  3
HP:0000718  |  Aggressive behaviour  |  3
HP:0001875  |  Neutropenia  |  3
HP:0030069  |  Primary central nervous system lymphoma  |  2
HP:0002633  |  Vasculitis  |  2
HP:0012115  |  Liver inflammation  |  2
HP:0030080  |  Burkitt lymphoma  |  2
HP:0002716  |  Lymph node hyperplasia  |  2
HP:0100778  |  Cryoglobulinemia  |  2
HP:0001369  |  Arthritis  |  2
HP:0000099  |  Glomerular nephritis  |  1
HP:0001890  |  Autoimmune hemolytic anemia  |  1
HP:0100727  |  Histiocytosis  |  1
HP:0008940  |  Generalized lymphadenopathy  |  1
HP:0002383  |  Encephalitis  |  1
HP:0030731  |  Carcinoma  |  1
HP:0100820  |  Glomerulopathy  |  1
HP:0100543  |  Cognitive deficits  |  1
HP:0100726  |  Kaposi's sarcoma  |  1
HP:0012054  |  Choroidal melanoma  |  1
HP:0002861  |  Melanoma  |  1
HP:0006530  |  Interstitial lung disease  |  1
HP:0009733  |  Glioma  |  1
HP:0002013  |  Emesis  |  1
HP:0001873  |  Low platelet count  |  1
HP:0012324  |  Myeloid leukemia  |  1
HP:0100242  |  Sarcoma  |  1
HP:0002576  |  Intussusception  |  1
HP:0002017  |  Nausea and vomiting  |  1
HP:0012034  |  Liposarcoma  |  1
HP:0002885  |  Medulloblastoma  |  1
HP:0009027  |  Foot drop  |  1
HP:0001878  |  Haemolytic anaemia  |  1
HP:0002018  |  Nausea  |  1
HP:0005200  |  Retroperitoneal fibrosis  |  1
HP:0006775  |  Multiple myeloma  |  1
HP:0001271  |  Polyneuropathy  |  1
HP:0012189  |  Hodgkin disease  |  1
HP:0001903  |  Anemia  |  1
HP:0001370  |  Rheumatoid arthritis  |  1
HP:0012190  |  T cell lymphoma  |  1
HP:0000100  |  Nephrosis  |  1
HP:0005506  |  Chronic myeloid leukemia  |  1
HP:0001677  |  Coronary artery disease  |  1
HP:0012378  |  Fatigue  |  1
HP:0010280  |  Stomatitis  |  1
HP:0005584  |  Renal cell carcinoma  |  1
HP:0002608  |  Celiac disease  |  1
HP:0001397  |  Hepatic steatosis  |  1
HP:0012578  |  Membranous glomerulonephritis  |  1
HP:0010310  |  Chylothorax  |  1
HP:0001824  |  Weight loss  |  1
HP:0002176  |  Spinal cord compression  |  1
HP:0002398  |  Anterior horn cell loss  |  1
HP:0002488  |  Acute leukemias  |  1
HP:0030159  |  Cervical polyp  |  1
HP:0001744  |  Splenomegaly  |  1
HP:0006721  |  Acute lymphocytic leukemia  |  1
Disease ID 691
Disease lymphoma, non-hodgkin
Manually Symptom(Waiting for update.)
Text Mined Symptom
UMLS | Name | Sentences' Count(Total Symptoms:12)
C0042769  |  virus infection  |  6
C0032227  |  pleural effusion  |  3
C0746883  |  febrile neutropenia  |  3
C0021051  |  immunodeficiency  |  3
C0007114  |  skin cancer  |  2
C0037140  |  b virus infection  |  2
C0042384  |  vasculitis  |  2
C0008733  |  chylothorax  |  1
C0026848  |  muscle disorders  |  1
C0037926  |  spinal cord compression  |  1
C1112570  |  paraneoplastic pemphigus  |  1
C0152025  |  polyneuropathy  |  1
Manually Genotype(Total Text Mining Genotypes:0)
(Waiting for update.)
All Snps(Total Genotypes:180)
snpId pubmedId geneId geneSymbol diseaseId sourceId sentence score Year geneSymbol_dbSNP CHROMOSOME POS REF ALT
rs1041163195336853596IL13umls:C0024305BeFreeInterleukin 13 (IL13) Ex4+98A>G SNP (rs20541) was associated with decreased NHL risk (OR(AG/AA) = 0.62,95% CI = 0.44-0.87, p = 0.006), as was vascular cell adhesion molecule-1, VCAM1 Ex9+149G>A SNP (rs1041163) (OR(CT) = 0.77, 95% CI = 0.54-1.10, OR(CC) = 0.35, 95% CI = 0.16-0.76, p-trend = 0.007).0.0008143262009VCAM11100718269TC
rs1041163195336857412VCAM1umls:C0024305BeFreeInterleukin 13 (IL13) Ex4+98A>G SNP (rs20541) was associated with decreased NHL risk (OR(AG/AA) = 0.62,95% CI = 0.44-0.87, p = 0.006), as was vascular cell adhesion molecule-1, VCAM1 Ex9+149G>A SNP (rs1041163) (OR(CT) = 0.77, 95% CI = 0.54-1.10, OR(CC) = 0.35, 95% CI = 0.16-0.76, p-trend = 0.007).0.0026384742009VCAM11100718269TC
rs1042522252034427157TP53umls:C0024305BeFreeThe functional TP53 rs1042522 and MDM4 rs4245739 genetic variants contribute to Non-Hodgkin lymphoma risk.0.1325398652014TP53177676154GT,C
rs1042522252034424194MDM4umls:C0024305BeFreeThe functional TP53 rs1042522 and MDM4 rs4245739 genetic variants contribute to Non-Hodgkin lymphoma risk.0.0002714422014TP53177676154GT,C
rs104894176NA5551PRF1umls:C0024305CLINVARNA0.24NAPRF11070598599CT
rs1048943198991301543CYP1A1umls:C0024305BeFreeOur data provide evidence that the GSTP1 rs1695 and the CYP1A1 rs1048943 genotypes affect the risk of NHL in Korea.0.0192076982009CYP1A11574720644TG,C,A
rs1048943198991302950GSTP1umls:C0024305BeFreeOur data provide evidence that the GSTP1 rs1695 and the CYP1A1 rs1048943 genotypes affect the risk of NHL in Korea.0.0232892572009CYP1A11574720644TG,C,A
rs104921617071630841CASP8umls:C0024305BeFreeWe investigated five single nucleotide polymorphisms in four key caspase genes, CASP3 [Ex8-280C>A (rs6948) and Ex8+567T>C (rs1049216)], CASP8 Ex14-271A>T (rs13113), CASP9 Ex5+32G>A (rs1052576) and CASP10 Ex3-171A>G (rs3900115) to determine whether they alter risk for non-Hodgkin lymphoma (NHL) in a population-based case-control study of women in Connecticut (461 cases and 535 controls).0.007643982007CASP34184628935AG
rs1051266151989536573SLC19A1umls:C0024305BeFreeThe polymorphisms examined and haplotypes generated included thymidylate synthase (TYMS 28-bp triple repeat [3R]-->double repeat [2R], 1494del6, IVS6 -68C>T, 1122A>G, and 1053C>T); 5,10-methylenetetrahydrofolate reductase (MTHFR 677C>T and 1298A>C); serine hydroxymethyltransferase (SHMT1 C1420T); reduced folate carrier (RFC G80A); and methionine synthase (MTR A2756G), making the present study the largest and most comprehensive to date to evaluate associations between genetic polymorphisms in folatemetabolizing genes and NHL risk.0.0050055062004SLC19A12145537880TC
rs1051266151989536470SHMT1umls:C0024305BeFreeThe polymorphisms examined and haplotypes generated included thymidylate synthase (TYMS 28-bp triple repeat [3R]-->double repeat [2R], 1494del6, IVS6 -68C>T, 1122A>G, and 1053C>T); 5,10-methylenetetrahydrofolate reductase (MTHFR 677C>T and 1298A>C); serine hydroxymethyltransferase (SHMT1 C1420T); reduced folate carrier (RFC G80A); and methionine synthase (MTR A2756G), making the present study the largest and most comprehensive to date to evaluate associations between genetic polymorphisms in folatemetabolizing genes and NHL risk.0.1279154222004SLC19A12145537880TC
rs105257617071630841CASP8umls:C0024305BeFreeWe investigated five single nucleotide polymorphisms in four key caspase genes, CASP3 [Ex8-280C>A (rs6948) and Ex8+567T>C (rs1049216)], CASP8 Ex14-271A>T (rs13113), CASP9 Ex5+32G>A (rs1052576) and CASP10 Ex3-171A>G (rs3900115) to determine whether they alter risk for non-Hodgkin lymphoma (NHL) in a population-based case-control study of women in Connecticut (461 cases and 535 controls).0.007643982007CASP9115506048TC
rs109939942459879654790TET2umls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0005428842014MSMB1046046326AG
rs10993994245987964046LSP1umls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0029099162014MSMB1046046326AG
rs10993994245987964477MSMBumls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0002714422014MSMB1046046326AG
rs10993994245987964439MSH5umls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0002714422014MSMB1046046326AG
rs10993994245987967015TERTumls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0002714422014MSMB1046046326AG
rs11277172391301110840ALDH1L1umls:C0024305BeFreeA significantly reduced risk of NHL was associated with the homozygous TT genotype in CBS (rs234706, Ex9+33C>T) (OR = 0.51, 95 % CI 0.31-0.84), the homozygous CC genotype in MBD2 (rs603097, -2176C>T) (OR = 0.37, 95 % CI 0.17-0.79), the heterozygote AG genotype in FTHFD (rs1127717, Ex21+31A>G) (OR = 0.73, 95 % CI 0.55-0.98), and a borderline significantly reduced risk of NHL was observed for the homozygous CC genotype in MTRR (rs161870, Ex5+136T>C) (OR = 0.23, 95 % CI 0.05-1.04).0.005548392013ALDH1L1;ALDH1L1-AS13126107216TC
rs1127717239130118932MBD2umls:C0024305BeFreeA significantly reduced risk of NHL was associated with the homozygous TT genotype in CBS (rs234706, Ex9+33C>T) (OR = 0.51, 95 % CI 0.31-0.84), the homozygous CC genotype in MBD2 (rs603097, -2176C>T) (OR = 0.37, 95 % CI 0.17-0.79), the heterozygote AG genotype in FTHFD (rs1127717, Ex21+31A>G) (OR = 0.73, 95 % CI 0.55-0.98), and a borderline significantly reduced risk of NHL was observed for the homozygous CC genotype in MTRR (rs161870, Ex5+136T>C) (OR = 0.23, 95 % CI 0.05-1.04).0.0002714422013ALDH1L1;ALDH1L1-AS13126107216TC
rs1127717239130114552MTRRumls:C0024305BeFreeA significantly reduced risk of NHL was associated with the homozygous TT genotype in CBS (rs234706, Ex9+33C>T) (OR = 0.51, 95 % CI 0.31-0.84), the homozygous CC genotype in MBD2 (rs603097, -2176C>T) (OR = 0.37, 95 % CI 0.17-0.79), the heterozygote AG genotype in FTHFD (rs1127717, Ex21+31A>G) (OR = 0.73, 95 % CI 0.55-0.98), and a borderline significantly reduced risk of NHL was observed for the homozygous CC genotype in MTRR (rs161870, Ex5+136T>C) (OR = 0.23, 95 % CI 0.05-1.04).0.005548392013ALDH1L1;ALDH1L1-AS13126107216TC
rs113641020196871142PARP1umls:C0024305BeFreePARP-1 Val762Ala polymorphism is associated with reduced risk of non-Hodgkin lymphoma in Korean males.0.0050055062010PARP11226367601AG
rs114216685NA25788RAD54Bumls:C0024305CLINVARNA0.12NARAD54B894391640TC
rs121908689NA8438RAD54Lumls:C0024305CLINVARNA0.242367032NARAD54L146272758TA
rs121909775NA843CASP10umls:C0024305CLINVARNA0.369825446NACASP102201205929CA,T
rs121912659NA7157TP53umls:C0024305CLINVARNA0.132539865NATP53177673554CA
rs121913338NA673BRAFumls:C0024305CLINVARNA0.242367032NABRAF7140753354TC,A
rs121913355NA673BRAFumls:C0024305CLINVARNA0.242367032NABRAF7140781602CT,G,A
rs121913357NA673BRAFumls:C0024305CLINVARNA0.242367032NABRAF7140781603CT,G,A
rs121913499209468813417IDH1umls:C0024305BeFreeExcept for one non-Hodgkin lymphoma (NHL) patient harboring IDH1 mutation p.R132C, all IDH1 and IDH2 missense mutations were observed in patients with AML.0.0026384742010IDH12208248389GT,A
rs12203592193966353056HCL1umls:C0024305BeFreeAnalysis of joint effects between eye and hair color with the IRF4 rs12203592 SNP did not reveal statistically significant p-interactions although NHL risk did decline with lighter hair color and presence of the variant IRF4 rs12203592 allele, compared to those without a variant allele and with black/brown hair color.0.0002714422009IRF46396321CT
rs12211228193906832194FASNumls:C0024305BeFreeAccordingly, the single most significant SNPs associated with NHL were FAS rs4934436 (p-trend = 0.0024), IRF4 rs12211228 (p-trend = 0.0026), TNFSF13B rs2582869 (p-trend = 0.0055), TANK rs1921310 (p-trend = 0.0025), TNFSF7 rs16994592 (p-trend = 0.0024), and TNFRSF13C rs6002551 (p-trend = 0.0074).0.0005428842009IRF46408833GC
rs12711521230552024155MBPumls:C0024305BeFreeA SNP-based analysis showed that MBP rs8094402 was associated with decreased risks of overall NHL (allele risk OR = 0.72, P-trend = 0.0018), DLBCL (allele risk OR = 0.72, P-trend = 0.036), and FL (allele risk OR = 0.67, P-trend = 0.021), while MASP2 rs12711521 was associated with a decreased risk of DLBCL (allele risk OR = 0.57, P-trend = 0.0042).0.0002714422013MASP2111030859CA
rs127115212305520210747MASP2umls:C0024305BeFreeA SNP-based analysis showed that MBP rs8094402 was associated with decreased risks of overall NHL (allele risk OR = 0.72, P-trend = 0.0018), DLBCL (allele risk OR = 0.72, P-trend = 0.036), and FL (allele risk OR = 0.67, P-trend = 0.021), while MASP2 rs12711521 was associated with a decreased risk of DLBCL (allele risk OR = 0.57, P-trend = 0.0042).0.0026384742013MASP2111030859CA
rs1311317071630841CASP8umls:C0024305BeFreeWe investigated five single nucleotide polymorphisms in four key caspase genes, CASP3 [Ex8-280C>A (rs6948) and Ex8+567T>C (rs1049216)], CASP8 Ex14-271A>T (rs13113), CASP9 Ex5+32G>A (rs1052576) and CASP10 Ex3-171A>G (rs3900115) to determine whether they alter risk for non-Hodgkin lymphoma (NHL) in a population-based case-control study of women in Connecticut (461 cases and 535 controls).0.007643982007CASP82201287439TA
rs13178127208130007518XRCC4umls:C0024305BeFreeFive SNPs (BLM rs441399, RAD50 rs2237060, FAM82A2 rs2304583, ERCC3 rs4150506, and XRCC4 rs13178127) were particularly noteworthy because their gene regions were significantly associated with NHL or NHL subtypes (minP ≤ 0·05), or because of high level of statistical significance (P ≤ 0·005) and consistent findings across the three studies.0.0026384742010XRCC4583293613AG
rs13181254222232068ERCC2umls:C0024305BeFreeComprehensive assessment of associations between ERCC2 Lys751Gln/Asp312Asn polymorphisms and risk of non- Hodgkin lymphoma.0.0126494862015ERCC2;KLC31945351661TA,G
rs1318123619945672BRCA1umls:C0024305BeFreeCompared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes.0.0052769482013ERCC2;KLC31945351661TA,G
rs13181236199457515XRCC1umls:C0024305BeFreeCompared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes.0.007643982013ERCC2;KLC31945351661TA,G
rs13181236199452068ERCC2umls:C0024305BeFreeCompared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes.0.0126494862013ERCC2;KLC31945351661TA,G
rs13181236199457486WRNumls:C0024305BeFreeCompared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes.0.005548392013ERCC2;KLC31945351661TA,G
rs1346044251785867486WRNumls:C0024305BeFreeIn addition, a significant interaction with risk of overall NHL was observed between WRN rs1346044 and hair dye use before 1980 (p(interaction) = 0.032).0.005548392014WRN;LOC105379359831167138TC
rs1370619101572990CDC6umls:C0024305BeFreeAssociation analysis between the Cdc6 G1321A polymorphism and the risk for non-Hodgkin lymphoma and hepatocellular carcinoma.0.0026384742009CDC61740300899GA,C
rs1494555209526897124TNFumls:C0024305BeFreeA significant interaction with BMI was only observed for IFNGR2 (rs9808753 P(forinteraction) = .034) and IL7R (rs1494555 P(forinteraction) = .016) for NHL overall; IL7R (rs1494555 P(forinteraction) = .016) and TNF (1799724 P(forinteraction) = .031) for B-cell lymphoma; and IL5 (rs2069812 P(forinteraction) = .034) for T-cell lymphoma.0.0497499412011IL7R535871088GA
rs1618702391301110840ALDH1L1umls:C0024305BeFreeA significantly reduced risk of NHL was associated with the homozygous TT genotype in CBS (rs234706, Ex9+33C>T) (OR = 0.51, 95 % CI 0.31-0.84), the homozygous CC genotype in MBD2 (rs603097, -2176C>T) (OR = 0.37, 95 % CI 0.17-0.79), the heterozygote AG genotype in FTHFD (rs1127717, Ex21+31A>G) (OR = 0.73, 95 % CI 0.55-0.98), and a borderline significantly reduced risk of NHL was observed for the homozygous CC genotype in MTRR (rs161870, Ex5+136T>C) (OR = 0.23, 95 % CI 0.05-1.04).0.005548392013MTRR57878079TC
rs161870239130118932MBD2umls:C0024305BeFreeA significantly reduced risk of NHL was associated with the homozygous TT genotype in CBS (rs234706, Ex9+33C>T) (OR = 0.51, 95 % CI 0.31-0.84), the homozygous CC genotype in MBD2 (rs603097, -2176C>T) (OR = 0.37, 95 % CI 0.17-0.79), the heterozygote AG genotype in FTHFD (rs1127717, Ex21+31A>G) (OR = 0.73, 95 % CI 0.55-0.98), and a borderline significantly reduced risk of NHL was observed for the homozygous CC genotype in MTRR (rs161870, Ex5+136T>C) (OR = 0.23, 95 % CI 0.05-1.04).0.0002714422013MTRR57878079TC
rs161870239130114552MTRRumls:C0024305BeFreeA significantly reduced risk of NHL was associated with the homozygous TT genotype in CBS (rs234706, Ex9+33C>T) (OR = 0.51, 95 % CI 0.31-0.84), the homozygous CC genotype in MBD2 (rs603097, -2176C>T) (OR = 0.37, 95 % CI 0.17-0.79), the heterozygote AG genotype in FTHFD (rs1127717, Ex21+31A>G) (OR = 0.73, 95 % CI 0.55-0.98), and a borderline significantly reduced risk of NHL was observed for the homozygous CC genotype in MTRR (rs161870, Ex5+136T>C) (OR = 0.23, 95 % CI 0.05-1.04).0.005548392013MTRR57878079TC
rs1695227348432944GSTM1umls:C0024305BeFreeRole of polymorphisms of GSTM1, GSTT1 and GSTP1 Ile105Val in Hodgkin and non-Hodgkin lymphoma risk: a Human Genome Epidemiology (HuGE) review.0.020736662013GSTP11167585218AG
rs1695198991302950GSTP1umls:C0024305BeFreeOur data provide evidence that the GSTP1 rs1695 and the CYP1A1 rs1048943 genotypes affect the risk of NHL in Korea.0.0232892572009GSTP11167585218AG
rs1695227348432952GSTT1umls:C0024305BeFreeRole of polymorphisms of GSTM1, GSTT1 and GSTP1 Ile105Val in Hodgkin and non-Hodgkin lymphoma risk: a Human Genome Epidemiology (HuGE) review.0.0174694262013GSTP11167585218AG
rs1695198991301543CYP1A1umls:C0024305BeFreeOur data provide evidence that the GSTP1 rs1695 and the CYP1A1 rs1048943 genotypes affect the risk of NHL in Korea.0.0192076982009GSTP11167585218AG
rs1695227348432950GSTP1umls:C0024305BeFreeRole of polymorphisms of GSTM1, GSTT1 and GSTP1 Ile105Val in Hodgkin and non-Hodgkin lymphoma risk: a Human Genome Epidemiology (HuGE) review.0.0232892572013GSTP11167585218AG
rs16994592193906832194FASNumls:C0024305BeFreeAccordingly, the single most significant SNPs associated with NHL were FAS rs4934436 (p-trend = 0.0024), IRF4 rs12211228 (p-trend = 0.0026), TNFSF13B rs2582869 (p-trend = 0.0055), TANK rs1921310 (p-trend = 0.0025), TNFSF7 rs16994592 (p-trend = 0.0024), and TNFRSF13C rs6002551 (p-trend = 0.0074).0.0005428842009CD70196586487TC
rs178588219414860842CASP9umls:C0024305BeFreeSNP-based analysis showed that CASP8 rs6736233 (odds ratio (OR) (CG) = 1.21; OR(CC) = 2.13; P trend = .011); CASP9 rs4661636 (OR(CT) = 0.89; OR(TT) = 0.77; P trend = .011); and CASP1 rs1785882 (OR(AT) = 1.12; OR(AA) = 1.30; P trend = .0054) were significantly associated with NHL risk and consistent across studies.0.007643982009NA11105052348AT
rs178588219414860834CASP1umls:C0024305BeFreeSNP-based analysis showed that CASP8 rs6736233 (odds ratio (OR) (CG) = 1.21; OR(CC) = 2.13; P trend = .011); CASP9 rs4661636 (OR(CT) = 0.89; OR(TT) = 0.77; P trend = .011); and CASP1 rs1785882 (OR(AT) = 1.12; OR(AA) = 1.30; P trend = .0054) were significantly associated with NHL risk and consistent across studies.0.0050055062009NA11105052348AT
rs1799724170186377124TNFumls:C0024305BeFreeA haplotype comprising SNPs in two proinflammatory cytokines, tumor necrosis factor-alpha and lymphotoxin-alpha (rs1800629, rs361525, rs1799724, rs909253, and rs2239704), increased non-Hodgkin lymphoma risk overall (OR, 1.31; 95% CI, 1.06-1.63; P = 0.01) and notably for diffuse large B cell (OR, 1.64; 95% CI, 1.23-2.19; P = 0.0007).0.0497499412006LTA;TNF631574705CT
rs1799724170186374049LTAumls:C0024305BeFreeA haplotype comprising SNPs in two proinflammatory cytokines, tumor necrosis factor-alpha and lymphotoxin-alpha (rs1800629, rs361525, rs1799724, rs909253, and rs2239704), increased non-Hodgkin lymphoma risk overall (OR, 1.31; 95% CI, 1.06-1.63; P = 0.01) and notably for diffuse large B cell (OR, 1.64; 95% CI, 1.23-2.19; P = 0.0007).0.0259277312006LTA;TNF631574705CT
rs1799782236199452068ERCC2umls:C0024305BeFreeCompared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes.0.0126494862013XRCC11943553422GA
rs179978223619945672BRCA1umls:C0024305BeFreeCompared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes.0.0052769482013XRCC11943553422GA
rs1799782236199457486WRNumls:C0024305BeFreeCompared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes.0.005548392013XRCC11943553422GA
rs1799782236199457515XRCC1umls:C0024305BeFreeCompared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes.0.007643982013XRCC11943553422GA
rs1799793254222232068ERCC2umls:C0024305BeFreeComprehensive assessment of associations between ERCC2 Lys751Gln/Asp312Asn polymorphisms and risk of non- Hodgkin lymphoma.0.0126494862015ERCC21945364001CT
rs1800629170186374049LTAumls:C0024305BeFreeA haplotype comprising SNPs in two proinflammatory cytokines, tumor necrosis factor-alpha and lymphotoxin-alpha (rs1800629, rs361525, rs1799724, rs909253, and rs2239704), increased non-Hodgkin lymphoma risk overall (OR, 1.31; 95% CI, 1.06-1.63; P = 0.01) and notably for diffuse large B cell (OR, 1.64; 95% CI, 1.23-2.19; P = 0.0007).0.0259277312006TNF631575254GA
rs1800629196545544049LTAumls:C0024305BeFreeTwo single nucleotide polymorphisms (SNPs) in adjacent genes, lymphotoxin alpha (LTA +252G, rs909253 A>G) and tumor necrosis factor (TNF -308A, rs1800629 G>A), form the G-A haplotype repeatedly associated with increased risk of non-Hodgkin lymphoma (NHL) in individuals uninfected with HIV-1.0.0259277312009TNF631575254GA
rs1800629200876447124TNFumls:C0024305BeFreeTNF rs1800629 was associated with risk of NHL (OR 1.53, 95% confidence interval, CI, 1.06-2.19 for minor allele homozygosity), T-cell lymphoma (OR 2.54, CI 1.27-5.09) and mantle cell lymphoma (OR 2.84, CI 1.38-5.87).0.0497499412010TNF631575254GA
rs1800629196545547124TNFumls:C0024305BeFreeTwo single nucleotide polymorphisms (SNPs) in adjacent genes, lymphotoxin alpha (LTA +252G, rs909253 A>G) and tumor necrosis factor (TNF -308A, rs1800629 G>A), form the G-A haplotype repeatedly associated with increased risk of non-Hodgkin lymphoma (NHL) in individuals uninfected with HIV-1.0.0497499412009TNF631575254GA
rs1800629170186377124TNFumls:C0024305BeFreeA haplotype comprising SNPs in two proinflammatory cytokines, tumor necrosis factor-alpha and lymphotoxin-alpha (rs1800629, rs361525, rs1799724, rs909253, and rs2239704), increased non-Hodgkin lymphoma risk overall (OR, 1.31; 95% CI, 1.06-1.63; P = 0.01) and notably for diffuse large B cell (OR, 1.64; 95% CI, 1.23-2.19; P = 0.0007).0.0497499412006TNF631575254GA
rs1800795255649593569IL6umls:C0024305BeFreeGiven the importance of understanding the genetic variations involved in the pathogenesis of non-Hodgkin's lymphoma (NHL), this pilot study was designed to investigate the impact of CD38 (184C/G; rs6449182) and IL-6 (-174 G/C; rs1800795) gene polymorphism on susceptibility of Egyptians to diffuse large B cell lymphoma (DLBCL); major types of NHL.0.0160025962016IL6;LOC541472722727026CG
rs1800890195730803586IL10umls:C0024305BeFreeWe confirmed previous studies showing a polymorphism in the IL10 promoter (rs1800890/-3575T>A) to be associated with non-Hodgkin lymphoma, as this allele was found to be associated with both CLL and WM.0.0483789192009IL101206776020AT
rs1801181239130116470SHMT1umls:C0024305BeFreeA borderline significantly increased risk of NHL was also observed for CBS (rs1801181, Ex13+41C>T), FTHFD (rs2305230, Ex10-40G>T), SHMT1 (rs1979277, Ex12+138C>T), and SHMT1 (rs1979276, Ex12+236T>C), and these associations appeared to be contingent on dietary nutrient intakes.0.1279154222013CBS2143060506GA
rs180118123913011102724560LOC102724560umls:C0024305BeFreeA borderline significantly increased risk of NHL was also observed for CBS (rs1801181, Ex13+41C>T), FTHFD (rs2305230, Ex10-40G>T), SHMT1 (rs1979277, Ex12+138C>T), and SHMT1 (rs1979276, Ex12+236T>C), and these associations appeared to be contingent on dietary nutrient intakes.0.0008143262013CBS2143060506GA
rs1801195236199457486WRNumls:C0024305BeFreeCompared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes.0.005548392013WRN831141764GT
rs1801195236199452068ERCC2umls:C0024305BeFreeCompared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes.0.0126494862013WRN831141764GT
rs180119523619945672BRCA1umls:C0024305BeFreeCompared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes.0.0052769482013WRN831141764GT
rs1801195236199457515XRCC1umls:C0024305BeFreeCompared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes.0.007643982013WRN831141764GT
rs1801274170186372209FCGR1Aumls:C0024305BeFreeA functional nonsynonymous SNP in the innate immune gene Fc gamma receptor 2A (FCGR2A; rs1801274) was also associated with non-Hodgkin lymphoma; AG and AA genotypes were associated with a 1.26-fold (95% CI, 1.01-1.56) and 1.41-fold (95% CI, 1.10-1.81) increased risk, respectively (P(trend) = 0.006).0.0005428842006FCGR2A1161509955AG
rs1801274170186372212FCGR2Aumls:C0024305BeFreeA functional nonsynonymous SNP in the innate immune gene Fc gamma receptor 2A (FCGR2A; rs1801274) was also associated with non-Hodgkin lymphoma; AG and AA genotypes were associated with a 1.26-fold (95% CI, 1.01-1.56) and 1.41-fold (95% CI, 1.10-1.81) increased risk, respectively (P(trend) = 0.006).0.010368332006FCGR2A1161509955AG
rs1805087151989536470SHMT1umls:C0024305BeFreeThe polymorphisms examined and haplotypes generated included thymidylate synthase (TYMS 28-bp triple repeat [3R]-->double repeat [2R], 1494del6, IVS6 -68C>T, 1122A>G, and 1053C>T); 5,10-methylenetetrahydrofolate reductase (MTHFR 677C>T and 1298A>C); serine hydroxymethyltransferase (SHMT1 C1420T); reduced folate carrier (RFC G80A); and methionine synthase (MTR A2756G), making the present study the largest and most comprehensive to date to evaluate associations between genetic polymorphisms in folatemetabolizing genes and NHL risk.0.1279154222004MTR1236885200AG
rs1805087151989536573SLC19A1umls:C0024305BeFreeThe polymorphisms examined and haplotypes generated included thymidylate synthase (TYMS 28-bp triple repeat [3R]-->double repeat [2R], 1494del6, IVS6 -68C>T, 1122A>G, and 1053C>T); 5,10-methylenetetrahydrofolate reductase (MTHFR 677C>T and 1298A>C); serine hydroxymethyltransferase (SHMT1 C1420T); reduced folate carrier (RFC G80A); and methionine synthase (MTR A2756G), making the present study the largest and most comprehensive to date to evaluate associations between genetic polymorphisms in folatemetabolizing genes and NHL risk.0.0050055062004MTR1236885200AG
rs1921310193906832194FASNumls:C0024305BeFreeAccordingly, the single most significant SNPs associated with NHL were FAS rs4934436 (p-trend = 0.0024), IRF4 rs12211228 (p-trend = 0.0026), TNFSF13B rs2582869 (p-trend = 0.0055), TANK rs1921310 (p-trend = 0.0025), TNFSF7 rs16994592 (p-trend = 0.0024), and TNFRSF13C rs6002551 (p-trend = 0.0074).0.0005428842009TANK2161192690AG
rs1979276239130116470SHMT1umls:C0024305BeFreeA borderline significantly increased risk of NHL was also observed for CBS (rs1801181, Ex13+41C>T), FTHFD (rs2305230, Ex10-40G>T), SHMT1 (rs1979277, Ex12+138C>T), and SHMT1 (rs1979276, Ex12+236T>C), and these associations appeared to be contingent on dietary nutrient intakes.0.1279154222013SHMT11718328684GA
rs197927623913011102724560LOC102724560umls:C0024305BeFreeA borderline significantly increased risk of NHL was also observed for CBS (rs1801181, Ex13+41C>T), FTHFD (rs2305230, Ex10-40G>T), SHMT1 (rs1979277, Ex12+138C>T), and SHMT1 (rs1979276, Ex12+236T>C), and these associations appeared to be contingent on dietary nutrient intakes.0.0008143262013SHMT11718328684GA
rs1979277151989536470SHMT1umls:C0024305BeFreeThe polymorphisms examined and haplotypes generated included thymidylate synthase (TYMS 28-bp triple repeat [3R]-->double repeat [2R], 1494del6, IVS6 -68C>T, 1122A>G, and 1053C>T); 5,10-methylenetetrahydrofolate reductase (MTHFR 677C>T and 1298A>C); serine hydroxymethyltransferase (SHMT1 C1420T); reduced folate carrier (RFC G80A); and methionine synthase (MTR A2756G), making the present study the largest and most comprehensive to date to evaluate associations between genetic polymorphisms in folatemetabolizing genes and NHL risk.0.1279154222004SHMT11718328782GA
rs1979277151989536573SLC19A1umls:C0024305BeFreeThe polymorphisms examined and haplotypes generated included thymidylate synthase (TYMS 28-bp triple repeat [3R]-->double repeat [2R], 1494del6, IVS6 -68C>T, 1122A>G, and 1053C>T); 5,10-methylenetetrahydrofolate reductase (MTHFR 677C>T and 1298A>C); serine hydroxymethyltransferase (SHMT1 C1420T); reduced folate carrier (RFC G80A); and methionine synthase (MTR A2756G), making the present study the largest and most comprehensive to date to evaluate associations between genetic polymorphisms in folatemetabolizing genes and NHL risk.0.0050055062004SHMT11718328782GA
rs197927723913011102724560LOC102724560umls:C0024305BeFreeA borderline significantly increased risk of NHL was also observed for CBS (rs1801181, Ex13+41C>T), FTHFD (rs2305230, Ex10-40G>T), SHMT1 (rs1979277, Ex12+138C>T), and SHMT1 (rs1979276, Ex12+236T>C), and these associations appeared to be contingent on dietary nutrient intakes.0.0008143262013SHMT11718328782GA
rs1979277239130116470SHMT1umls:C0024305BeFreeA borderline significantly increased risk of NHL was also observed for CBS (rs1801181, Ex13+41C>T), FTHFD (rs2305230, Ex10-40G>T), SHMT1 (rs1979277, Ex12+138C>T), and SHMT1 (rs1979276, Ex12+236T>C), and these associations appeared to be contingent on dietary nutrient intakes.0.1279154222013SHMT11718328782GA
rs201765376151989536573SLC19A1umls:C0024305BeFreeThe polymorphisms examined and haplotypes generated included thymidylate synthase (TYMS 28-bp triple repeat [3R]-->double repeat [2R], 1494del6, IVS6 -68C>T, 1122A>G, and 1053C>T); 5,10-methylenetetrahydrofolate reductase (MTHFR 677C>T and 1298A>C); serine hydroxymethyltransferase (SHMT1 C1420T); reduced folate carrier (RFC G80A); and methionine synthase (MTR A2756G), making the present study the largest and most comprehensive to date to evaluate associations between genetic polymorphisms in folatemetabolizing genes and NHL risk.0.0050055062004MTR1236838504CT
rs201765376151989536470SHMT1umls:C0024305BeFreeThe polymorphisms examined and haplotypes generated included thymidylate synthase (TYMS 28-bp triple repeat [3R]-->double repeat [2R], 1494del6, IVS6 -68C>T, 1122A>G, and 1053C>T); 5,10-methylenetetrahydrofolate reductase (MTHFR 677C>T and 1298A>C); serine hydroxymethyltransferase (SHMT1 C1420T); reduced folate carrier (RFC G80A); and methionine synthase (MTR A2756G), making the present study the largest and most comprehensive to date to evaluate associations between genetic polymorphisms in folatemetabolizing genes and NHL risk.0.1279154222004MTR1236838504CT
rs20541195336857412VCAM1umls:C0024305BeFreeInterleukin 13 (IL13) Ex4+98A>G SNP (rs20541) was associated with decreased NHL risk (OR(AG/AA) = 0.62,95% CI = 0.44-0.87, p = 0.006), as was vascular cell adhesion molecule-1, VCAM1 Ex9+149G>A SNP (rs1041163) (OR(CT) = 0.77, 95% CI = 0.54-1.10, OR(CC) = 0.35, 95% CI = 0.16-0.76, p-trend = 0.007).0.0026384742009IL135132660272AG
rs20541195336853596IL13umls:C0024305BeFreeInterleukin 13 (IL13) Ex4+98A>G SNP (rs20541) was associated with decreased NHL risk (OR(AG/AA) = 0.62,95% CI = 0.44-0.87, p = 0.006), as was vascular cell adhesion molecule-1, VCAM1 Ex9+149G>A SNP (rs1041163) (OR(CT) = 0.77, 95% CI = 0.54-1.10, OR(CC) = 0.35, 95% CI = 0.16-0.76, p-trend = 0.007).0.0008143262009IL135132660272AG
rs2069812209526897124TNFumls:C0024305BeFreeA significant interaction with BMI was only observed for IFNGR2 (rs9808753 P(forinteraction) = .034) and IL7R (rs1494555 P(forinteraction) = .016) for NHL overall; IL7R (rs1494555 P(forinteraction) = .016) and TNF (1799724 P(forinteraction) = .031) for B-cell lymphoma; and IL5 (rs2069812 P(forinteraction) = .034) for T-cell lymphoma.0.0497499412011IL55132544224AG
rs2237060208130007518XRCC4umls:C0024305BeFreeFive SNPs (BLM rs441399, RAD50 rs2237060, FAM82A2 rs2304583, ERCC3 rs4150506, and XRCC4 rs13178127) were particularly noteworthy because their gene regions were significantly associated with NHL or NHL subtypes (minP ≤ 0·05), or because of high level of statistical significance (P ≤ 0·005) and consistent findings across the three studies.0.0026384742010RAD50;LOC1019277615132635193TG
rs2239704170186374049LTAumls:C0024305BeFreeA haplotype comprising SNPs in two proinflammatory cytokines, tumor necrosis factor-alpha and lymphotoxin-alpha (rs1800629, rs361525, rs1799724, rs909253, and rs2239704), increased non-Hodgkin lymphoma risk overall (OR, 1.31; 95% CI, 1.06-1.63; P = 0.01) and notably for diffuse large B cell (OR, 1.64; 95% CI, 1.23-2.19; P = 0.0007).0.0259277312006LTA;LOC100287329631572364AC
rs2239704170186377124TNFumls:C0024305BeFreeA haplotype comprising SNPs in two proinflammatory cytokines, tumor necrosis factor-alpha and lymphotoxin-alpha (rs1800629, rs361525, rs1799724, rs909253, and rs2239704), increased non-Hodgkin lymphoma risk overall (OR, 1.31; 95% CI, 1.06-1.63; P = 0.01) and notably for diffuse large B cell (OR, 1.64; 95% CI, 1.23-2.19; P = 0.0007).0.0497499412006LTA;LOC100287329631572364AC
rs2297518165432474843NOS2umls:C0024305BeFreeSpecifically, for nitric oxide synthase (NOS2A Ser608Leu, rs2297518) Leu/Leu homozygotes, there was a 2-fold risk increase for NHL (OR=2.2, 95% CI=1.1-4.4) (referent=Ser/Ser and Ser/Leu).0.0052769482006NOS21727769571GA
rs2304583208130007518XRCC4umls:C0024305BeFreeFive SNPs (BLM rs441399, RAD50 rs2237060, FAM82A2 rs2304583, ERCC3 rs4150506, and XRCC4 rs13178127) were particularly noteworthy because their gene regions were significantly associated with NHL or NHL subtypes (minP ≤ 0·05), or because of high level of statistical significance (P ≤ 0·005) and consistent findings across the three studies.0.0026384742010RMDN31540739940AG
rs2305230239130116470SHMT1umls:C0024305BeFreeA borderline significantly increased risk of NHL was also observed for CBS (rs1801181, Ex13+41C>T), FTHFD (rs2305230, Ex10-40G>T), SHMT1 (rs1979277, Ex12+138C>T), and SHMT1 (rs1979276, Ex12+236T>C), and these associations appeared to be contingent on dietary nutrient intakes.0.1279154222013ALDH1L13126137852CA
rs230523023913011102724560LOC102724560umls:C0024305BeFreeA borderline significantly increased risk of NHL was also observed for CBS (rs1801181, Ex13+41C>T), FTHFD (rs2305230, Ex10-40G>T), SHMT1 (rs1979277, Ex12+138C>T), and SHMT1 (rs1979276, Ex12+236T>C), and these associations appeared to be contingent on dietary nutrient intakes.0.0008143262013ALDH1L13126137852CA
rs2347062391301110840ALDH1L1umls:C0024305BeFreeA significantly reduced risk of NHL was associated with the homozygous TT genotype in CBS (rs234706, Ex9+33C>T) (OR = 0.51, 95 % CI 0.31-0.84), the homozygous CC genotype in MBD2 (rs603097, -2176C>T) (OR = 0.37, 95 % CI 0.17-0.79), the heterozygote AG genotype in FTHFD (rs1127717, Ex21+31A>G) (OR = 0.73, 95 % CI 0.55-0.98), and a borderline significantly reduced risk of NHL was observed for the homozygous CC genotype in MTRR (rs161870, Ex5+136T>C) (OR = 0.23, 95 % CI 0.05-1.04).0.005548392013CBS2143065240GA
rs234706239130118932MBD2umls:C0024305BeFreeA significantly reduced risk of NHL was associated with the homozygous TT genotype in CBS (rs234706, Ex9+33C>T) (OR = 0.51, 95 % CI 0.31-0.84), the homozygous CC genotype in MBD2 (rs603097, -2176C>T) (OR = 0.37, 95 % CI 0.17-0.79), the heterozygote AG genotype in FTHFD (rs1127717, Ex21+31A>G) (OR = 0.73, 95 % CI 0.55-0.98), and a borderline significantly reduced risk of NHL was observed for the homozygous CC genotype in MTRR (rs161870, Ex5+136T>C) (OR = 0.23, 95 % CI 0.05-1.04).0.0002714422013CBS2143065240GA
rs234706239130114552MTRRumls:C0024305BeFreeA significantly reduced risk of NHL was associated with the homozygous TT genotype in CBS (rs234706, Ex9+33C>T) (OR = 0.51, 95 % CI 0.31-0.84), the homozygous CC genotype in MBD2 (rs603097, -2176C>T) (OR = 0.37, 95 % CI 0.17-0.79), the heterozygote AG genotype in FTHFD (rs1127717, Ex21+31A>G) (OR = 0.73, 95 % CI 0.55-0.98), and a borderline significantly reduced risk of NHL was observed for the homozygous CC genotype in MTRR (rs161870, Ex5+136T>C) (OR = 0.23, 95 % CI 0.05-1.04).0.005548392013CBS2143065240GA
rs2582869193906832194FASNumls:C0024305BeFreeAccordingly, the single most significant SNPs associated with NHL were FAS rs4934436 (p-trend = 0.0024), IRF4 rs12211228 (p-trend = 0.0026), TNFSF13B rs2582869 (p-trend = 0.0055), TANK rs1921310 (p-trend = 0.0025), TNFSF7 rs16994592 (p-trend = 0.0024), and TNFRSF13C rs6002551 (p-trend = 0.0074).0.0005428842009LOC10537035413108259797AG
rs2647012234553803662IRF4umls:C0024305BeFreeOnly two variants (rs872071 in IRF4 and rs2647012 in HLA class II) were significantly associated with NHL risk in Chinese, with the ORs of 1.20 (95% CI, 1.05-1.38; P = 0.009) and 1.20 (95% CI, 1.03-1.39; P = 0.018) for per allele of rs872071 and rs2647012, respectively, calculated using an additive model.0.0010857672013NA632696681TC
rs2855429211487567918GPANK1umls:C0024305BeFreeAccordingly, SNPs in RING1/RXRB (rs2855429), AIF1 (rs2857597), and BAT4 (rs3115667) were associated with NHL (P-trends ≤ 0.0002) and both diffuse large B-cell and follicular lymphomas (P-trends < 0.05).0.0002714422011COL11A2633190412AC
rs285542921148756199AIF1umls:C0024305BeFreeAccordingly, SNPs in RING1/RXRB (rs2855429), AIF1 (rs2857597), and BAT4 (rs3115667) were associated with NHL (P-trends ≤ 0.0002) and both diffuse large B-cell and follicular lymphomas (P-trends < 0.05).0.0026384742011COL11A2633190412AC
rs2855429211487566257RXRBumls:C0024305BeFreeAccordingly, SNPs in RING1/RXRB (rs2855429), AIF1 (rs2857597), and BAT4 (rs3115667) were associated with NHL (P-trends ≤ 0.0002) and both diffuse large B-cell and follicular lymphomas (P-trends < 0.05).0.0002714422011COL11A2633190412AC
rs2855429211487566015RING1umls:C0024305BeFreeAccordingly, SNPs in RING1/RXRB (rs2855429), AIF1 (rs2857597), and BAT4 (rs3115667) were associated with NHL (P-trends ≤ 0.0002) and both diffuse large B-cell and follicular lymphomas (P-trends < 0.05).0.0002714422011COL11A2633190412AC
rs2857597211487567918GPANK1umls:C0024305BeFreeAccordingly, SNPs in RING1/RXRB (rs2855429), AIF1 (rs2857597), and BAT4 (rs3115667) were associated with NHL (P-trends ≤ 0.0002) and both diffuse large B-cell and follicular lymphomas (P-trends < 0.05).0.0002714422011AIF1631617223TA
rs2857597211487566257RXRBumls:C0024305BeFreeAccordingly, SNPs in RING1/RXRB (rs2855429), AIF1 (rs2857597), and BAT4 (rs3115667) were associated with NHL (P-trends ≤ 0.0002) and both diffuse large B-cell and follicular lymphomas (P-trends < 0.05).0.0002714422011AIF1631617223TA
rs2857597211487566015RING1umls:C0024305BeFreeAccordingly, SNPs in RING1/RXRB (rs2855429), AIF1 (rs2857597), and BAT4 (rs3115667) were associated with NHL (P-trends ≤ 0.0002) and both diffuse large B-cell and follicular lymphomas (P-trends < 0.05).0.0002714422011AIF1631617223TA
rs285759721148756199AIF1umls:C0024305BeFreeAccordingly, SNPs in RING1/RXRB (rs2855429), AIF1 (rs2857597), and BAT4 (rs3115667) were associated with NHL (P-trends ≤ 0.0002) and both diffuse large B-cell and follicular lymphomas (P-trends < 0.05).0.0026384742011AIF1631617223TA
rs28933375NA5551PRF1umls:C0024305CLINVARNA0.24NAPRF11070598966TC
rs2893669912010812843CASP10umls:C0024305UNIPROTInactivating mutations of CASP10 gene in non-Hodgkin lymphomas.0.3698254462002CASP102201209388CT
rs28936699NA843CASP10umls:C0024305CLINVARNA0.369825446NACASP102201209388CT
rs3115667211487567918GPANK1umls:C0024305BeFreeAccordingly, SNPs in RING1/RXRB (rs2855429), AIF1 (rs2857597), and BAT4 (rs3115667) were associated with NHL (P-trends ≤ 0.0002) and both diffuse large B-cell and follicular lymphomas (P-trends < 0.05).0.0002714422011NA631675622TC
rs3115667211487566257RXRBumls:C0024305BeFreeAccordingly, SNPs in RING1/RXRB (rs2855429), AIF1 (rs2857597), and BAT4 (rs3115667) were associated with NHL (P-trends ≤ 0.0002) and both diffuse large B-cell and follicular lymphomas (P-trends < 0.05).0.0002714422011NA631675622TC
rs311566721148756199AIF1umls:C0024305BeFreeAccordingly, SNPs in RING1/RXRB (rs2855429), AIF1 (rs2857597), and BAT4 (rs3115667) were associated with NHL (P-trends ≤ 0.0002) and both diffuse large B-cell and follicular lymphomas (P-trends < 0.05).0.0026384742011NA631675622TC
rs3115667211487566015RING1umls:C0024305BeFreeAccordingly, SNPs in RING1/RXRB (rs2855429), AIF1 (rs2857597), and BAT4 (rs3115667) were associated with NHL (P-trends ≤ 0.0002) and both diffuse large B-cell and follicular lymphomas (P-trends < 0.05).0.0002714422011NA631675622TC
rs3131379245987964477MSMBumls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0002714422014MSH5;MSH5-SAPCD1631753256GA
rs3131379245987967015TERTumls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0002714422014MSH5;MSH5-SAPCD1631753256GA
rs31313792459879654790TET2umls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0005428842014MSH5;MSH5-SAPCD1631753256GA
rs3131379245987964439MSH5umls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0002714422014MSH5;MSH5-SAPCD1631753256GA
rs3131379245987964046LSP1umls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0029099162014MSH5;MSH5-SAPCD1631753256GA
rs361525170186374049LTAumls:C0024305BeFreeA haplotype comprising SNPs in two proinflammatory cytokines, tumor necrosis factor-alpha and lymphotoxin-alpha (rs1800629, rs361525, rs1799724, rs909253, and rs2239704), increased non-Hodgkin lymphoma risk overall (OR, 1.31; 95% CI, 1.06-1.63; P = 0.01) and notably for diffuse large B cell (OR, 1.64; 95% CI, 1.23-2.19; P = 0.0007).0.0259277312006TNF631575324GA
rs361525170186377124TNFumls:C0024305BeFreeA haplotype comprising SNPs in two proinflammatory cytokines, tumor necrosis factor-alpha and lymphotoxin-alpha (rs1800629, rs361525, rs1799724, rs909253, and rs2239704), increased non-Hodgkin lymphoma risk overall (OR, 1.31; 95% CI, 1.06-1.63; P = 0.01) and notably for diffuse large B cell (OR, 1.64; 95% CI, 1.23-2.19; P = 0.0007).0.0497499412006TNF631575324GA
rs38137292217008651279C1RLumls:C0024305BeFreeA SNP-based analysis showed that a C>T base substitution for C1RL rs3813729 (odds ratio (OR)(CT) = 0.60, 95% confidence interval (CI) = 0.42-0.87, P(trend) = 0.0062) was associated with a decreased risk of overall NHL, as well as for DLBCL (OR(CT) = 0.39, 95% CI = 0.20-0.73; P(trend) = 0.0034).0.0026384742012NANANANANA
rs3817198245987964046LSP1umls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0029099162014LSP1111887776TC
rs3817198245987967015TERTumls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0002714422014LSP1111887776TC
rs3817198245987964477MSMBumls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0002714422014LSP1111887776TC
rs38171982459879654790TET2umls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0005428842014LSP1111887776TC
rs3817198245987964439MSH5umls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0002714422014LSP1111887776TC
rs386514057151989536573SLC19A1umls:C0024305BeFreeThe polymorphisms examined and haplotypes generated included thymidylate synthase (TYMS 28-bp triple repeat [3R]-->double repeat [2R], 1494del6, IVS6 -68C>T, 1122A>G, and 1053C>T); 5,10-methylenetetrahydrofolate reductase (MTHFR 677C>T and 1298A>C); serine hydroxymethyltransferase (SHMT1 C1420T); reduced folate carrier (RFC G80A); and methionine synthase (MTR A2756G), making the present study the largest and most comprehensive to date to evaluate associations between genetic polymorphisms in folatemetabolizing genes and NHL risk.0.0050055062004NANANANANA
rs386514057151989536470SHMT1umls:C0024305BeFreeThe polymorphisms examined and haplotypes generated included thymidylate synthase (TYMS 28-bp triple repeat [3R]-->double repeat [2R], 1494del6, IVS6 -68C>T, 1122A>G, and 1053C>T); 5,10-methylenetetrahydrofolate reductase (MTHFR 677C>T and 1298A>C); serine hydroxymethyltransferase (SHMT1 C1420T); reduced folate carrier (RFC G80A); and methionine synthase (MTR A2756G), making the present study the largest and most comprehensive to date to evaluate associations between genetic polymorphisms in folatemetabolizing genes and NHL risk.0.1279154222004NANANANANA
rs390011517071630841CASP8umls:C0024305BeFreeWe investigated five single nucleotide polymorphisms in four key caspase genes, CASP3 [Ex8-280C>A (rs6948) and Ex8+567T>C (rs1049216)], CASP8 Ex14-271A>T (rs13113), CASP9 Ex5+32G>A (rs1052576) and CASP10 Ex3-171A>G (rs3900115) to determine whether they alter risk for non-Hodgkin lymphoma (NHL) in a population-based case-control study of women in Connecticut (461 cases and 535 controls).0.007643982007CASP102201185954AG
rs397507444251468454524MTHFRumls:C0024305BeFreeAssociation of MTHFR C677T and A1298C polymorphisms with non-Hodgkin lymphoma susceptibility: evidence from a meta-analysis.0.1369166112014MTHFR111794407TG
rs397507444184325054524MTHFRumls:C0024305BeFreeThis is the first reported case of intracardiac thrombosis with MTHFR A1298C and factor XIII V34L mutations together with granulomatous reaction in non-Hodgkin lymphoma.0.1369166112008MTHFR111794407TG
rs397507444193910364524MTHFRumls:C0024305BeFreeMethylenetetrahydrofolate reductase C677T and A1298C gene polymorphisms and therapy-related toxicity in children treated for acute lymphoblastic leukemia and non-Hodgkin lymphoma.0.1369166112009MTHFR111794407TG
rs398122800NA843CASP10umls:C0024305CLINVARNA0.369825446NACASP102201209189-A
rs4016812459879654790TET2umls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0005428842014CLPTM1L51321972CT
rs401681245987964477MSMBumls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0002714422014CLPTM1L51321972CT
rs401681245987964046LSP1umls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0029099162014CLPTM1L51321972CT
rs401681245987964439MSH5umls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0002714422014CLPTM1L51321972CT
rs401681245987967015TERTumls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0002714422014CLPTM1L51321972CT
rs4150506208130007518XRCC4umls:C0024305BeFreeFive SNPs (BLM rs441399, RAD50 rs2237060, FAM82A2 rs2304583, ERCC3 rs4150506, and XRCC4 rs13178127) were particularly noteworthy because their gene regions were significantly associated with NHL or NHL subtypes (minP ≤ 0·05), or because of high level of statistical significance (P ≤ 0·005) and consistent findings across the three studies.0.0026384742010ERCC32127262970GA
rs4245739252034427157TP53umls:C0024305BeFreeThe functional TP53 rs1042522 and MDM4 rs4245739 genetic variants contribute to Non-Hodgkin lymphoma risk.0.1325398652014MDM41204549714CA
rs4245739252034424194MDM4umls:C0024305BeFreeThe functional TP53 rs1042522 and MDM4 rs4245739 genetic variants contribute to Non-Hodgkin lymphoma risk.0.0002714422014MDM41204549714CA
rs441399208130007518XRCC4umls:C0024305BeFreeFive SNPs (BLM rs441399, RAD50 rs2237060, FAM82A2 rs2304583, ERCC3 rs4150506, and XRCC4 rs13178127) were particularly noteworthy because their gene regions were significantly associated with NHL or NHL subtypes (minP ≤ 0·05), or because of high level of statistical significance (P ≤ 0·005) and consistent findings across the three studies.0.0026384742010NA1590822992GA
rs466163619414860834CASP1umls:C0024305BeFreeSNP-based analysis showed that CASP8 rs6736233 (odds ratio (OR) (CG) = 1.21; OR(CC) = 2.13; P trend = .011); CASP9 rs4661636 (OR(CT) = 0.89; OR(TT) = 0.77; P trend = .011); and CASP1 rs1785882 (OR(AT) = 1.12; OR(AA) = 1.30; P trend = .0054) were significantly associated with NHL risk and consistent across studies.0.0050055062009CASP9115496566CT
rs466163619414860842CASP9umls:C0024305BeFreeSNP-based analysis showed that CASP8 rs6736233 (odds ratio (OR) (CG) = 1.21; OR(CC) = 2.13; P trend = .011); CASP9 rs4661636 (OR(CT) = 0.89; OR(TT) = 0.77; P trend = .011); and CASP1 rs1785882 (OR(AT) = 1.12; OR(AA) = 1.30; P trend = .0054) were significantly associated with NHL risk and consistent across studies.0.007643982009CASP9115496566CT
rs4934436193906832194FASNumls:C0024305BeFreeAccordingly, the single most significant SNPs associated with NHL were FAS rs4934436 (p-trend = 0.0024), IRF4 rs12211228 (p-trend = 0.0026), TNFSF13B rs2582869 (p-trend = 0.0055), TANK rs1921310 (p-trend = 0.0025), TNFSF7 rs16994592 (p-trend = 0.0024), and TNFRSF13C rs6002551 (p-trend = 0.0074).0.0005428842009NA1089023563CT
rs4975616245987967015TERTumls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0002714422014NA51315545GA
rs4975616245987964477MSMBumls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0002714422014NA51315545GA
rs4975616245987964439MSH5umls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0002714422014NA51315545GA
rs49756162459879654790TET2umls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0005428842014NA51315545GA
rs4975616245987964046LSP1umls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0029099162014NA51315545GA
rs57438362186611554106TLR9umls:C0024305BeFreeThe rs5743836 polymorphism in TLR9 confers a population-based increased risk of non-Hodgkin lymphoma.0.0002714422012TLR9352226766AG
rs6002551193906832194FASNumls:C0024305BeFreeAccordingly, the single most significant SNPs associated with NHL were FAS rs4934436 (p-trend = 0.0024), IRF4 rs12211228 (p-trend = 0.0026), TNFSF13B rs2582869 (p-trend = 0.0055), TANK rs1921310 (p-trend = 0.0025), TNFSF7 rs16994592 (p-trend = 0.0024), and TNFRSF13C rs6002551 (p-trend = 0.0074).0.0005428842009CENPM2241942148GA
rs603097239130118932MBD2umls:C0024305BeFreeA significantly reduced risk of NHL was associated with the homozygous TT genotype in CBS (rs234706, Ex9+33C>T) (OR = 0.51, 95 % CI 0.31-0.84), the homozygous CC genotype in MBD2 (rs603097, -2176C>T) (OR = 0.37, 95 % CI 0.17-0.79), the heterozygote AG genotype in FTHFD (rs1127717, Ex21+31A>G) (OR = 0.73, 95 % CI 0.55-0.98), and a borderline significantly reduced risk of NHL was observed for the homozygous CC genotype in MTRR (rs161870, Ex5+136T>C) (OR = 0.23, 95 % CI 0.05-1.04).0.0002714422013MBD21854226736GA
rs6030972391301110840ALDH1L1umls:C0024305BeFreeA significantly reduced risk of NHL was associated with the homozygous TT genotype in CBS (rs234706, Ex9+33C>T) (OR = 0.51, 95 % CI 0.31-0.84), the homozygous CC genotype in MBD2 (rs603097, -2176C>T) (OR = 0.37, 95 % CI 0.17-0.79), the heterozygote AG genotype in FTHFD (rs1127717, Ex21+31A>G) (OR = 0.73, 95 % CI 0.55-0.98), and a borderline significantly reduced risk of NHL was observed for the homozygous CC genotype in MTRR (rs161870, Ex5+136T>C) (OR = 0.23, 95 % CI 0.05-1.04).0.005548392013MBD21854226736GA
rs603097239130114552MTRRumls:C0024305BeFreeA significantly reduced risk of NHL was associated with the homozygous TT genotype in CBS (rs234706, Ex9+33C>T) (OR = 0.51, 95 % CI 0.31-0.84), the homozygous CC genotype in MBD2 (rs603097, -2176C>T) (OR = 0.37, 95 % CI 0.17-0.79), the heterozygote AG genotype in FTHFD (rs1127717, Ex21+31A>G) (OR = 0.73, 95 % CI 0.55-0.98), and a borderline significantly reduced risk of NHL was observed for the homozygous CC genotype in MTRR (rs161870, Ex5+136T>C) (OR = 0.23, 95 % CI 0.05-1.04).0.005548392013MBD21854226736GA
rs63750042176019294436MSH2umls:C0024305BeFreeWe report homozygous truncating mutations in the mismatch repair gene MSH2 (226C-->T; Q76X) in three siblings who each developed T-cell NHL in early childhood.0.013721442007MSH2247408415CG,T
rs6449182255649593569IL6umls:C0024305BeFreeGiven the importance of understanding the genetic variations involved in the pathogenesis of non-Hodgkin's lymphoma (NHL), this pilot study was designed to investigate the impact of CD38 (184C/G; rs6449182) and IL-6 (-174 G/C; rs1800795) gene polymorphism on susceptibility of Egyptians to diffuse large B cell lymphoma (DLBCL); major types of NHL.0.0160025962016CD38415778830CG
rs673623319414860834CASP1umls:C0024305BeFreeSNP-based analysis showed that CASP8 rs6736233 (odds ratio (OR) (CG) = 1.21; OR(CC) = 2.13; P trend = .011); CASP9 rs4661636 (OR(CT) = 0.89; OR(TT) = 0.77; P trend = .011); and CASP1 rs1785882 (OR(AT) = 1.12; OR(AA) = 1.30; P trend = .0054) were significantly associated with NHL risk and consistent across studies.0.0050055062009CASP82201254251GC
rs673623319414860842CASP9umls:C0024305BeFreeSNP-based analysis showed that CASP8 rs6736233 (odds ratio (OR) (CG) = 1.21; OR(CC) = 2.13; P trend = .011); CASP9 rs4661636 (OR(CT) = 0.89; OR(TT) = 0.77; P trend = .011); and CASP1 rs1785882 (OR(AT) = 1.12; OR(AA) = 1.30; P trend = .0054) were significantly associated with NHL risk and consistent across studies.0.007643982009CASP82201254251GC
rs694817071630841CASP8umls:C0024305BeFreeWe investigated five single nucleotide polymorphisms in four key caspase genes, CASP3 [Ex8-280C>A (rs6948) and Ex8+567T>C (rs1049216)], CASP8 Ex14-271A>T (rs13113), CASP9 Ex5+32G>A (rs1052576) and CASP10 Ex3-171A>G (rs3900115) to determine whether they alter risk for non-Hodgkin lymphoma (NHL) in a population-based case-control study of women in Connecticut (461 cases and 535 controls).0.007643982007CASP34184627976GT
rs76796732459879654790TET2umls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0005428842014NA4105140377CA
rs7679673245987964439MSH5umls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0002714422014NA4105140377CA
rs7679673245987967015TERTumls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0002714422014NA4105140377CA
rs7679673245987964046LSP1umls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0029099162014NA4105140377CA
rs7679673245987964477MSMBumls:C0024305BeFreeIn the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction.0.0002714422014NA4105140377CA
rs799917236199457515XRCC1umls:C0024305BeFreeCompared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes.0.007643982013BRCA11743092919GT,C,A
rs79991723619945672BRCA1umls:C0024305BeFreeCompared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes.0.0052769482013BRCA11743092919GT,C,A
rs799917236199452068ERCC2umls:C0024305BeFreeCompared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes.0.0126494862013BRCA11743092919GT,C,A
rs799917236199457486WRNumls:C0024305BeFreeCompared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes.0.005548392013BRCA11743092919GT,C,A
rs8094402230552024155MBPumls:C0024305BeFreeA SNP-based analysis showed that MBP rs8094402 was associated with decreased risks of overall NHL (allele risk OR = 0.72, P-trend = 0.0018), DLBCL (allele risk OR = 0.72, P-trend = 0.036), and FL (allele risk OR = 0.67, P-trend = 0.021), while MASP2 rs12711521 was associated with a decreased risk of DLBCL (allele risk OR = 0.57, P-trend = 0.0042).0.0002714422013MBP1876995493AG
rs80944022305520210747MASP2umls:C0024305BeFreeA SNP-based analysis showed that MBP rs8094402 was associated with decreased risks of overall NHL (allele risk OR = 0.72, P-trend = 0.0018), DLBCL (allele risk OR = 0.72, P-trend = 0.036), and FL (allele risk OR = 0.67, P-trend = 0.021), while MASP2 rs12711521 was associated with a decreased risk of DLBCL (allele risk OR = 0.57, P-trend = 0.0042).0.0026384742013MBP1876995493AG
rs872071234553803662IRF4umls:C0024305BeFreeOnly two variants (rs872071 in IRF4 and rs2647012 in HLA class II) were significantly associated with NHL risk in Chinese, with the ORs of 1.20 (95% CI, 1.05-1.38; P = 0.009) and 1.20 (95% CI, 1.03-1.39; P = 0.018) for per allele of rs872071 and rs2647012, respectively, calculated using an additive model.0.0010857672013IRF46411064AG
rs909253170186377124TNFumls:C0024305BeFreeA haplotype comprising SNPs in two proinflammatory cytokines, tumor necrosis factor-alpha and lymphotoxin-alpha (rs1800629, rs361525, rs1799724, rs909253, and rs2239704), increased non-Hodgkin lymphoma risk overall (OR, 1.31; 95% CI, 1.06-1.63; P = 0.01) and notably for diffuse large B cell (OR, 1.64; 95% CI, 1.23-2.19; P = 0.0007).0.0497499412006LTA;LOC100287329631572536AG
rs909253196545547124TNFumls:C0024305BeFreeTwo single nucleotide polymorphisms (SNPs) in adjacent genes, lymphotoxin alpha (LTA +252G, rs909253 A>G) and tumor necrosis factor (TNF -308A, rs1800629 G>A), form the G-A haplotype repeatedly associated with increased risk of non-Hodgkin lymphoma (NHL) in individuals uninfected with HIV-1.0.0497499412009LTA;LOC100287329631572536AG
rs909253170186374049LTAumls:C0024305BeFreeA haplotype comprising SNPs in two proinflammatory cytokines, tumor necrosis factor-alpha and lymphotoxin-alpha (rs1800629, rs361525, rs1799724, rs909253, and rs2239704), increased non-Hodgkin lymphoma risk overall (OR, 1.31; 95% CI, 1.06-1.63; P = 0.01) and notably for diffuse large B cell (OR, 1.64; 95% CI, 1.23-2.19; P = 0.0007).0.0259277312006LTA;LOC100287329631572536AG
rs909253196545544049LTAumls:C0024305BeFreeTwo single nucleotide polymorphisms (SNPs) in adjacent genes, lymphotoxin alpha (LTA +252G, rs909253 A>G) and tumor necrosis factor (TNF -308A, rs1800629 G>A), form the G-A haplotype repeatedly associated with increased risk of non-Hodgkin lymphoma (NHL) in individuals uninfected with HIV-1.0.0259277312009LTA;LOC100287329631572536AG
rs9808753209526897124TNFumls:C0024305BeFreeA significant interaction with BMI was only observed for IFNGR2 (rs9808753 P(forinteraction) = .034) and IL7R (rs1494555 P(forinteraction) = .016) for NHL overall; IL7R (rs1494555 P(forinteraction) = .016) and TNF (1799724 P(forinteraction) = .031) for B-cell lymphoma; and IL5 (rs2069812 P(forinteraction) = .034) for T-cell lymphoma.0.0497499412011IFNGR22133415005AG
GWASdb Annotation(Total Genotypes:4)
Chr Pos SNP_Id RefGene EnsemblGene ENCODE_Factor ENCODE_TFBS Chromosome_interaction GTEx_eQTL SNP_TFBS_affinity_GWAS3D SNP_miRNA_target_affinity_PolymiRTS SNP_splicing_effect_Skippy SNP_splicing_effect_MutPred_Splice SNP_ns_protein_effect_dbNSFP SNP_syn_effect_Silva SNP_phosphorylation_effect_PhosSNP PhastCons_score PhyloP_score GERP++_RS Segway_state Ancestral_allele ESP_AF ESP_AFR ESP_AFR ESP_EUR TG_ASN TG_AMR TG_AFR TG_EUR Type Consequence bStatistic EncH3K27Ac EncH3K4Me1 EncH3K4Me3 EncNucleo OMIM Clinvar
2062297802rs6011002NM_016434,RTEL1NM_032957,RTEL1NR_037882,RTEL1-TNFRSF6BENST00000318100,ENSG00000026036ENST00000370018,ENSG00000026036ENST00000508582,ENSG00000026036ENST00000360203,ENSG00000026036ENST00000356810,ENSG00000026036ENST00000492259,ENSG00000026036ENST00000370006,ENSG00000026036ENST00000342852,ENSG00000026036ENST00000482936,ENSG00000026036ENST00000463361,ENSG00000026036NANAchr20,62290001,62300000,chr20,62310001,62320000,26,Hi-Cchr20,62290001,62300000,chr20,62190001,62200000,28,Hi-Cchr20,62290001,62300000,chr20,62480001,62490000,4,Hi-Cchr20,62290001,62300000,chr9,102010001,102020000,5,Hi-Cchr20,62290001,62300000,chr20,61710001,61720000,5,Hi-Cchr20,62290001,62300000,chr1,205110001,205120000,5,Hi-Cchr20,62290001,62300000,chr20,62310001,62320000,7,Hi-Cchr20,62290001,62300000,chr20,62320001,62330000,7,Hi-Cchr20,62290001,62300000,chr20,62140001,62150000,9,Hi-CNALM23,1.5964LM44,2.5795LM73,5.8525LM146,1.4055LM159,2.9019NANANANANA
2062309839rs6010620NM_016434,RTEL1NM_032957,RTEL1NR_037882,RTEL1-TNFRSF6BENST00000318100,ENSG00000026036ENST00000370018,ENSG00000026036ENST00000508582,ENSG00000026036ENST00000360203,ENSG00000026036ENST00000492259,ENSG00000026036ENST00000370006,ENSG00000026036ENST00000342852,ENSG00000026036ENST00000482936,ENSG00000026036MCV-1TFP.EGR1NAchr20,62300001,62310000,chr20,62690001,62700000,32,Hi-Cchr20,62300001,62310000,chr22,29420001,29430000,5,Hi-Cchr20,62300001,62310000,chr20,62540001,62550000,6,Hi-CNAAft1-primary,7.9057Asg1-DBD-primary,1.7781Cbf1-primary,1.7474Cbf1-primary,1.7474Fhl1-DBD-primary,1.4045NANANANANANA0.0020.7660.876TF2GNA
2062312299rs2297440NM_016434,RTEL1NM_032957,RTEL1NR_037882,RTEL1-TNFRSF6BENST00000318100,ENSG00000026036ENST00000370018,ENSG00000026036ENST00000508582,ENSG00000026036ENST00000360203,ENSG00000026036ENST00000492259,ENSG00000026036ENST00000370006,ENSG00000026036ENST00000342852,ENSG00000026036ENST00000482936,ENSG00000026036NANAchr20,62310001,62320000,chr20,62660001,62670000,25,Hi-Cchr20,62310001,62320000,chr20,62330001,62340000,26,Hi-Cchr20,62310001,62320000,chr20,62290001,62300000,26,Hi-Cchr20,62310001,62320000,chr20,60980001,60990000,35,Hi-Cchr20,62310001,62320000,chrX,88580001,88590000,64,Hi-Cchr20,62310001,62320000,chr17,870001,880000,6,Hi-Cchr20,62310001,62320000,chr4,39650001,39660000,6,Hi-Cchr20,62310001,62320000,chr20,62010001,62020000,15,Hi-Cchr20,62310001,62320000,chr20,62290001,62300000,7,Hi-Cchr20,62310001,62320000,chr22,50640001,50650000,7,Hi-Cchr20,62310001,62320000,chr12,84810001,84820000,7,Hi-CNAAro80-primary,1.3536Leu3-primary,8.4676Mig3-primary,1.8306Rhox11_1765,2.7383Rhox11_2205,2.9881NANANANANA
2062318220rs4809324NM_016434,RTEL1NM_032957,RTEL1NR_037882,RTEL1-TNFRSF6BENST00000318100,ENSG00000026036ENST00000370018,ENSG00000026036ENST00000508582,ENSG00000026036ENST00000360203,ENSG00000026036ENST00000492259,ENSG00000026036ENST00000370006,ENSG00000026036ENST00000342852,ENSG00000026036ENST00000482936,ENSG00000026036ENST00000480273,ENSG00000026036TFP.SMARCB1TFP.STAT1TFP.USF2CHMMTFP.SMC3TFP.FOSTFP.GTF2F1TFP.E2F6TFP.TAF1TFP.MYCTFP.STAT3TFP.MAXTFP.ELF1TFP.E2F1MCV-73TFP.EGR1NAchr20,62310001,62320000,chr20,62660001,62670000,25,Hi-Cchr20,62310001,62320000,chr20,62330001,62340000,26,Hi-Cchr20,62310001,62320000,chr20,62290001,62300000,26,Hi-Cchr20,62310001,62320000,chr20,60980001,60990000,35,Hi-Cchr20,62310001,62320000,chrX,88580001,88590000,64,Hi-Cchr20,62310001,62320000,chr17,870001,880000,6,Hi-C
GWASdb Snp Trait(Total Genotypes:0)
(Waiting for update.)
Mapped by lexical matching(Total Items:0)
(Waiting for update.)
Mapped by homologous gene(Total Items:0)
(Waiting for update.)
Chemical(Total Drugs:27)
CUI ChemicalName ChemicalID CasRN DiseaseName DiseaseID DirectEvidence PubMedIDs
C0024305allopurinolD000493315-30-0lymphoma, non-hodgkinMESH:D008228therapeutic2872506
C0024305amifostineD00499920537-88-6lymphoma, non-hodgkinMESH:D008228therapeutic11335791
C0024305bleomycinD00176111056-06-7lymphoma, non-hodgkinMESH:D008228therapeutic12172056
C0024305busulfanD00206655-98-1lymphoma, non-hodgkinMESH:D008228therapeutic10955873
C0024305chlorambucilD002699305-03-3lymphoma, non-hodgkinMESH:D008228therapeutic12512972
C0024305cyclophosphamideD00352050-18-0lymphoma, non-hodgkinMESH:D008228therapeutic11911406
C0024305calcitriolD00211732222-06-3lymphoma, non-hodgkinMESH:D008228marker/mechanism2261743
C0024305epirubicinD01525156420-45-2lymphoma, non-hodgkinMESH:D008228therapeutic1617662
C0024305leucovorinD0029551958/5/9lymphoma, non-hodgkinMESH:D008228therapeutic12172056
C0024305gemcitabineC056507103882-84-4lymphoma, non-hodgkinMESH:D008228therapeutic16467107
C0024305ifosfamideD0070693778-73-2lymphoma, non-hodgkinMESH:D008228therapeutic3132591
C0024305lenalidomideC467567-lymphoma, non-hodgkinMESH:D008228therapeutic18217897
C0024305lidocaineD008012137-58-6lymphoma, non-hodgkinMESH:D008228marker/mechanism8834551
C0024305lindaneD00155658-89-9lymphoma, non-hodgkinMESH:D008228marker/mechanism11700263
C0024305melphalanD008558148-82-3lymphoma, non-hodgkinMESH:D008228therapeutic10955873
C0024305meprobamateD00862057-53-4lymphoma, non-hodgkinMESH:D008228marker/mechanism8834551
C0024305mesnaD01508019767-45-4lymphoma, non-hodgkinMESH:D008228therapeutic11486401
C0024305methotrexateD0087271959/5/2lymphoma, non-hodgkinMESH:D008228therapeutic12172056
C0024305mitoxantroneD00894265271-80-9lymphoma, non-hodgkinMESH:D008228therapeutic1617662
C0024305paclitaxelD017239-lymphoma, non-hodgkinMESH:D008228therapeutic10800167
C0024305pegfilgrastimC455861-lymphoma, non-hodgkinMESH:D008228therapeutic14565651
C0024305phenytoinD01067257-41-0lymphoma, non-hodgkinMESH:D008228marker/mechanism7336147
C0024305teniposideD01371329767-20-2lymphoma, non-hodgkinMESH:D008228therapeutic4609765
C0024305thalidomideD01379250-35-1lymphoma, non-hodgkinMESH:D008228therapeutic17408102
C0024305thiotepaD01385252-24-4lymphoma, non-hodgkinMESH:D008228therapeutic10955873
C0024305vincristineD014750-lymphoma, non-hodgkinMESH:D008228therapeutic12172056
C0024305vindesineD01475153643-48-4lymphoma, non-hodgkinMESH:D008228therapeutic3327022
FDA approved drug and dosage information(Total Drugs:2)
DiseaseID Drug_name active_ingredients strength Dosage Form/Route Marketing Status TE code RLD RS
MESH:D008228calcijexcalcitriol0.001MG/ML Federal Register determination that product was not discontinued or withdrawn for safety or efficacy reasonsINJECTABLE;INJECTIONDiscontinuedNoneYesNo
MESH:D008228busulfexbusulfan6MG/MLINJECTABLE;INJECTIONPrescriptionAPYesYes
FDA labeling changes(Total Drugs:2)
DiseaseID Pediatric_Labeling_Date Trade_Name Generic_Name_or_Proper_Name Indications Studied Label Changes Summary Product Labeling BPCA(B) PREA(P) BPCA(B) and PREA(P) Pediatric Rule (R) Sponsor Pediatric Exclusivity Granted Date NNPS
MESH:D00822811/16/2001calcijexcalcitriolManagement of hypocalcemia in patients undergoing chronic renal dialysisThe safety and effectiveness of calcitriol was examined in a double-blind placebo-controlled trial of 35 pediatric patients (13-18 years of age) with end-stage renal disease and on dialysis. The primary efficacy endpoint favored the calcitriol-treated versus the placebo-treated patients Transient hypercalcemia was seen in 1 of 16 calcitriol-treated patients; 6 of 16 (38%) calcitriol-treated patients and 2 of 19 (11%) placebo-treated patients had Ca x P >75LabelingB---Abbott02/16/2001FALSE'
MESH:D00822801/13/2003busulfexbusulfanPart of a conditioning regimen administered prior to hematopoietic progenitor cell transplantation for a variety of malignant hematologic or non-malignant diseasesThe population pharmacokinetic estimates of busulfan for clearance and volume of distribution were determined in an open-label, uncontrolled PK study in 24 pediatric patients 5 months to 16 years who received busulfan as part of a conditioning regimen administered prior to hematopoietic progenitor cell transplantation for a variety of malignant hematologic or non-malignant diseases Suggested dosing regimenLabelingB---Orphan Medical12/3/2002FALSE'