lymphoma, non-hodgkin |
Disease ID | 691 |
---|---|
Disease | lymphoma, non-hodgkin |
Synonym | [m]malignant lymphoma, non-hodgkin's type [m]malignant lymphoma, small cleaved cell, diffuse [m]malignant lymphoma, small cleaved cell, diffuse (morphologic abnormality) [m]non-hodgkin's lymphoma [x]non-hodgkin's lymphoma, unspecified type [x]non-hodgkin's lymphoma, unspecified type (disorder) diffuse non-hodgkin's small cleaved cell (diffuse) lymphoma diffuse small cleaved cell lymphoma diffuse small cleaved lymphoma diffuse small cleaved-cell lymphoma lymphoma small cleaved diffuse lymphoma, atypical diffuse small lymphoid lymphoma, non hodgkin lymphoma, non hodgkin's lymphoma, non hodgkins lymphoma, non-hodgkin [disease/finding] lymphoma, non-hodgkin's lymphoma, non-hodgkin, familial lymphoma, non-hodgkins lymphoma, nonhodgkin lymphoma, nonhodgkin's lymphoma, nonhodgkins lymphoma, small cleaved cell, diffuse lymphoma, small cleaved-cell, diffuse malignant lymphoma non hodgkins type malignant lymphoma, cleaved cell [obs] malignant lymphoma, non-hodgkin malignant lymphoma, non-hodgkin's malignant lymphoma, non-hodgkin's type malignant lymphoma, non-hodgkin's, nos malignant lymphoma, small cell, noncleaved, diffuse [obs] malignant lymphoma, small cleaved cell [obs] malignant lymphoma, small cleaved cell, diffuse -retired- malignant lymphoma, small cleaved cell, diffuse [obs] malignant lymphoma, undifferentiated cell type [obs] malignant lymphoma, undifferentiated cell, non-burkitt [obs] nhl nhl - non-hodgkin's lymphoma nhl, nos non hodgkin lymphoma non hodgkin's lymphoma non hodgkin's lymphoma (nhl) non hodgkins lymphoma non-hodgkin lymphoma non-hodgkin lymphoma (category) non-hodgkin lymphoma - category non-hodgkin lymphoma - category (morphologic abnormality) non-hodgkin lymphoma, no icd-o subtype non-hodgkin lymphoma, no icd-o subtype (morphologic abnormality) non-hodgkin lymphoma, no international classification of diseases for oncology subtype non-hodgkin lymphoma, no international classification of diseases for oncology subtype (morphologic abnormality) non-hodgkin lymphoma, nos non-hodgkin's lymphoma non-hodgkin's lymphoma (clinical) non-hodgkin's lymphoma (disorder) non-hodgkin's lymphoma (nhl) non-hodgkin's lymphoma - disorder non-hodgkin's lymphoma nos non-hodgkin's lymphoma, nos non-hodgkin`s lymphoma non-hodgkins lymphoma nonhodgkin lymphoma nonhodgkin's lymphoma nonhodgkins lymphoma small cleaved cell lymphoma, diffuse small cleaved lymphoma diffuse small cleaved-cell lymphoma, diffuse |
Orphanet | |
OMIM | |
DOID | |
MeSH | |
SNOMED-CT | |
Comorbidity | UMLS | Disease | Sentences' Count(Total Sentences:95) C0024299 | lymphoma | 31 C0079731 | b-cell non-hodgkin lymphoma | 13 C0024299 | lymphomas | 11 C0042769 | virus infection | 6 C0024301 | follicular lymphoma | 6 C0079731 | b-cell lymphoma | 5 C0270612 | leukoencephalopathy | 4 C0079744 | diffuse large b-cell lymphoma | 4 C0023418 | leukemia | 4 C0023524 | progressive multifocal leukoencephalopathy | 4 C0027947 | neutropenia | 3 C0032285 | pneumonia | 3 C0003864 | arthritis | 2 C0019360 | zoster | 2 C0019158 | hepatitis | 2 C0042384 | vasculitis | 2 C0019163 | hepatitis b | 2 C0004623 | bacterial infections | 2 C0376545 | hematologic malignancies | 2 C0019360 | herpes zoster | 2 C0004623 | bacterial infection | 2 C0006413 | burkitt lymphoma | 2 C0021053 | immune disease | 2 C0007114 | skin cancer | 2 C0742472 | cns lymphoma | 2 C0019196 | hepatitis c | 2 C0023449 | acute lymphocytic leukemia | 1 C0010068 | coronary artery disease | 1 C0019618 | histiocytosis | 1 C0003872 | psoriatic arthritis | 1 C0021053 | immune dysfunction | 1 C0027726 | nephrotic syndrome | 1 C0007114 | skin cancers | 1 C0014038 | encephalitis | 1 C0002880 | autoimmune hemolytic anemia | 1 C0744421 | immune complex glomerulonephritis | 1 C0023443 | hairy cell leukemia | 1 C0021053 | immune disorders | 1 C0023290 | visceral leishmaniasis | 1 C0030807 | pemphigus | 1 C0007570 | celiac disease | 1 C0026764 | myeloma | 1 C0023448 | lymphocytic leukemia | 1 C0036220 | kaposi's sarcoma | 1 C0032285 | pneumonitis | 1 C0017658 | glomerulonephritis | 1 C0017665 | membranous glomerulonephritis | 1 C0023473 | chronic myeloid leukemia | 1 C0026764 | multiple myeloma | 1 C0021053 | immune disorder | 1 C0242647 | malt lymphoma | 1 C0043194 | wiskott-aldrich syndrome | 1 C0334634 | mantle cell lymphoma | 1 C0007115 | thyroid cancer | 1 C0026948 | mycosis fungoides | 1 C0010403 | cryoglobulinemia | 1 C0206083 | central pontine myelinolysis | 1 C0011603 | dermatitis | 1 C0019829 | hodgkin lymphoma | 1 C0025202 | melanoma | 1 C0152025 | polyneuropathy | 1 C0206062 | interstitial lung disease | 1 C0026848 | muscle disorders | 1 C1261473 | sarcoma | 1 C0032305 | pneumocystis pneumonia | 1 C0023281 | leishmaniasis | 1 C0023470 | myeloid leukemia | 1 C0019069 | hemophilia | 1 C1275081 | cardiofaciocutaneous syndrome | 1 C0007115 | thyroid ca | 1 C0038362 | stomatitis | 1 C0003873 | rheumatoid arthritis | 1 C0023418 | leukaemia | 1 C0007134 | renal cell carcinoma | 1 C0026946 | mycosis | 1 C0024314 | lymphoproliferative disease | 1 C0040034 | thrombocytopenia | 1 C0699893 | nonmelanoma skin cancer | 1 C0282193 | iron overload | 1 C0079731 | b cell lymphoma | 1 C0002871 | anemia | 1 C0002878 | hemolytic anemia | 1 C0009402 | colorectal cancer | 1 C0024115 | lung disease | 1 C0011608 | dermatitis herpetiformis | 1 C0023827 | liposarcoma | 1 C0740372 | gastrointestinal lymphoma | 1 C0007113 | rectal cancer | 1 C0376545 | hematological malignancies | 1 C0021933 | intussusception | 1 C0019348 | herpes simplex | 1 C0032305 | pneumocystis jiroveci pneumonia | 1 C0032305 | pneumocystis | 1 C0085669 | acute leukemia | 1 C0027708 | wilms' tumor | 1 |
Curated Gene | Entrez_id | Symbol | Resource(Total Genes:23) HLA-DRB1 | 3123 | CTD_human TP53 | 7157 | CLINVAR BCL2 | 596 | CTD_human BCL6 | 604 | CTD_human EPHX1 | 2052 | CTD_human CSF2 | 1437 | CTD_human TYMS | 7298 | CTD_human CHEK2 | 11200 | CTD_human IFNA2 | 3440 | CTD_human MTHFR | 4524 | CTD_human BRAF | 673 | CLINVAR;UNIPROT CSF3 | 1440 | CTD_human RTEL1 | 51750 | OMIM CYP2E1 | 1571 | CTD_human SHMT1 | 6470 | CTD_human RAD54L | 8438 | CLINVAR;CTD_human CASP10 | 843 | CLINVAR;CTD_human;UNIPROT BHMT | 635 | CTD_human FPGS | 2356 | CTD_human TFRC | 7037 | CTD_human CBS | 875 | CTD_human PRF1 | 5551 | CLINVAR;CTD_human RAD54B | 25788 | CLINVAR |
Inferring Gene | Entrez_id | Symbol | Resource(Total Genes:259) 64746 | ACBD3 | infer 6868 | ADAM17 | infer 128 | ADH5 | infer 154 | ADRB2 | infer 155 | ADRB3 | infer 196 | AHR | infer 10327 | AKR1A1 | infer 1645 | AKR1C1 | infer 8644 | AKR1C3 | infer 10840 | ALDH1L1 | infer 336 | APOA2 | infer 337 | APOA4 | infer 338 | APOB | infer 348 | APOE | infer 367 | AR | infer 285973 | ATG9B | infer 572 | BAD | infer 578 | BAK1 | infer 581 | BAX | infer 596 | BCL2 | infer 598 | BCL2L1 | infer 604 | BCL6 | infer 635 | BHMT | infer 638 | BIK | infer 641 | BLM | infer 672 | BRCA1 | infer 713 | C1QB | infer 714 | C1QC | infer 114905 | C1QTNF7 | infer 51279 | C1RL | infer 716 | C1S | infer 717 | C2 | infer 718 | C3 | infer 719 | C3AR1 | infer 720 | C4A | infer 722 | C4BPA | infer 725 | C4BPB | infer 727 | C5 | infer 728 | C5AR1 | infer 729 | C6 | infer 730 | C7 | infer 732 | C8B | infer 735 | C9 | infer 834 | CASP1 | infer 843 | CASP10 | infer 23581 | CASP14 | infer 835 | CASP2 | infer 836 | CASP3 | infer 837 | CASP4 | infer 838 | CASP5 | infer 839 | CASP6 | infer 840 | CASP7 | infer 841 | CASP8 | infer 9994 | CASP8AP2 | infer 842 | CASP9 | infer 875 | CBS | infer 6347 | CCL2 | infer 6352 | CCL5 | infer 6355 | CCL8 | infer 595 | CCND1 | infer 1232 | CCR3 | infer 940 | CD28 | infer 958 | CD40 | infer 4179 | CD46 | infer 1604 | CD55 | infer 966 | CD59 | infer 22918 | CD93 | infer 1019 | CDK4 | infer 1029 | CDKN2A | infer 1030 | CDKN2B | infer 1071 | CETP | infer 629 | CFB | infer 1675 | CFD | infer 3075 | CFH | infer 3078 | CFHR1 | infer 81494 | CFHR5 | infer 1147 | CHUK | infer 1191 | CLU | infer 1312 | COMT | infer 1378 | CR1 | infer 1380 | CR2 | infer 1493 | CTLA4 | infer 1524 | CX3CR1 | infer 7852 | CXCR4 | infer 1535 | CYBA | infer 1584 | CYP11B1 | infer 1585 | CYP11B2 | infer 1586 | CYP17A1 | infer 1588 | CYP19A1 | infer 1543 | CYP1A1 | infer 1544 | CYP1A2 | infer 1545 | CYP1B1 | infer 1589 | CYP21A2 | infer 1559 | CYP2C9 | infer 1571 | CYP2E1 | infer 1719 | DHFR | infer 1813 | DRD2 | infer 1814 | DRD3 | infer 1816 | DRD5 | infer 2052 | EPHX1 | infer 2053 | EPHX2 | infer 2068 | ERCC2 | infer 2073 | ERCC5 | infer 2099 | ESR1 | infer 2100 | ESR2 | infer 2208 | FCER2 | infer 2212 | FCGR2A | infer 2214 | FCGR3A | infer 2222 | FDFT1 | infer 2321 | FLT1 | infer 2356 | FPGS | infer 2688 | GH1 | infer 2690 | GHR | infer 51738 | GHRL | infer 2876 | GPX1 | infer 2879 | GPX4 | infer 2944 | GSTM1 | infer 2947 | GSTM3 | infer 2950 | GSTP1 | infer 2952 | GSTT1 | infer 3014 | H2AFX | infer 3105 | HLA-A | infer 3106 | HLA-B | infer 3107 | HLA-C | infer 3119 | HLA-DQB1 | infer 3123 | HLA-DRB1 | infer 3157 | HMGCS1 | infer 3158 | HMGCS2 | infer 3240 | HP | infer 3292 | HSD17B1 | infer 3294 | HSD17B2 | infer 3283 | HSD3B1 | infer 3284 | HSD3B2 | infer 3383 | ICAM1 | infer 29851 | ICOS | infer 3458 | IFNG | infer 3479 | IGF1 | infer 3480 | IGF1R | infer 3481 | IGF2 | infer 3482 | IGF2R | infer 3484 | IGFBP1 | infer 3486 | IGFBP3 | infer 3551 | IKBKB | infer 3586 | IL10 | infer 3603 | IL16 | infer 3565 | IL4 | infer 3566 | IL4R | infer 3689 | ITGB2 | infer 3952 | LEP | infer 3981 | LIG4 | infer 3990 | LIPC | infer 4023 | LPL | infer 4049 | LTA | infer 10747 | MASP2 | infer 4153 | MBL2 | infer 4157 | MC1R | infer 4286 | MITF | infer 4312 | MMP1 | infer 4313 | MMP2 | infer 4314 | MMP3 | infer 4318 | MMP9 | infer 4353 | MPO | infer 4436 | MSH2 | infer 4524 | MTHFR | infer 10588 | MTHFS | infer 4548 | MTR | infer 4552 | MTRR | infer 9 | NAT1 | infer 10 | NAT2 | infer 4683 | NBN | infer 4688 | NCF2 | infer 4689 | NCF4 | infer 8202 | NCOA3 | infer 4790 | NFKB1 | infer 4792 | NFKBIA | infer 4793 | NFKBIB | infer 64127 | NOD2 | infer 4842 | NOS1 | infer 4843 | NOS2 | infer 4846 | NOS3 | infer 4864 | NPC1 | infer 10577 | NPC2 | infer 4852 | NPY | infer 1728 | NQO1 | infer 7376 | NR1H2 | infer 10062 | NR1H3 | infer 2908 | NR3C1 | infer 4948 | OCA2 | infer 4968 | OGG1 | infer 56288 | PARD3 | infer 8505 | PARG | infer 142 | PARP1 | infer 23590 | PDSS1 | infer 5241 | PGR | infer 5443 | POMC | infer 5617 | PRL | infer 5618 | PRLR | infer 5742 | PTGS1 | infer 5743 | PTGS2 | infer 5770 | PTPN1 | infer 5879 | RAC1 | infer 5880 | RAC2 | infer 10111 | RAD50 | infer 5896 | RAG1 | infer 5966 | REL | infer 8737 | RIPK1 | infer 866 | SERPINA6 | infer 710 | SERPING1 | infer 6462 | SHBG | infer 6470 | SHMT1 | infer 6472 | SHMT2 | infer 23411 | SIRT1 | infer 9963 | SLC23A1 | infer 9962 | SLC23A2 | infer 6531 | SLC6A3 | infer 9021 | SOCS3 | infer 6647 | SOD1 | infer 6648 | SOD2 | infer 6649 | SOD3 | infer 6715 | SRD5A1 | infer 6770 | STAR | infer 83930 | STARD3NL | infer 6774 | STAT3 | infer 6778 | STAT6 | infer 7076 | TIMP1 | infer 7078 | TIMP3 | infer 7096 | TLR1 | infer 81793 | TLR10 | infer 7097 | TLR2 | infer 7099 | TLR4 | infer 10333 | TLR6 | infer 7124 | TNF | infer 7132 | TNFRSF1A | infer 7133 | TNFRSF1B | infer 944 | TNFSF8 | infer 8717 | TRADD | infer 7186 | TRAF2 | infer 7188 | TRAF5 | infer 222642 | TSPO2 | infer 7298 | TYMS | infer 7299 | TYR | infer 7412 | VCAM1 | infer 7421 | VDR | infer 7422 | VEGFA | infer 7486 | WRN | infer 7515 | XRCC1 | infer 7517 | XRCC3 | infer 847 | CAT | infer 4862 | NPAS2 | infer 5444 | PON1 | infer 3567 | IL5 | infer 3569 | IL6 | infer 5468 | PPARG | infer 3552 | IL1A | infer 3553 | IL1B | infer 3557 | IL1RN | infer 3558 | IL2 | infer 4609 | MYC | infer 6573 | SLC19A1 | infer |
Text Mined Gene | (Waiting for update.) |
Locus | (Waiting for update.) |
Disease ID | 691 |
---|---|
Disease | lymphoma, non-hodgkin |
Manually Symptom | (Waiting for update.) |
Text Mined Symptom | UMLS | Name | Sentences' Count(Total Symptoms:12) C0042769 | virus infection | 6 C0032227 | pleural effusion | 3 C0746883 | febrile neutropenia | 3 C0021051 | immunodeficiency | 3 C0007114 | skin cancer | 2 C0037140 | b virus infection | 2 C0042384 | vasculitis | 2 C0008733 | chylothorax | 1 C0026848 | muscle disorders | 1 C0037926 | spinal cord compression | 1 C1112570 | paraneoplastic pemphigus | 1 C0152025 | polyneuropathy | 1 |
Manually Genotype(Total Text Mining Genotypes:0) |
---|
(Waiting for update.) |
All Snps(Total Genotypes:180) | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
snpId | pubmedId | geneId | geneSymbol | diseaseId | sourceId | sentence | score | Year | geneSymbol_dbSNP | CHROMOSOME | POS | REF | ALT |
rs1041163 | 19533685 | 3596 | IL13 | umls:C0024305 | BeFree | Interleukin 13 (IL13) Ex4+98A>G SNP (rs20541) was associated with decreased NHL risk (OR(AG/AA) = 0.62,95% CI = 0.44-0.87, p = 0.006), as was vascular cell adhesion molecule-1, VCAM1 Ex9+149G>A SNP (rs1041163) (OR(CT) = 0.77, 95% CI = 0.54-1.10, OR(CC) = 0.35, 95% CI = 0.16-0.76, p-trend = 0.007). | 0.000814326 | 2009 | VCAM1 | 1 | 100718269 | T | C |
rs1041163 | 19533685 | 7412 | VCAM1 | umls:C0024305 | BeFree | Interleukin 13 (IL13) Ex4+98A>G SNP (rs20541) was associated with decreased NHL risk (OR(AG/AA) = 0.62,95% CI = 0.44-0.87, p = 0.006), as was vascular cell adhesion molecule-1, VCAM1 Ex9+149G>A SNP (rs1041163) (OR(CT) = 0.77, 95% CI = 0.54-1.10, OR(CC) = 0.35, 95% CI = 0.16-0.76, p-trend = 0.007). | 0.002638474 | 2009 | VCAM1 | 1 | 100718269 | T | C |
rs1042522 | 25203442 | 7157 | TP53 | umls:C0024305 | BeFree | The functional TP53 rs1042522 and MDM4 rs4245739 genetic variants contribute to Non-Hodgkin lymphoma risk. | 0.132539865 | 2014 | TP53 | 17 | 7676154 | G | T,C |
rs1042522 | 25203442 | 4194 | MDM4 | umls:C0024305 | BeFree | The functional TP53 rs1042522 and MDM4 rs4245739 genetic variants contribute to Non-Hodgkin lymphoma risk. | 0.000271442 | 2014 | TP53 | 17 | 7676154 | G | T,C |
rs104894176 | NA | 5551 | PRF1 | umls:C0024305 | CLINVAR | NA | 0.24 | NA | PRF1 | 10 | 70598599 | C | T |
rs1048943 | 19899130 | 1543 | CYP1A1 | umls:C0024305 | BeFree | Our data provide evidence that the GSTP1 rs1695 and the CYP1A1 rs1048943 genotypes affect the risk of NHL in Korea. | 0.019207698 | 2009 | CYP1A1 | 15 | 74720644 | T | G,C,A |
rs1048943 | 19899130 | 2950 | GSTP1 | umls:C0024305 | BeFree | Our data provide evidence that the GSTP1 rs1695 and the CYP1A1 rs1048943 genotypes affect the risk of NHL in Korea. | 0.023289257 | 2009 | CYP1A1 | 15 | 74720644 | T | G,C,A |
rs1049216 | 17071630 | 841 | CASP8 | umls:C0024305 | BeFree | We investigated five single nucleotide polymorphisms in four key caspase genes, CASP3 [Ex8-280C>A (rs6948) and Ex8+567T>C (rs1049216)], CASP8 Ex14-271A>T (rs13113), CASP9 Ex5+32G>A (rs1052576) and CASP10 Ex3-171A>G (rs3900115) to determine whether they alter risk for non-Hodgkin lymphoma (NHL) in a population-based case-control study of women in Connecticut (461 cases and 535 controls). | 0.00764398 | 2007 | CASP3 | 4 | 184628935 | A | G |
rs1051266 | 15198953 | 6573 | SLC19A1 | umls:C0024305 | BeFree | The polymorphisms examined and haplotypes generated included thymidylate synthase (TYMS 28-bp triple repeat [3R]-->double repeat [2R], 1494del6, IVS6 -68C>T, 1122A>G, and 1053C>T); 5,10-methylenetetrahydrofolate reductase (MTHFR 677C>T and 1298A>C); serine hydroxymethyltransferase (SHMT1 C1420T); reduced folate carrier (RFC G80A); and methionine synthase (MTR A2756G), making the present study the largest and most comprehensive to date to evaluate associations between genetic polymorphisms in folatemetabolizing genes and NHL risk. | 0.005005506 | 2004 | SLC19A1 | 21 | 45537880 | T | C |
rs1051266 | 15198953 | 6470 | SHMT1 | umls:C0024305 | BeFree | The polymorphisms examined and haplotypes generated included thymidylate synthase (TYMS 28-bp triple repeat [3R]-->double repeat [2R], 1494del6, IVS6 -68C>T, 1122A>G, and 1053C>T); 5,10-methylenetetrahydrofolate reductase (MTHFR 677C>T and 1298A>C); serine hydroxymethyltransferase (SHMT1 C1420T); reduced folate carrier (RFC G80A); and methionine synthase (MTR A2756G), making the present study the largest and most comprehensive to date to evaluate associations between genetic polymorphisms in folatemetabolizing genes and NHL risk. | 0.127915422 | 2004 | SLC19A1 | 21 | 45537880 | T | C |
rs1052576 | 17071630 | 841 | CASP8 | umls:C0024305 | BeFree | We investigated five single nucleotide polymorphisms in four key caspase genes, CASP3 [Ex8-280C>A (rs6948) and Ex8+567T>C (rs1049216)], CASP8 Ex14-271A>T (rs13113), CASP9 Ex5+32G>A (rs1052576) and CASP10 Ex3-171A>G (rs3900115) to determine whether they alter risk for non-Hodgkin lymphoma (NHL) in a population-based case-control study of women in Connecticut (461 cases and 535 controls). | 0.00764398 | 2007 | CASP9 | 1 | 15506048 | T | C |
rs10993994 | 24598796 | 54790 | TET2 | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.000542884 | 2014 | MSMB | 10 | 46046326 | A | G |
rs10993994 | 24598796 | 4046 | LSP1 | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.002909916 | 2014 | MSMB | 10 | 46046326 | A | G |
rs10993994 | 24598796 | 4477 | MSMB | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.000271442 | 2014 | MSMB | 10 | 46046326 | A | G |
rs10993994 | 24598796 | 4439 | MSH5 | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.000271442 | 2014 | MSMB | 10 | 46046326 | A | G |
rs10993994 | 24598796 | 7015 | TERT | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.000271442 | 2014 | MSMB | 10 | 46046326 | A | G |
rs1127717 | 23913011 | 10840 | ALDH1L1 | umls:C0024305 | BeFree | A significantly reduced risk of NHL was associated with the homozygous TT genotype in CBS (rs234706, Ex9+33C>T) (OR = 0.51, 95 % CI 0.31-0.84), the homozygous CC genotype in MBD2 (rs603097, -2176C>T) (OR = 0.37, 95 % CI 0.17-0.79), the heterozygote AG genotype in FTHFD (rs1127717, Ex21+31A>G) (OR = 0.73, 95 % CI 0.55-0.98), and a borderline significantly reduced risk of NHL was observed for the homozygous CC genotype in MTRR (rs161870, Ex5+136T>C) (OR = 0.23, 95 % CI 0.05-1.04). | 0.00554839 | 2013 | ALDH1L1;ALDH1L1-AS1 | 3 | 126107216 | T | C |
rs1127717 | 23913011 | 8932 | MBD2 | umls:C0024305 | BeFree | A significantly reduced risk of NHL was associated with the homozygous TT genotype in CBS (rs234706, Ex9+33C>T) (OR = 0.51, 95 % CI 0.31-0.84), the homozygous CC genotype in MBD2 (rs603097, -2176C>T) (OR = 0.37, 95 % CI 0.17-0.79), the heterozygote AG genotype in FTHFD (rs1127717, Ex21+31A>G) (OR = 0.73, 95 % CI 0.55-0.98), and a borderline significantly reduced risk of NHL was observed for the homozygous CC genotype in MTRR (rs161870, Ex5+136T>C) (OR = 0.23, 95 % CI 0.05-1.04). | 0.000271442 | 2013 | ALDH1L1;ALDH1L1-AS1 | 3 | 126107216 | T | C |
rs1127717 | 23913011 | 4552 | MTRR | umls:C0024305 | BeFree | A significantly reduced risk of NHL was associated with the homozygous TT genotype in CBS (rs234706, Ex9+33C>T) (OR = 0.51, 95 % CI 0.31-0.84), the homozygous CC genotype in MBD2 (rs603097, -2176C>T) (OR = 0.37, 95 % CI 0.17-0.79), the heterozygote AG genotype in FTHFD (rs1127717, Ex21+31A>G) (OR = 0.73, 95 % CI 0.55-0.98), and a borderline significantly reduced risk of NHL was observed for the homozygous CC genotype in MTRR (rs161870, Ex5+136T>C) (OR = 0.23, 95 % CI 0.05-1.04). | 0.00554839 | 2013 | ALDH1L1;ALDH1L1-AS1 | 3 | 126107216 | T | C |
rs1136410 | 20196871 | 142 | PARP1 | umls:C0024305 | BeFree | PARP-1 Val762Ala polymorphism is associated with reduced risk of non-Hodgkin lymphoma in Korean males. | 0.005005506 | 2010 | PARP1 | 1 | 226367601 | A | G |
rs114216685 | NA | 25788 | RAD54B | umls:C0024305 | CLINVAR | NA | 0.12 | NA | RAD54B | 8 | 94391640 | T | C |
rs121908689 | NA | 8438 | RAD54L | umls:C0024305 | CLINVAR | NA | 0.242367032 | NA | RAD54L | 1 | 46272758 | T | A |
rs121909775 | NA | 843 | CASP10 | umls:C0024305 | CLINVAR | NA | 0.369825446 | NA | CASP10 | 2 | 201205929 | C | A,T |
rs121912659 | NA | 7157 | TP53 | umls:C0024305 | CLINVAR | NA | 0.132539865 | NA | TP53 | 17 | 7673554 | C | A |
rs121913338 | NA | 673 | BRAF | umls:C0024305 | CLINVAR | NA | 0.242367032 | NA | BRAF | 7 | 140753354 | T | C,A |
rs121913355 | NA | 673 | BRAF | umls:C0024305 | CLINVAR | NA | 0.242367032 | NA | BRAF | 7 | 140781602 | C | T,G,A |
rs121913357 | NA | 673 | BRAF | umls:C0024305 | CLINVAR | NA | 0.242367032 | NA | BRAF | 7 | 140781603 | C | T,G,A |
rs121913499 | 20946881 | 3417 | IDH1 | umls:C0024305 | BeFree | Except for one non-Hodgkin lymphoma (NHL) patient harboring IDH1 mutation p.R132C, all IDH1 and IDH2 missense mutations were observed in patients with AML. | 0.002638474 | 2010 | IDH1 | 2 | 208248389 | G | T,A |
rs12203592 | 19396635 | 3056 | HCL1 | umls:C0024305 | BeFree | Analysis of joint effects between eye and hair color with the IRF4 rs12203592 SNP did not reveal statistically significant p-interactions although NHL risk did decline with lighter hair color and presence of the variant IRF4 rs12203592 allele, compared to those without a variant allele and with black/brown hair color. | 0.000271442 | 2009 | IRF4 | 6 | 396321 | C | T |
rs12211228 | 19390683 | 2194 | FASN | umls:C0024305 | BeFree | Accordingly, the single most significant SNPs associated with NHL were FAS rs4934436 (p-trend = 0.0024), IRF4 rs12211228 (p-trend = 0.0026), TNFSF13B rs2582869 (p-trend = 0.0055), TANK rs1921310 (p-trend = 0.0025), TNFSF7 rs16994592 (p-trend = 0.0024), and TNFRSF13C rs6002551 (p-trend = 0.0074). | 0.000542884 | 2009 | IRF4 | 6 | 408833 | G | C |
rs12711521 | 23055202 | 4155 | MBP | umls:C0024305 | BeFree | A SNP-based analysis showed that MBP rs8094402 was associated with decreased risks of overall NHL (allele risk OR = 0.72, P-trend = 0.0018), DLBCL (allele risk OR = 0.72, P-trend = 0.036), and FL (allele risk OR = 0.67, P-trend = 0.021), while MASP2 rs12711521 was associated with a decreased risk of DLBCL (allele risk OR = 0.57, P-trend = 0.0042). | 0.000271442 | 2013 | MASP2 | 1 | 11030859 | C | A |
rs12711521 | 23055202 | 10747 | MASP2 | umls:C0024305 | BeFree | A SNP-based analysis showed that MBP rs8094402 was associated with decreased risks of overall NHL (allele risk OR = 0.72, P-trend = 0.0018), DLBCL (allele risk OR = 0.72, P-trend = 0.036), and FL (allele risk OR = 0.67, P-trend = 0.021), while MASP2 rs12711521 was associated with a decreased risk of DLBCL (allele risk OR = 0.57, P-trend = 0.0042). | 0.002638474 | 2013 | MASP2 | 1 | 11030859 | C | A |
rs13113 | 17071630 | 841 | CASP8 | umls:C0024305 | BeFree | We investigated five single nucleotide polymorphisms in four key caspase genes, CASP3 [Ex8-280C>A (rs6948) and Ex8+567T>C (rs1049216)], CASP8 Ex14-271A>T (rs13113), CASP9 Ex5+32G>A (rs1052576) and CASP10 Ex3-171A>G (rs3900115) to determine whether they alter risk for non-Hodgkin lymphoma (NHL) in a population-based case-control study of women in Connecticut (461 cases and 535 controls). | 0.00764398 | 2007 | CASP8 | 2 | 201287439 | T | A |
rs13178127 | 20813000 | 7518 | XRCC4 | umls:C0024305 | BeFree | Five SNPs (BLM rs441399, RAD50 rs2237060, FAM82A2 rs2304583, ERCC3 rs4150506, and XRCC4 rs13178127) were particularly noteworthy because their gene regions were significantly associated with NHL or NHL subtypes (minP ≤ 0·05), or because of high level of statistical significance (P ≤ 0·005) and consistent findings across the three studies. | 0.002638474 | 2010 | XRCC4 | 5 | 83293613 | A | G |
rs13181 | 25422223 | 2068 | ERCC2 | umls:C0024305 | BeFree | Comprehensive assessment of associations between ERCC2 Lys751Gln/Asp312Asn polymorphisms and risk of non- Hodgkin lymphoma. | 0.012649486 | 2015 | ERCC2;KLC3 | 19 | 45351661 | T | A,G |
rs13181 | 23619945 | 672 | BRCA1 | umls:C0024305 | BeFree | Compared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes. | 0.005276948 | 2013 | ERCC2;KLC3 | 19 | 45351661 | T | A,G |
rs13181 | 23619945 | 7515 | XRCC1 | umls:C0024305 | BeFree | Compared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes. | 0.00764398 | 2013 | ERCC2;KLC3 | 19 | 45351661 | T | A,G |
rs13181 | 23619945 | 2068 | ERCC2 | umls:C0024305 | BeFree | Compared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes. | 0.012649486 | 2013 | ERCC2;KLC3 | 19 | 45351661 | T | A,G |
rs13181 | 23619945 | 7486 | WRN | umls:C0024305 | BeFree | Compared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes. | 0.00554839 | 2013 | ERCC2;KLC3 | 19 | 45351661 | T | A,G |
rs1346044 | 25178586 | 7486 | WRN | umls:C0024305 | BeFree | In addition, a significant interaction with risk of overall NHL was observed between WRN rs1346044 and hair dye use before 1980 (p(interaction) = 0.032). | 0.00554839 | 2014 | WRN;LOC105379359 | 8 | 31167138 | T | C |
rs13706 | 19101572 | 990 | CDC6 | umls:C0024305 | BeFree | Association analysis between the Cdc6 G1321A polymorphism and the risk for non-Hodgkin lymphoma and hepatocellular carcinoma. | 0.002638474 | 2009 | CDC6 | 17 | 40300899 | G | A,C |
rs1494555 | 20952689 | 7124 | TNF | umls:C0024305 | BeFree | A significant interaction with BMI was only observed for IFNGR2 (rs9808753 P(forinteraction) = .034) and IL7R (rs1494555 P(forinteraction) = .016) for NHL overall; IL7R (rs1494555 P(forinteraction) = .016) and TNF (1799724 P(forinteraction) = .031) for B-cell lymphoma; and IL5 (rs2069812 P(forinteraction) = .034) for T-cell lymphoma. | 0.049749941 | 2011 | IL7R | 5 | 35871088 | G | A |
rs161870 | 23913011 | 10840 | ALDH1L1 | umls:C0024305 | BeFree | A significantly reduced risk of NHL was associated with the homozygous TT genotype in CBS (rs234706, Ex9+33C>T) (OR = 0.51, 95 % CI 0.31-0.84), the homozygous CC genotype in MBD2 (rs603097, -2176C>T) (OR = 0.37, 95 % CI 0.17-0.79), the heterozygote AG genotype in FTHFD (rs1127717, Ex21+31A>G) (OR = 0.73, 95 % CI 0.55-0.98), and a borderline significantly reduced risk of NHL was observed for the homozygous CC genotype in MTRR (rs161870, Ex5+136T>C) (OR = 0.23, 95 % CI 0.05-1.04). | 0.00554839 | 2013 | MTRR | 5 | 7878079 | T | C |
rs161870 | 23913011 | 8932 | MBD2 | umls:C0024305 | BeFree | A significantly reduced risk of NHL was associated with the homozygous TT genotype in CBS (rs234706, Ex9+33C>T) (OR = 0.51, 95 % CI 0.31-0.84), the homozygous CC genotype in MBD2 (rs603097, -2176C>T) (OR = 0.37, 95 % CI 0.17-0.79), the heterozygote AG genotype in FTHFD (rs1127717, Ex21+31A>G) (OR = 0.73, 95 % CI 0.55-0.98), and a borderline significantly reduced risk of NHL was observed for the homozygous CC genotype in MTRR (rs161870, Ex5+136T>C) (OR = 0.23, 95 % CI 0.05-1.04). | 0.000271442 | 2013 | MTRR | 5 | 7878079 | T | C |
rs161870 | 23913011 | 4552 | MTRR | umls:C0024305 | BeFree | A significantly reduced risk of NHL was associated with the homozygous TT genotype in CBS (rs234706, Ex9+33C>T) (OR = 0.51, 95 % CI 0.31-0.84), the homozygous CC genotype in MBD2 (rs603097, -2176C>T) (OR = 0.37, 95 % CI 0.17-0.79), the heterozygote AG genotype in FTHFD (rs1127717, Ex21+31A>G) (OR = 0.73, 95 % CI 0.55-0.98), and a borderline significantly reduced risk of NHL was observed for the homozygous CC genotype in MTRR (rs161870, Ex5+136T>C) (OR = 0.23, 95 % CI 0.05-1.04). | 0.00554839 | 2013 | MTRR | 5 | 7878079 | T | C |
rs1695 | 22734843 | 2944 | GSTM1 | umls:C0024305 | BeFree | Role of polymorphisms of GSTM1, GSTT1 and GSTP1 Ile105Val in Hodgkin and non-Hodgkin lymphoma risk: a Human Genome Epidemiology (HuGE) review. | 0.02073666 | 2013 | GSTP1 | 11 | 67585218 | A | G |
rs1695 | 19899130 | 2950 | GSTP1 | umls:C0024305 | BeFree | Our data provide evidence that the GSTP1 rs1695 and the CYP1A1 rs1048943 genotypes affect the risk of NHL in Korea. | 0.023289257 | 2009 | GSTP1 | 11 | 67585218 | A | G |
rs1695 | 22734843 | 2952 | GSTT1 | umls:C0024305 | BeFree | Role of polymorphisms of GSTM1, GSTT1 and GSTP1 Ile105Val in Hodgkin and non-Hodgkin lymphoma risk: a Human Genome Epidemiology (HuGE) review. | 0.017469426 | 2013 | GSTP1 | 11 | 67585218 | A | G |
rs1695 | 19899130 | 1543 | CYP1A1 | umls:C0024305 | BeFree | Our data provide evidence that the GSTP1 rs1695 and the CYP1A1 rs1048943 genotypes affect the risk of NHL in Korea. | 0.019207698 | 2009 | GSTP1 | 11 | 67585218 | A | G |
rs1695 | 22734843 | 2950 | GSTP1 | umls:C0024305 | BeFree | Role of polymorphisms of GSTM1, GSTT1 and GSTP1 Ile105Val in Hodgkin and non-Hodgkin lymphoma risk: a Human Genome Epidemiology (HuGE) review. | 0.023289257 | 2013 | GSTP1 | 11 | 67585218 | A | G |
rs16994592 | 19390683 | 2194 | FASN | umls:C0024305 | BeFree | Accordingly, the single most significant SNPs associated with NHL were FAS rs4934436 (p-trend = 0.0024), IRF4 rs12211228 (p-trend = 0.0026), TNFSF13B rs2582869 (p-trend = 0.0055), TANK rs1921310 (p-trend = 0.0025), TNFSF7 rs16994592 (p-trend = 0.0024), and TNFRSF13C rs6002551 (p-trend = 0.0074). | 0.000542884 | 2009 | CD70 | 19 | 6586487 | T | C |
rs1785882 | 19414860 | 842 | CASP9 | umls:C0024305 | BeFree | SNP-based analysis showed that CASP8 rs6736233 (odds ratio (OR) (CG) = 1.21; OR(CC) = 2.13; P trend = .011); CASP9 rs4661636 (OR(CT) = 0.89; OR(TT) = 0.77; P trend = .011); and CASP1 rs1785882 (OR(AT) = 1.12; OR(AA) = 1.30; P trend = .0054) were significantly associated with NHL risk and consistent across studies. | 0.00764398 | 2009 | NA | 11 | 105052348 | A | T |
rs1785882 | 19414860 | 834 | CASP1 | umls:C0024305 | BeFree | SNP-based analysis showed that CASP8 rs6736233 (odds ratio (OR) (CG) = 1.21; OR(CC) = 2.13; P trend = .011); CASP9 rs4661636 (OR(CT) = 0.89; OR(TT) = 0.77; P trend = .011); and CASP1 rs1785882 (OR(AT) = 1.12; OR(AA) = 1.30; P trend = .0054) were significantly associated with NHL risk and consistent across studies. | 0.005005506 | 2009 | NA | 11 | 105052348 | A | T |
rs1799724 | 17018637 | 7124 | TNF | umls:C0024305 | BeFree | A haplotype comprising SNPs in two proinflammatory cytokines, tumor necrosis factor-alpha and lymphotoxin-alpha (rs1800629, rs361525, rs1799724, rs909253, and rs2239704), increased non-Hodgkin lymphoma risk overall (OR, 1.31; 95% CI, 1.06-1.63; P = 0.01) and notably for diffuse large B cell (OR, 1.64; 95% CI, 1.23-2.19; P = 0.0007). | 0.049749941 | 2006 | LTA;TNF | 6 | 31574705 | C | T |
rs1799724 | 17018637 | 4049 | LTA | umls:C0024305 | BeFree | A haplotype comprising SNPs in two proinflammatory cytokines, tumor necrosis factor-alpha and lymphotoxin-alpha (rs1800629, rs361525, rs1799724, rs909253, and rs2239704), increased non-Hodgkin lymphoma risk overall (OR, 1.31; 95% CI, 1.06-1.63; P = 0.01) and notably for diffuse large B cell (OR, 1.64; 95% CI, 1.23-2.19; P = 0.0007). | 0.025927731 | 2006 | LTA;TNF | 6 | 31574705 | C | T |
rs1799782 | 23619945 | 2068 | ERCC2 | umls:C0024305 | BeFree | Compared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes. | 0.012649486 | 2013 | XRCC1 | 19 | 43553422 | G | A |
rs1799782 | 23619945 | 672 | BRCA1 | umls:C0024305 | BeFree | Compared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes. | 0.005276948 | 2013 | XRCC1 | 19 | 43553422 | G | A |
rs1799782 | 23619945 | 7486 | WRN | umls:C0024305 | BeFree | Compared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes. | 0.00554839 | 2013 | XRCC1 | 19 | 43553422 | G | A |
rs1799782 | 23619945 | 7515 | XRCC1 | umls:C0024305 | BeFree | Compared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes. | 0.00764398 | 2013 | XRCC1 | 19 | 43553422 | G | A |
rs1799793 | 25422223 | 2068 | ERCC2 | umls:C0024305 | BeFree | Comprehensive assessment of associations between ERCC2 Lys751Gln/Asp312Asn polymorphisms and risk of non- Hodgkin lymphoma. | 0.012649486 | 2015 | ERCC2 | 19 | 45364001 | C | T |
rs1800629 | 17018637 | 4049 | LTA | umls:C0024305 | BeFree | A haplotype comprising SNPs in two proinflammatory cytokines, tumor necrosis factor-alpha and lymphotoxin-alpha (rs1800629, rs361525, rs1799724, rs909253, and rs2239704), increased non-Hodgkin lymphoma risk overall (OR, 1.31; 95% CI, 1.06-1.63; P = 0.01) and notably for diffuse large B cell (OR, 1.64; 95% CI, 1.23-2.19; P = 0.0007). | 0.025927731 | 2006 | TNF | 6 | 31575254 | G | A |
rs1800629 | 19654554 | 4049 | LTA | umls:C0024305 | BeFree | Two single nucleotide polymorphisms (SNPs) in adjacent genes, lymphotoxin alpha (LTA +252G, rs909253 A>G) and tumor necrosis factor (TNF -308A, rs1800629 G>A), form the G-A haplotype repeatedly associated with increased risk of non-Hodgkin lymphoma (NHL) in individuals uninfected with HIV-1. | 0.025927731 | 2009 | TNF | 6 | 31575254 | G | A |
rs1800629 | 20087644 | 7124 | TNF | umls:C0024305 | BeFree | TNF rs1800629 was associated with risk of NHL (OR 1.53, 95% confidence interval, CI, 1.06-2.19 for minor allele homozygosity), T-cell lymphoma (OR 2.54, CI 1.27-5.09) and mantle cell lymphoma (OR 2.84, CI 1.38-5.87). | 0.049749941 | 2010 | TNF | 6 | 31575254 | G | A |
rs1800629 | 19654554 | 7124 | TNF | umls:C0024305 | BeFree | Two single nucleotide polymorphisms (SNPs) in adjacent genes, lymphotoxin alpha (LTA +252G, rs909253 A>G) and tumor necrosis factor (TNF -308A, rs1800629 G>A), form the G-A haplotype repeatedly associated with increased risk of non-Hodgkin lymphoma (NHL) in individuals uninfected with HIV-1. | 0.049749941 | 2009 | TNF | 6 | 31575254 | G | A |
rs1800629 | 17018637 | 7124 | TNF | umls:C0024305 | BeFree | A haplotype comprising SNPs in two proinflammatory cytokines, tumor necrosis factor-alpha and lymphotoxin-alpha (rs1800629, rs361525, rs1799724, rs909253, and rs2239704), increased non-Hodgkin lymphoma risk overall (OR, 1.31; 95% CI, 1.06-1.63; P = 0.01) and notably for diffuse large B cell (OR, 1.64; 95% CI, 1.23-2.19; P = 0.0007). | 0.049749941 | 2006 | TNF | 6 | 31575254 | G | A |
rs1800795 | 25564959 | 3569 | IL6 | umls:C0024305 | BeFree | Given the importance of understanding the genetic variations involved in the pathogenesis of non-Hodgkin's lymphoma (NHL), this pilot study was designed to investigate the impact of CD38 (184C/G; rs6449182) and IL-6 (-174 G/C; rs1800795) gene polymorphism on susceptibility of Egyptians to diffuse large B cell lymphoma (DLBCL); major types of NHL. | 0.016002596 | 2016 | IL6;LOC541472 | 7 | 22727026 | C | G |
rs1800890 | 19573080 | 3586 | IL10 | umls:C0024305 | BeFree | We confirmed previous studies showing a polymorphism in the IL10 promoter (rs1800890/-3575T>A) to be associated with non-Hodgkin lymphoma, as this allele was found to be associated with both CLL and WM. | 0.048378919 | 2009 | IL10 | 1 | 206776020 | A | T |
rs1801181 | 23913011 | 6470 | SHMT1 | umls:C0024305 | BeFree | A borderline significantly increased risk of NHL was also observed for CBS (rs1801181, Ex13+41C>T), FTHFD (rs2305230, Ex10-40G>T), SHMT1 (rs1979277, Ex12+138C>T), and SHMT1 (rs1979276, Ex12+236T>C), and these associations appeared to be contingent on dietary nutrient intakes. | 0.127915422 | 2013 | CBS | 21 | 43060506 | G | A |
rs1801181 | 23913011 | 102724560 | LOC102724560 | umls:C0024305 | BeFree | A borderline significantly increased risk of NHL was also observed for CBS (rs1801181, Ex13+41C>T), FTHFD (rs2305230, Ex10-40G>T), SHMT1 (rs1979277, Ex12+138C>T), and SHMT1 (rs1979276, Ex12+236T>C), and these associations appeared to be contingent on dietary nutrient intakes. | 0.000814326 | 2013 | CBS | 21 | 43060506 | G | A |
rs1801195 | 23619945 | 7486 | WRN | umls:C0024305 | BeFree | Compared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes. | 0.00554839 | 2013 | WRN | 8 | 31141764 | G | T |
rs1801195 | 23619945 | 2068 | ERCC2 | umls:C0024305 | BeFree | Compared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes. | 0.012649486 | 2013 | WRN | 8 | 31141764 | G | T |
rs1801195 | 23619945 | 672 | BRCA1 | umls:C0024305 | BeFree | Compared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes. | 0.005276948 | 2013 | WRN | 8 | 31141764 | G | T |
rs1801195 | 23619945 | 7515 | XRCC1 | umls:C0024305 | BeFree | Compared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes. | 0.00764398 | 2013 | WRN | 8 | 31141764 | G | T |
rs1801274 | 17018637 | 2209 | FCGR1A | umls:C0024305 | BeFree | A functional nonsynonymous SNP in the innate immune gene Fc gamma receptor 2A (FCGR2A; rs1801274) was also associated with non-Hodgkin lymphoma; AG and AA genotypes were associated with a 1.26-fold (95% CI, 1.01-1.56) and 1.41-fold (95% CI, 1.10-1.81) increased risk, respectively (P(trend) = 0.006). | 0.000542884 | 2006 | FCGR2A | 1 | 161509955 | A | G |
rs1801274 | 17018637 | 2212 | FCGR2A | umls:C0024305 | BeFree | A functional nonsynonymous SNP in the innate immune gene Fc gamma receptor 2A (FCGR2A; rs1801274) was also associated with non-Hodgkin lymphoma; AG and AA genotypes were associated with a 1.26-fold (95% CI, 1.01-1.56) and 1.41-fold (95% CI, 1.10-1.81) increased risk, respectively (P(trend) = 0.006). | 0.01036833 | 2006 | FCGR2A | 1 | 161509955 | A | G |
rs1805087 | 15198953 | 6470 | SHMT1 | umls:C0024305 | BeFree | The polymorphisms examined and haplotypes generated included thymidylate synthase (TYMS 28-bp triple repeat [3R]-->double repeat [2R], 1494del6, IVS6 -68C>T, 1122A>G, and 1053C>T); 5,10-methylenetetrahydrofolate reductase (MTHFR 677C>T and 1298A>C); serine hydroxymethyltransferase (SHMT1 C1420T); reduced folate carrier (RFC G80A); and methionine synthase (MTR A2756G), making the present study the largest and most comprehensive to date to evaluate associations between genetic polymorphisms in folatemetabolizing genes and NHL risk. | 0.127915422 | 2004 | MTR | 1 | 236885200 | A | G |
rs1805087 | 15198953 | 6573 | SLC19A1 | umls:C0024305 | BeFree | The polymorphisms examined and haplotypes generated included thymidylate synthase (TYMS 28-bp triple repeat [3R]-->double repeat [2R], 1494del6, IVS6 -68C>T, 1122A>G, and 1053C>T); 5,10-methylenetetrahydrofolate reductase (MTHFR 677C>T and 1298A>C); serine hydroxymethyltransferase (SHMT1 C1420T); reduced folate carrier (RFC G80A); and methionine synthase (MTR A2756G), making the present study the largest and most comprehensive to date to evaluate associations between genetic polymorphisms in folatemetabolizing genes and NHL risk. | 0.005005506 | 2004 | MTR | 1 | 236885200 | A | G |
rs1921310 | 19390683 | 2194 | FASN | umls:C0024305 | BeFree | Accordingly, the single most significant SNPs associated with NHL were FAS rs4934436 (p-trend = 0.0024), IRF4 rs12211228 (p-trend = 0.0026), TNFSF13B rs2582869 (p-trend = 0.0055), TANK rs1921310 (p-trend = 0.0025), TNFSF7 rs16994592 (p-trend = 0.0024), and TNFRSF13C rs6002551 (p-trend = 0.0074). | 0.000542884 | 2009 | TANK | 2 | 161192690 | A | G |
rs1979276 | 23913011 | 6470 | SHMT1 | umls:C0024305 | BeFree | A borderline significantly increased risk of NHL was also observed for CBS (rs1801181, Ex13+41C>T), FTHFD (rs2305230, Ex10-40G>T), SHMT1 (rs1979277, Ex12+138C>T), and SHMT1 (rs1979276, Ex12+236T>C), and these associations appeared to be contingent on dietary nutrient intakes. | 0.127915422 | 2013 | SHMT1 | 17 | 18328684 | G | A |
rs1979276 | 23913011 | 102724560 | LOC102724560 | umls:C0024305 | BeFree | A borderline significantly increased risk of NHL was also observed for CBS (rs1801181, Ex13+41C>T), FTHFD (rs2305230, Ex10-40G>T), SHMT1 (rs1979277, Ex12+138C>T), and SHMT1 (rs1979276, Ex12+236T>C), and these associations appeared to be contingent on dietary nutrient intakes. | 0.000814326 | 2013 | SHMT1 | 17 | 18328684 | G | A |
rs1979277 | 15198953 | 6470 | SHMT1 | umls:C0024305 | BeFree | The polymorphisms examined and haplotypes generated included thymidylate synthase (TYMS 28-bp triple repeat [3R]-->double repeat [2R], 1494del6, IVS6 -68C>T, 1122A>G, and 1053C>T); 5,10-methylenetetrahydrofolate reductase (MTHFR 677C>T and 1298A>C); serine hydroxymethyltransferase (SHMT1 C1420T); reduced folate carrier (RFC G80A); and methionine synthase (MTR A2756G), making the present study the largest and most comprehensive to date to evaluate associations between genetic polymorphisms in folatemetabolizing genes and NHL risk. | 0.127915422 | 2004 | SHMT1 | 17 | 18328782 | G | A |
rs1979277 | 15198953 | 6573 | SLC19A1 | umls:C0024305 | BeFree | The polymorphisms examined and haplotypes generated included thymidylate synthase (TYMS 28-bp triple repeat [3R]-->double repeat [2R], 1494del6, IVS6 -68C>T, 1122A>G, and 1053C>T); 5,10-methylenetetrahydrofolate reductase (MTHFR 677C>T and 1298A>C); serine hydroxymethyltransferase (SHMT1 C1420T); reduced folate carrier (RFC G80A); and methionine synthase (MTR A2756G), making the present study the largest and most comprehensive to date to evaluate associations between genetic polymorphisms in folatemetabolizing genes and NHL risk. | 0.005005506 | 2004 | SHMT1 | 17 | 18328782 | G | A |
rs1979277 | 23913011 | 102724560 | LOC102724560 | umls:C0024305 | BeFree | A borderline significantly increased risk of NHL was also observed for CBS (rs1801181, Ex13+41C>T), FTHFD (rs2305230, Ex10-40G>T), SHMT1 (rs1979277, Ex12+138C>T), and SHMT1 (rs1979276, Ex12+236T>C), and these associations appeared to be contingent on dietary nutrient intakes. | 0.000814326 | 2013 | SHMT1 | 17 | 18328782 | G | A |
rs1979277 | 23913011 | 6470 | SHMT1 | umls:C0024305 | BeFree | A borderline significantly increased risk of NHL was also observed for CBS (rs1801181, Ex13+41C>T), FTHFD (rs2305230, Ex10-40G>T), SHMT1 (rs1979277, Ex12+138C>T), and SHMT1 (rs1979276, Ex12+236T>C), and these associations appeared to be contingent on dietary nutrient intakes. | 0.127915422 | 2013 | SHMT1 | 17 | 18328782 | G | A |
rs201765376 | 15198953 | 6573 | SLC19A1 | umls:C0024305 | BeFree | The polymorphisms examined and haplotypes generated included thymidylate synthase (TYMS 28-bp triple repeat [3R]-->double repeat [2R], 1494del6, IVS6 -68C>T, 1122A>G, and 1053C>T); 5,10-methylenetetrahydrofolate reductase (MTHFR 677C>T and 1298A>C); serine hydroxymethyltransferase (SHMT1 C1420T); reduced folate carrier (RFC G80A); and methionine synthase (MTR A2756G), making the present study the largest and most comprehensive to date to evaluate associations between genetic polymorphisms in folatemetabolizing genes and NHL risk. | 0.005005506 | 2004 | MTR | 1 | 236838504 | C | T |
rs201765376 | 15198953 | 6470 | SHMT1 | umls:C0024305 | BeFree | The polymorphisms examined and haplotypes generated included thymidylate synthase (TYMS 28-bp triple repeat [3R]-->double repeat [2R], 1494del6, IVS6 -68C>T, 1122A>G, and 1053C>T); 5,10-methylenetetrahydrofolate reductase (MTHFR 677C>T and 1298A>C); serine hydroxymethyltransferase (SHMT1 C1420T); reduced folate carrier (RFC G80A); and methionine synthase (MTR A2756G), making the present study the largest and most comprehensive to date to evaluate associations between genetic polymorphisms in folatemetabolizing genes and NHL risk. | 0.127915422 | 2004 | MTR | 1 | 236838504 | C | T |
rs20541 | 19533685 | 7412 | VCAM1 | umls:C0024305 | BeFree | Interleukin 13 (IL13) Ex4+98A>G SNP (rs20541) was associated with decreased NHL risk (OR(AG/AA) = 0.62,95% CI = 0.44-0.87, p = 0.006), as was vascular cell adhesion molecule-1, VCAM1 Ex9+149G>A SNP (rs1041163) (OR(CT) = 0.77, 95% CI = 0.54-1.10, OR(CC) = 0.35, 95% CI = 0.16-0.76, p-trend = 0.007). | 0.002638474 | 2009 | IL13 | 5 | 132660272 | A | G |
rs20541 | 19533685 | 3596 | IL13 | umls:C0024305 | BeFree | Interleukin 13 (IL13) Ex4+98A>G SNP (rs20541) was associated with decreased NHL risk (OR(AG/AA) = 0.62,95% CI = 0.44-0.87, p = 0.006), as was vascular cell adhesion molecule-1, VCAM1 Ex9+149G>A SNP (rs1041163) (OR(CT) = 0.77, 95% CI = 0.54-1.10, OR(CC) = 0.35, 95% CI = 0.16-0.76, p-trend = 0.007). | 0.000814326 | 2009 | IL13 | 5 | 132660272 | A | G |
rs2069812 | 20952689 | 7124 | TNF | umls:C0024305 | BeFree | A significant interaction with BMI was only observed for IFNGR2 (rs9808753 P(forinteraction) = .034) and IL7R (rs1494555 P(forinteraction) = .016) for NHL overall; IL7R (rs1494555 P(forinteraction) = .016) and TNF (1799724 P(forinteraction) = .031) for B-cell lymphoma; and IL5 (rs2069812 P(forinteraction) = .034) for T-cell lymphoma. | 0.049749941 | 2011 | IL5 | 5 | 132544224 | A | G |
rs2237060 | 20813000 | 7518 | XRCC4 | umls:C0024305 | BeFree | Five SNPs (BLM rs441399, RAD50 rs2237060, FAM82A2 rs2304583, ERCC3 rs4150506, and XRCC4 rs13178127) were particularly noteworthy because their gene regions were significantly associated with NHL or NHL subtypes (minP ≤ 0·05), or because of high level of statistical significance (P ≤ 0·005) and consistent findings across the three studies. | 0.002638474 | 2010 | RAD50;LOC101927761 | 5 | 132635193 | T | G |
rs2239704 | 17018637 | 4049 | LTA | umls:C0024305 | BeFree | A haplotype comprising SNPs in two proinflammatory cytokines, tumor necrosis factor-alpha and lymphotoxin-alpha (rs1800629, rs361525, rs1799724, rs909253, and rs2239704), increased non-Hodgkin lymphoma risk overall (OR, 1.31; 95% CI, 1.06-1.63; P = 0.01) and notably for diffuse large B cell (OR, 1.64; 95% CI, 1.23-2.19; P = 0.0007). | 0.025927731 | 2006 | LTA;LOC100287329 | 6 | 31572364 | A | C |
rs2239704 | 17018637 | 7124 | TNF | umls:C0024305 | BeFree | A haplotype comprising SNPs in two proinflammatory cytokines, tumor necrosis factor-alpha and lymphotoxin-alpha (rs1800629, rs361525, rs1799724, rs909253, and rs2239704), increased non-Hodgkin lymphoma risk overall (OR, 1.31; 95% CI, 1.06-1.63; P = 0.01) and notably for diffuse large B cell (OR, 1.64; 95% CI, 1.23-2.19; P = 0.0007). | 0.049749941 | 2006 | LTA;LOC100287329 | 6 | 31572364 | A | C |
rs2297518 | 16543247 | 4843 | NOS2 | umls:C0024305 | BeFree | Specifically, for nitric oxide synthase (NOS2A Ser608Leu, rs2297518) Leu/Leu homozygotes, there was a 2-fold risk increase for NHL (OR=2.2, 95% CI=1.1-4.4) (referent=Ser/Ser and Ser/Leu). | 0.005276948 | 2006 | NOS2 | 17 | 27769571 | G | A |
rs2304583 | 20813000 | 7518 | XRCC4 | umls:C0024305 | BeFree | Five SNPs (BLM rs441399, RAD50 rs2237060, FAM82A2 rs2304583, ERCC3 rs4150506, and XRCC4 rs13178127) were particularly noteworthy because their gene regions were significantly associated with NHL or NHL subtypes (minP ≤ 0·05), or because of high level of statistical significance (P ≤ 0·005) and consistent findings across the three studies. | 0.002638474 | 2010 | RMDN3 | 15 | 40739940 | A | G |
rs2305230 | 23913011 | 6470 | SHMT1 | umls:C0024305 | BeFree | A borderline significantly increased risk of NHL was also observed for CBS (rs1801181, Ex13+41C>T), FTHFD (rs2305230, Ex10-40G>T), SHMT1 (rs1979277, Ex12+138C>T), and SHMT1 (rs1979276, Ex12+236T>C), and these associations appeared to be contingent on dietary nutrient intakes. | 0.127915422 | 2013 | ALDH1L1 | 3 | 126137852 | C | A |
rs2305230 | 23913011 | 102724560 | LOC102724560 | umls:C0024305 | BeFree | A borderline significantly increased risk of NHL was also observed for CBS (rs1801181, Ex13+41C>T), FTHFD (rs2305230, Ex10-40G>T), SHMT1 (rs1979277, Ex12+138C>T), and SHMT1 (rs1979276, Ex12+236T>C), and these associations appeared to be contingent on dietary nutrient intakes. | 0.000814326 | 2013 | ALDH1L1 | 3 | 126137852 | C | A |
rs234706 | 23913011 | 10840 | ALDH1L1 | umls:C0024305 | BeFree | A significantly reduced risk of NHL was associated with the homozygous TT genotype in CBS (rs234706, Ex9+33C>T) (OR = 0.51, 95 % CI 0.31-0.84), the homozygous CC genotype in MBD2 (rs603097, -2176C>T) (OR = 0.37, 95 % CI 0.17-0.79), the heterozygote AG genotype in FTHFD (rs1127717, Ex21+31A>G) (OR = 0.73, 95 % CI 0.55-0.98), and a borderline significantly reduced risk of NHL was observed for the homozygous CC genotype in MTRR (rs161870, Ex5+136T>C) (OR = 0.23, 95 % CI 0.05-1.04). | 0.00554839 | 2013 | CBS | 21 | 43065240 | G | A |
rs234706 | 23913011 | 8932 | MBD2 | umls:C0024305 | BeFree | A significantly reduced risk of NHL was associated with the homozygous TT genotype in CBS (rs234706, Ex9+33C>T) (OR = 0.51, 95 % CI 0.31-0.84), the homozygous CC genotype in MBD2 (rs603097, -2176C>T) (OR = 0.37, 95 % CI 0.17-0.79), the heterozygote AG genotype in FTHFD (rs1127717, Ex21+31A>G) (OR = 0.73, 95 % CI 0.55-0.98), and a borderline significantly reduced risk of NHL was observed for the homozygous CC genotype in MTRR (rs161870, Ex5+136T>C) (OR = 0.23, 95 % CI 0.05-1.04). | 0.000271442 | 2013 | CBS | 21 | 43065240 | G | A |
rs234706 | 23913011 | 4552 | MTRR | umls:C0024305 | BeFree | A significantly reduced risk of NHL was associated with the homozygous TT genotype in CBS (rs234706, Ex9+33C>T) (OR = 0.51, 95 % CI 0.31-0.84), the homozygous CC genotype in MBD2 (rs603097, -2176C>T) (OR = 0.37, 95 % CI 0.17-0.79), the heterozygote AG genotype in FTHFD (rs1127717, Ex21+31A>G) (OR = 0.73, 95 % CI 0.55-0.98), and a borderline significantly reduced risk of NHL was observed for the homozygous CC genotype in MTRR (rs161870, Ex5+136T>C) (OR = 0.23, 95 % CI 0.05-1.04). | 0.00554839 | 2013 | CBS | 21 | 43065240 | G | A |
rs2582869 | 19390683 | 2194 | FASN | umls:C0024305 | BeFree | Accordingly, the single most significant SNPs associated with NHL were FAS rs4934436 (p-trend = 0.0024), IRF4 rs12211228 (p-trend = 0.0026), TNFSF13B rs2582869 (p-trend = 0.0055), TANK rs1921310 (p-trend = 0.0025), TNFSF7 rs16994592 (p-trend = 0.0024), and TNFRSF13C rs6002551 (p-trend = 0.0074). | 0.000542884 | 2009 | LOC105370354 | 13 | 108259797 | A | G |
rs2647012 | 23455380 | 3662 | IRF4 | umls:C0024305 | BeFree | Only two variants (rs872071 in IRF4 and rs2647012 in HLA class II) were significantly associated with NHL risk in Chinese, with the ORs of 1.20 (95% CI, 1.05-1.38; P = 0.009) and 1.20 (95% CI, 1.03-1.39; P = 0.018) for per allele of rs872071 and rs2647012, respectively, calculated using an additive model. | 0.001085767 | 2013 | NA | 6 | 32696681 | T | C |
rs2855429 | 21148756 | 7918 | GPANK1 | umls:C0024305 | BeFree | Accordingly, SNPs in RING1/RXRB (rs2855429), AIF1 (rs2857597), and BAT4 (rs3115667) were associated with NHL (P-trends ≤ 0.0002) and both diffuse large B-cell and follicular lymphomas (P-trends < 0.05). | 0.000271442 | 2011 | COL11A2 | 6 | 33190412 | A | C |
rs2855429 | 21148756 | 199 | AIF1 | umls:C0024305 | BeFree | Accordingly, SNPs in RING1/RXRB (rs2855429), AIF1 (rs2857597), and BAT4 (rs3115667) were associated with NHL (P-trends ≤ 0.0002) and both diffuse large B-cell and follicular lymphomas (P-trends < 0.05). | 0.002638474 | 2011 | COL11A2 | 6 | 33190412 | A | C |
rs2855429 | 21148756 | 6257 | RXRB | umls:C0024305 | BeFree | Accordingly, SNPs in RING1/RXRB (rs2855429), AIF1 (rs2857597), and BAT4 (rs3115667) were associated with NHL (P-trends ≤ 0.0002) and both diffuse large B-cell and follicular lymphomas (P-trends < 0.05). | 0.000271442 | 2011 | COL11A2 | 6 | 33190412 | A | C |
rs2855429 | 21148756 | 6015 | RING1 | umls:C0024305 | BeFree | Accordingly, SNPs in RING1/RXRB (rs2855429), AIF1 (rs2857597), and BAT4 (rs3115667) were associated with NHL (P-trends ≤ 0.0002) and both diffuse large B-cell and follicular lymphomas (P-trends < 0.05). | 0.000271442 | 2011 | COL11A2 | 6 | 33190412 | A | C |
rs2857597 | 21148756 | 7918 | GPANK1 | umls:C0024305 | BeFree | Accordingly, SNPs in RING1/RXRB (rs2855429), AIF1 (rs2857597), and BAT4 (rs3115667) were associated with NHL (P-trends ≤ 0.0002) and both diffuse large B-cell and follicular lymphomas (P-trends < 0.05). | 0.000271442 | 2011 | AIF1 | 6 | 31617223 | T | A |
rs2857597 | 21148756 | 6257 | RXRB | umls:C0024305 | BeFree | Accordingly, SNPs in RING1/RXRB (rs2855429), AIF1 (rs2857597), and BAT4 (rs3115667) were associated with NHL (P-trends ≤ 0.0002) and both diffuse large B-cell and follicular lymphomas (P-trends < 0.05). | 0.000271442 | 2011 | AIF1 | 6 | 31617223 | T | A |
rs2857597 | 21148756 | 6015 | RING1 | umls:C0024305 | BeFree | Accordingly, SNPs in RING1/RXRB (rs2855429), AIF1 (rs2857597), and BAT4 (rs3115667) were associated with NHL (P-trends ≤ 0.0002) and both diffuse large B-cell and follicular lymphomas (P-trends < 0.05). | 0.000271442 | 2011 | AIF1 | 6 | 31617223 | T | A |
rs2857597 | 21148756 | 199 | AIF1 | umls:C0024305 | BeFree | Accordingly, SNPs in RING1/RXRB (rs2855429), AIF1 (rs2857597), and BAT4 (rs3115667) were associated with NHL (P-trends ≤ 0.0002) and both diffuse large B-cell and follicular lymphomas (P-trends < 0.05). | 0.002638474 | 2011 | AIF1 | 6 | 31617223 | T | A |
rs28933375 | NA | 5551 | PRF1 | umls:C0024305 | CLINVAR | NA | 0.24 | NA | PRF1 | 10 | 70598966 | T | C |
rs28936699 | 12010812 | 843 | CASP10 | umls:C0024305 | UNIPROT | Inactivating mutations of CASP10 gene in non-Hodgkin lymphomas. | 0.369825446 | 2002 | CASP10 | 2 | 201209388 | C | T |
rs28936699 | NA | 843 | CASP10 | umls:C0024305 | CLINVAR | NA | 0.369825446 | NA | CASP10 | 2 | 201209388 | C | T |
rs3115667 | 21148756 | 7918 | GPANK1 | umls:C0024305 | BeFree | Accordingly, SNPs in RING1/RXRB (rs2855429), AIF1 (rs2857597), and BAT4 (rs3115667) were associated with NHL (P-trends ≤ 0.0002) and both diffuse large B-cell and follicular lymphomas (P-trends < 0.05). | 0.000271442 | 2011 | NA | 6 | 31675622 | T | C |
rs3115667 | 21148756 | 6257 | RXRB | umls:C0024305 | BeFree | Accordingly, SNPs in RING1/RXRB (rs2855429), AIF1 (rs2857597), and BAT4 (rs3115667) were associated with NHL (P-trends ≤ 0.0002) and both diffuse large B-cell and follicular lymphomas (P-trends < 0.05). | 0.000271442 | 2011 | NA | 6 | 31675622 | T | C |
rs3115667 | 21148756 | 199 | AIF1 | umls:C0024305 | BeFree | Accordingly, SNPs in RING1/RXRB (rs2855429), AIF1 (rs2857597), and BAT4 (rs3115667) were associated with NHL (P-trends ≤ 0.0002) and both diffuse large B-cell and follicular lymphomas (P-trends < 0.05). | 0.002638474 | 2011 | NA | 6 | 31675622 | T | C |
rs3115667 | 21148756 | 6015 | RING1 | umls:C0024305 | BeFree | Accordingly, SNPs in RING1/RXRB (rs2855429), AIF1 (rs2857597), and BAT4 (rs3115667) were associated with NHL (P-trends ≤ 0.0002) and both diffuse large B-cell and follicular lymphomas (P-trends < 0.05). | 0.000271442 | 2011 | NA | 6 | 31675622 | T | C |
rs3131379 | 24598796 | 4477 | MSMB | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.000271442 | 2014 | MSH5;MSH5-SAPCD1 | 6 | 31753256 | G | A |
rs3131379 | 24598796 | 7015 | TERT | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.000271442 | 2014 | MSH5;MSH5-SAPCD1 | 6 | 31753256 | G | A |
rs3131379 | 24598796 | 54790 | TET2 | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.000542884 | 2014 | MSH5;MSH5-SAPCD1 | 6 | 31753256 | G | A |
rs3131379 | 24598796 | 4439 | MSH5 | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.000271442 | 2014 | MSH5;MSH5-SAPCD1 | 6 | 31753256 | G | A |
rs3131379 | 24598796 | 4046 | LSP1 | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.002909916 | 2014 | MSH5;MSH5-SAPCD1 | 6 | 31753256 | G | A |
rs361525 | 17018637 | 4049 | LTA | umls:C0024305 | BeFree | A haplotype comprising SNPs in two proinflammatory cytokines, tumor necrosis factor-alpha and lymphotoxin-alpha (rs1800629, rs361525, rs1799724, rs909253, and rs2239704), increased non-Hodgkin lymphoma risk overall (OR, 1.31; 95% CI, 1.06-1.63; P = 0.01) and notably for diffuse large B cell (OR, 1.64; 95% CI, 1.23-2.19; P = 0.0007). | 0.025927731 | 2006 | TNF | 6 | 31575324 | G | A |
rs361525 | 17018637 | 7124 | TNF | umls:C0024305 | BeFree | A haplotype comprising SNPs in two proinflammatory cytokines, tumor necrosis factor-alpha and lymphotoxin-alpha (rs1800629, rs361525, rs1799724, rs909253, and rs2239704), increased non-Hodgkin lymphoma risk overall (OR, 1.31; 95% CI, 1.06-1.63; P = 0.01) and notably for diffuse large B cell (OR, 1.64; 95% CI, 1.23-2.19; P = 0.0007). | 0.049749941 | 2006 | TNF | 6 | 31575324 | G | A |
rs3813729 | 22170086 | 51279 | C1RL | umls:C0024305 | BeFree | A SNP-based analysis showed that a C>T base substitution for C1RL rs3813729 (odds ratio (OR)(CT) = 0.60, 95% confidence interval (CI) = 0.42-0.87, P(trend) = 0.0062) was associated with a decreased risk of overall NHL, as well as for DLBCL (OR(CT) = 0.39, 95% CI = 0.20-0.73; P(trend) = 0.0034). | 0.002638474 | 2012 | NA | NA | NA | NA | NA |
rs3817198 | 24598796 | 4046 | LSP1 | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.002909916 | 2014 | LSP1 | 11 | 1887776 | T | C |
rs3817198 | 24598796 | 7015 | TERT | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.000271442 | 2014 | LSP1 | 11 | 1887776 | T | C |
rs3817198 | 24598796 | 4477 | MSMB | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.000271442 | 2014 | LSP1 | 11 | 1887776 | T | C |
rs3817198 | 24598796 | 54790 | TET2 | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.000542884 | 2014 | LSP1 | 11 | 1887776 | T | C |
rs3817198 | 24598796 | 4439 | MSH5 | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.000271442 | 2014 | LSP1 | 11 | 1887776 | T | C |
rs386514057 | 15198953 | 6573 | SLC19A1 | umls:C0024305 | BeFree | The polymorphisms examined and haplotypes generated included thymidylate synthase (TYMS 28-bp triple repeat [3R]-->double repeat [2R], 1494del6, IVS6 -68C>T, 1122A>G, and 1053C>T); 5,10-methylenetetrahydrofolate reductase (MTHFR 677C>T and 1298A>C); serine hydroxymethyltransferase (SHMT1 C1420T); reduced folate carrier (RFC G80A); and methionine synthase (MTR A2756G), making the present study the largest and most comprehensive to date to evaluate associations between genetic polymorphisms in folatemetabolizing genes and NHL risk. | 0.005005506 | 2004 | NA | NA | NA | NA | NA |
rs386514057 | 15198953 | 6470 | SHMT1 | umls:C0024305 | BeFree | The polymorphisms examined and haplotypes generated included thymidylate synthase (TYMS 28-bp triple repeat [3R]-->double repeat [2R], 1494del6, IVS6 -68C>T, 1122A>G, and 1053C>T); 5,10-methylenetetrahydrofolate reductase (MTHFR 677C>T and 1298A>C); serine hydroxymethyltransferase (SHMT1 C1420T); reduced folate carrier (RFC G80A); and methionine synthase (MTR A2756G), making the present study the largest and most comprehensive to date to evaluate associations between genetic polymorphisms in folatemetabolizing genes and NHL risk. | 0.127915422 | 2004 | NA | NA | NA | NA | NA |
rs3900115 | 17071630 | 841 | CASP8 | umls:C0024305 | BeFree | We investigated five single nucleotide polymorphisms in four key caspase genes, CASP3 [Ex8-280C>A (rs6948) and Ex8+567T>C (rs1049216)], CASP8 Ex14-271A>T (rs13113), CASP9 Ex5+32G>A (rs1052576) and CASP10 Ex3-171A>G (rs3900115) to determine whether they alter risk for non-Hodgkin lymphoma (NHL) in a population-based case-control study of women in Connecticut (461 cases and 535 controls). | 0.00764398 | 2007 | CASP10 | 2 | 201185954 | A | G |
rs397507444 | 25146845 | 4524 | MTHFR | umls:C0024305 | BeFree | Association of MTHFR C677T and A1298C polymorphisms with non-Hodgkin lymphoma susceptibility: evidence from a meta-analysis. | 0.136916611 | 2014 | MTHFR | 1 | 11794407 | T | G |
rs397507444 | 18432505 | 4524 | MTHFR | umls:C0024305 | BeFree | This is the first reported case of intracardiac thrombosis with MTHFR A1298C and factor XIII V34L mutations together with granulomatous reaction in non-Hodgkin lymphoma. | 0.136916611 | 2008 | MTHFR | 1 | 11794407 | T | G |
rs397507444 | 19391036 | 4524 | MTHFR | umls:C0024305 | BeFree | Methylenetetrahydrofolate reductase C677T and A1298C gene polymorphisms and therapy-related toxicity in children treated for acute lymphoblastic leukemia and non-Hodgkin lymphoma. | 0.136916611 | 2009 | MTHFR | 1 | 11794407 | T | G |
rs398122800 | NA | 843 | CASP10 | umls:C0024305 | CLINVAR | NA | 0.369825446 | NA | CASP10 | 2 | 201209189 | - | A |
rs401681 | 24598796 | 54790 | TET2 | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.000542884 | 2014 | CLPTM1L | 5 | 1321972 | C | T |
rs401681 | 24598796 | 4477 | MSMB | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.000271442 | 2014 | CLPTM1L | 5 | 1321972 | C | T |
rs401681 | 24598796 | 4046 | LSP1 | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.002909916 | 2014 | CLPTM1L | 5 | 1321972 | C | T |
rs401681 | 24598796 | 4439 | MSH5 | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.000271442 | 2014 | CLPTM1L | 5 | 1321972 | C | T |
rs401681 | 24598796 | 7015 | TERT | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.000271442 | 2014 | CLPTM1L | 5 | 1321972 | C | T |
rs4150506 | 20813000 | 7518 | XRCC4 | umls:C0024305 | BeFree | Five SNPs (BLM rs441399, RAD50 rs2237060, FAM82A2 rs2304583, ERCC3 rs4150506, and XRCC4 rs13178127) were particularly noteworthy because their gene regions were significantly associated with NHL or NHL subtypes (minP ≤ 0·05), or because of high level of statistical significance (P ≤ 0·005) and consistent findings across the three studies. | 0.002638474 | 2010 | ERCC3 | 2 | 127262970 | G | A |
rs4245739 | 25203442 | 7157 | TP53 | umls:C0024305 | BeFree | The functional TP53 rs1042522 and MDM4 rs4245739 genetic variants contribute to Non-Hodgkin lymphoma risk. | 0.132539865 | 2014 | MDM4 | 1 | 204549714 | C | A |
rs4245739 | 25203442 | 4194 | MDM4 | umls:C0024305 | BeFree | The functional TP53 rs1042522 and MDM4 rs4245739 genetic variants contribute to Non-Hodgkin lymphoma risk. | 0.000271442 | 2014 | MDM4 | 1 | 204549714 | C | A |
rs441399 | 20813000 | 7518 | XRCC4 | umls:C0024305 | BeFree | Five SNPs (BLM rs441399, RAD50 rs2237060, FAM82A2 rs2304583, ERCC3 rs4150506, and XRCC4 rs13178127) were particularly noteworthy because their gene regions were significantly associated with NHL or NHL subtypes (minP ≤ 0·05), or because of high level of statistical significance (P ≤ 0·005) and consistent findings across the three studies. | 0.002638474 | 2010 | NA | 15 | 90822992 | G | A |
rs4661636 | 19414860 | 834 | CASP1 | umls:C0024305 | BeFree | SNP-based analysis showed that CASP8 rs6736233 (odds ratio (OR) (CG) = 1.21; OR(CC) = 2.13; P trend = .011); CASP9 rs4661636 (OR(CT) = 0.89; OR(TT) = 0.77; P trend = .011); and CASP1 rs1785882 (OR(AT) = 1.12; OR(AA) = 1.30; P trend = .0054) were significantly associated with NHL risk and consistent across studies. | 0.005005506 | 2009 | CASP9 | 1 | 15496566 | C | T |
rs4661636 | 19414860 | 842 | CASP9 | umls:C0024305 | BeFree | SNP-based analysis showed that CASP8 rs6736233 (odds ratio (OR) (CG) = 1.21; OR(CC) = 2.13; P trend = .011); CASP9 rs4661636 (OR(CT) = 0.89; OR(TT) = 0.77; P trend = .011); and CASP1 rs1785882 (OR(AT) = 1.12; OR(AA) = 1.30; P trend = .0054) were significantly associated with NHL risk and consistent across studies. | 0.00764398 | 2009 | CASP9 | 1 | 15496566 | C | T |
rs4934436 | 19390683 | 2194 | FASN | umls:C0024305 | BeFree | Accordingly, the single most significant SNPs associated with NHL were FAS rs4934436 (p-trend = 0.0024), IRF4 rs12211228 (p-trend = 0.0026), TNFSF13B rs2582869 (p-trend = 0.0055), TANK rs1921310 (p-trend = 0.0025), TNFSF7 rs16994592 (p-trend = 0.0024), and TNFRSF13C rs6002551 (p-trend = 0.0074). | 0.000542884 | 2009 | NA | 10 | 89023563 | C | T |
rs4975616 | 24598796 | 7015 | TERT | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.000271442 | 2014 | NA | 5 | 1315545 | G | A |
rs4975616 | 24598796 | 4477 | MSMB | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.000271442 | 2014 | NA | 5 | 1315545 | G | A |
rs4975616 | 24598796 | 4439 | MSH5 | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.000271442 | 2014 | NA | 5 | 1315545 | G | A |
rs4975616 | 24598796 | 54790 | TET2 | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.000542884 | 2014 | NA | 5 | 1315545 | G | A |
rs4975616 | 24598796 | 4046 | LSP1 | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.002909916 | 2014 | NA | 5 | 1315545 | G | A |
rs5743836 | 21866115 | 54106 | TLR9 | umls:C0024305 | BeFree | The rs5743836 polymorphism in TLR9 confers a population-based increased risk of non-Hodgkin lymphoma. | 0.000271442 | 2012 | TLR9 | 3 | 52226766 | A | G |
rs6002551 | 19390683 | 2194 | FASN | umls:C0024305 | BeFree | Accordingly, the single most significant SNPs associated with NHL were FAS rs4934436 (p-trend = 0.0024), IRF4 rs12211228 (p-trend = 0.0026), TNFSF13B rs2582869 (p-trend = 0.0055), TANK rs1921310 (p-trend = 0.0025), TNFSF7 rs16994592 (p-trend = 0.0024), and TNFRSF13C rs6002551 (p-trend = 0.0074). | 0.000542884 | 2009 | CENPM | 22 | 41942148 | G | A |
rs603097 | 23913011 | 8932 | MBD2 | umls:C0024305 | BeFree | A significantly reduced risk of NHL was associated with the homozygous TT genotype in CBS (rs234706, Ex9+33C>T) (OR = 0.51, 95 % CI 0.31-0.84), the homozygous CC genotype in MBD2 (rs603097, -2176C>T) (OR = 0.37, 95 % CI 0.17-0.79), the heterozygote AG genotype in FTHFD (rs1127717, Ex21+31A>G) (OR = 0.73, 95 % CI 0.55-0.98), and a borderline significantly reduced risk of NHL was observed for the homozygous CC genotype in MTRR (rs161870, Ex5+136T>C) (OR = 0.23, 95 % CI 0.05-1.04). | 0.000271442 | 2013 | MBD2 | 18 | 54226736 | G | A |
rs603097 | 23913011 | 10840 | ALDH1L1 | umls:C0024305 | BeFree | A significantly reduced risk of NHL was associated with the homozygous TT genotype in CBS (rs234706, Ex9+33C>T) (OR = 0.51, 95 % CI 0.31-0.84), the homozygous CC genotype in MBD2 (rs603097, -2176C>T) (OR = 0.37, 95 % CI 0.17-0.79), the heterozygote AG genotype in FTHFD (rs1127717, Ex21+31A>G) (OR = 0.73, 95 % CI 0.55-0.98), and a borderline significantly reduced risk of NHL was observed for the homozygous CC genotype in MTRR (rs161870, Ex5+136T>C) (OR = 0.23, 95 % CI 0.05-1.04). | 0.00554839 | 2013 | MBD2 | 18 | 54226736 | G | A |
rs603097 | 23913011 | 4552 | MTRR | umls:C0024305 | BeFree | A significantly reduced risk of NHL was associated with the homozygous TT genotype in CBS (rs234706, Ex9+33C>T) (OR = 0.51, 95 % CI 0.31-0.84), the homozygous CC genotype in MBD2 (rs603097, -2176C>T) (OR = 0.37, 95 % CI 0.17-0.79), the heterozygote AG genotype in FTHFD (rs1127717, Ex21+31A>G) (OR = 0.73, 95 % CI 0.55-0.98), and a borderline significantly reduced risk of NHL was observed for the homozygous CC genotype in MTRR (rs161870, Ex5+136T>C) (OR = 0.23, 95 % CI 0.05-1.04). | 0.00554839 | 2013 | MBD2 | 18 | 54226736 | G | A |
rs63750042 | 17601929 | 4436 | MSH2 | umls:C0024305 | BeFree | We report homozygous truncating mutations in the mismatch repair gene MSH2 (226C-->T; Q76X) in three siblings who each developed T-cell NHL in early childhood. | 0.01372144 | 2007 | MSH2 | 2 | 47408415 | C | G,T |
rs6449182 | 25564959 | 3569 | IL6 | umls:C0024305 | BeFree | Given the importance of understanding the genetic variations involved in the pathogenesis of non-Hodgkin's lymphoma (NHL), this pilot study was designed to investigate the impact of CD38 (184C/G; rs6449182) and IL-6 (-174 G/C; rs1800795) gene polymorphism on susceptibility of Egyptians to diffuse large B cell lymphoma (DLBCL); major types of NHL. | 0.016002596 | 2016 | CD38 | 4 | 15778830 | C | G |
rs6736233 | 19414860 | 834 | CASP1 | umls:C0024305 | BeFree | SNP-based analysis showed that CASP8 rs6736233 (odds ratio (OR) (CG) = 1.21; OR(CC) = 2.13; P trend = .011); CASP9 rs4661636 (OR(CT) = 0.89; OR(TT) = 0.77; P trend = .011); and CASP1 rs1785882 (OR(AT) = 1.12; OR(AA) = 1.30; P trend = .0054) were significantly associated with NHL risk and consistent across studies. | 0.005005506 | 2009 | CASP8 | 2 | 201254251 | G | C |
rs6736233 | 19414860 | 842 | CASP9 | umls:C0024305 | BeFree | SNP-based analysis showed that CASP8 rs6736233 (odds ratio (OR) (CG) = 1.21; OR(CC) = 2.13; P trend = .011); CASP9 rs4661636 (OR(CT) = 0.89; OR(TT) = 0.77; P trend = .011); and CASP1 rs1785882 (OR(AT) = 1.12; OR(AA) = 1.30; P trend = .0054) were significantly associated with NHL risk and consistent across studies. | 0.00764398 | 2009 | CASP8 | 2 | 201254251 | G | C |
rs6948 | 17071630 | 841 | CASP8 | umls:C0024305 | BeFree | We investigated five single nucleotide polymorphisms in four key caspase genes, CASP3 [Ex8-280C>A (rs6948) and Ex8+567T>C (rs1049216)], CASP8 Ex14-271A>T (rs13113), CASP9 Ex5+32G>A (rs1052576) and CASP10 Ex3-171A>G (rs3900115) to determine whether they alter risk for non-Hodgkin lymphoma (NHL) in a population-based case-control study of women in Connecticut (461 cases and 535 controls). | 0.00764398 | 2007 | CASP3 | 4 | 184627976 | G | T |
rs7679673 | 24598796 | 54790 | TET2 | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.000542884 | 2014 | NA | 4 | 105140377 | C | A |
rs7679673 | 24598796 | 4439 | MSH5 | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.000271442 | 2014 | NA | 4 | 105140377 | C | A |
rs7679673 | 24598796 | 7015 | TERT | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.000271442 | 2014 | NA | 4 | 105140377 | C | A |
rs7679673 | 24598796 | 4046 | LSP1 | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.002909916 | 2014 | NA | 4 | 105140377 | C | A |
rs7679673 | 24598796 | 4477 | MSMB | umls:C0024305 | BeFree | In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, including variants for lung (rs401681 in TERT: OR per C allele=0.89, p=3.7 × E-03; rs4975616 in TERT: OR per A allele=0.90, p=0.01; rs3131379 in MSH5: OR per T allele=1.16, p=0.03), prostate (rs7679673 in TET2: OR per C allele=0.89, p=5.7 × E-03; rs10993994 in MSMB: OR per T allele=1.09, p=0.04), and breast (rs3817198 in LSP1: OR per C allele=1.12, p=0.01) cancers, but none of these associations remained significant after multiple test correction. | 0.000271442 | 2014 | NA | 4 | 105140377 | C | A |
rs799917 | 23619945 | 7515 | XRCC1 | umls:C0024305 | BeFree | Compared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes. | 0.00764398 | 2013 | BRCA1 | 17 | 43092919 | G | T,C,A |
rs799917 | 23619945 | 672 | BRCA1 | umls:C0024305 | BeFree | Compared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes. | 0.005276948 | 2013 | BRCA1 | 17 | 43092919 | G | T,C,A |
rs799917 | 23619945 | 2068 | ERCC2 | umls:C0024305 | BeFree | Compared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes. | 0.012649486 | 2013 | BRCA1 | 17 | 43092919 | G | T,C,A |
rs799917 | 23619945 | 7486 | WRN | umls:C0024305 | BeFree | Compared to those with BMI <25, women with BMI ≥25 had significantly increased risk of NHL among women who carried BRCA1 (rs799917) CT/TT, ERCC2 (rs13181) AA, XRCC1 (rs1799782) CC, and WRN (rs1801195) GG genotypes, but no increase in NHL risk among women who carried BRCA1 CC, ERCC2 AC/CC, XRCC1 CT/TT, and WRN GT/TT genotypes. | 0.00554839 | 2013 | BRCA1 | 17 | 43092919 | G | T,C,A |
rs8094402 | 23055202 | 4155 | MBP | umls:C0024305 | BeFree | A SNP-based analysis showed that MBP rs8094402 was associated with decreased risks of overall NHL (allele risk OR = 0.72, P-trend = 0.0018), DLBCL (allele risk OR = 0.72, P-trend = 0.036), and FL (allele risk OR = 0.67, P-trend = 0.021), while MASP2 rs12711521 was associated with a decreased risk of DLBCL (allele risk OR = 0.57, P-trend = 0.0042). | 0.000271442 | 2013 | MBP | 18 | 76995493 | A | G |
rs8094402 | 23055202 | 10747 | MASP2 | umls:C0024305 | BeFree | A SNP-based analysis showed that MBP rs8094402 was associated with decreased risks of overall NHL (allele risk OR = 0.72, P-trend = 0.0018), DLBCL (allele risk OR = 0.72, P-trend = 0.036), and FL (allele risk OR = 0.67, P-trend = 0.021), while MASP2 rs12711521 was associated with a decreased risk of DLBCL (allele risk OR = 0.57, P-trend = 0.0042). | 0.002638474 | 2013 | MBP | 18 | 76995493 | A | G |
rs872071 | 23455380 | 3662 | IRF4 | umls:C0024305 | BeFree | Only two variants (rs872071 in IRF4 and rs2647012 in HLA class II) were significantly associated with NHL risk in Chinese, with the ORs of 1.20 (95% CI, 1.05-1.38; P = 0.009) and 1.20 (95% CI, 1.03-1.39; P = 0.018) for per allele of rs872071 and rs2647012, respectively, calculated using an additive model. | 0.001085767 | 2013 | IRF4 | 6 | 411064 | A | G |
rs909253 | 17018637 | 7124 | TNF | umls:C0024305 | BeFree | A haplotype comprising SNPs in two proinflammatory cytokines, tumor necrosis factor-alpha and lymphotoxin-alpha (rs1800629, rs361525, rs1799724, rs909253, and rs2239704), increased non-Hodgkin lymphoma risk overall (OR, 1.31; 95% CI, 1.06-1.63; P = 0.01) and notably for diffuse large B cell (OR, 1.64; 95% CI, 1.23-2.19; P = 0.0007). | 0.049749941 | 2006 | LTA;LOC100287329 | 6 | 31572536 | A | G |
rs909253 | 19654554 | 7124 | TNF | umls:C0024305 | BeFree | Two single nucleotide polymorphisms (SNPs) in adjacent genes, lymphotoxin alpha (LTA +252G, rs909253 A>G) and tumor necrosis factor (TNF -308A, rs1800629 G>A), form the G-A haplotype repeatedly associated with increased risk of non-Hodgkin lymphoma (NHL) in individuals uninfected with HIV-1. | 0.049749941 | 2009 | LTA;LOC100287329 | 6 | 31572536 | A | G |
rs909253 | 17018637 | 4049 | LTA | umls:C0024305 | BeFree | A haplotype comprising SNPs in two proinflammatory cytokines, tumor necrosis factor-alpha and lymphotoxin-alpha (rs1800629, rs361525, rs1799724, rs909253, and rs2239704), increased non-Hodgkin lymphoma risk overall (OR, 1.31; 95% CI, 1.06-1.63; P = 0.01) and notably for diffuse large B cell (OR, 1.64; 95% CI, 1.23-2.19; P = 0.0007). | 0.025927731 | 2006 | LTA;LOC100287329 | 6 | 31572536 | A | G |
rs909253 | 19654554 | 4049 | LTA | umls:C0024305 | BeFree | Two single nucleotide polymorphisms (SNPs) in adjacent genes, lymphotoxin alpha (LTA +252G, rs909253 A>G) and tumor necrosis factor (TNF -308A, rs1800629 G>A), form the G-A haplotype repeatedly associated with increased risk of non-Hodgkin lymphoma (NHL) in individuals uninfected with HIV-1. | 0.025927731 | 2009 | LTA;LOC100287329 | 6 | 31572536 | A | G |
rs9808753 | 20952689 | 7124 | TNF | umls:C0024305 | BeFree | A significant interaction with BMI was only observed for IFNGR2 (rs9808753 P(forinteraction) = .034) and IL7R (rs1494555 P(forinteraction) = .016) for NHL overall; IL7R (rs1494555 P(forinteraction) = .016) and TNF (1799724 P(forinteraction) = .031) for B-cell lymphoma; and IL5 (rs2069812 P(forinteraction) = .034) for T-cell lymphoma. | 0.049749941 | 2011 | IFNGR2 | 21 | 33415005 | A | G |
GWASdb Annotation(Total Genotypes:4) | |||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Chr | Pos | SNP_Id | RefGene | EnsemblGene | ENCODE_Factor | ENCODE_TFBS | Chromosome_interaction | GTEx_eQTL | SNP_TFBS_affinity_GWAS3D | SNP_miRNA_target_affinity_PolymiRTS | SNP_splicing_effect_Skippy | SNP_splicing_effect_MutPred_Splice | SNP_ns_protein_effect_dbNSFP | SNP_syn_effect_Silva | SNP_phosphorylation_effect_PhosSNP | PhastCons_score | PhyloP_score | GERP++_RS | Segway_state | Ancestral_allele | ESP_AF | ESP_AFR | ESP_AFR | ESP_EUR | TG_ASN | TG_AMR | TG_AFR | TG_EUR | Type | Consequence | bStatistic | EncH3K27Ac | EncH3K4Me1 | EncH3K4Me3 | EncNucleo | OMIM | Clinvar |
20 | 62297802 | rs6011002 | NM_016434,RTEL1 | NM_032957,RTEL1 | NR_037882,RTEL1-TNFRSF6B | ENST00000318100,ENSG00000026036 | ENST00000370018,ENSG00000026036 | ENST00000508582,ENSG00000026036 | ENST00000360203,ENSG00000026036 | ENST00000356810,ENSG00000026036 | ENST00000492259,ENSG00000026036 | ENST00000370006,ENSG00000026036 | ENST00000342852,ENSG00000026036 | ENST00000482936,ENSG00000026036 | ENST00000463361,ENSG00000026036 | NA | NA | chr20,62290001,62300000,chr20,62310001,62320000,26,Hi-C | chr20,62290001,62300000,chr20,62190001,62200000,28,Hi-C | chr20,62290001,62300000,chr20,62480001,62490000,4,Hi-C | chr20,62290001,62300000,chr9,102010001,102020000,5,Hi-C | chr20,62290001,62300000,chr20,61710001,61720000,5,Hi-C | chr20,62290001,62300000,chr1,205110001,205120000,5,Hi-C | chr20,62290001,62300000,chr20,62310001,62320000,7,Hi-C | chr20,62290001,62300000,chr20,62320001,62330000,7,Hi-C | chr20,62290001,62300000,chr20,62140001,62150000,9,Hi-C | NA | LM23,1.5964 | LM44,2.5795 | LM73,5.8525 | LM146,1.4055 | LM159,2.9019 | NA | NA | NA | NA | NA |
20 | 62309839 | rs6010620 | NM_016434,RTEL1 | NM_032957,RTEL1 | NR_037882,RTEL1-TNFRSF6B | ENST00000318100,ENSG00000026036 | ENST00000370018,ENSG00000026036 | ENST00000508582,ENSG00000026036 | ENST00000360203,ENSG00000026036 | ENST00000492259,ENSG00000026036 | ENST00000370006,ENSG00000026036 | ENST00000342852,ENSG00000026036 | ENST00000482936,ENSG00000026036 | MCV-1 | TFP.EGR1 | NA | chr20,62300001,62310000,chr20,62690001,62700000,32,Hi-C | chr20,62300001,62310000,chr22,29420001,29430000,5,Hi-C | chr20,62300001,62310000,chr20,62540001,62550000,6,Hi-C | NA | Aft1-primary,7.9057 | Asg1-DBD-primary,1.7781 | Cbf1-primary,1.7474 | Cbf1-primary,1.7474 | Fhl1-DBD-primary,1.4045 | NA | NA | NA | NA | NA | NA | 0.002 | 0.766 | 0.876 | TF2 | G | NA |
20 | 62312299 | rs2297440 | NM_016434,RTEL1 | NM_032957,RTEL1 | NR_037882,RTEL1-TNFRSF6B | ENST00000318100,ENSG00000026036 | ENST00000370018,ENSG00000026036 | ENST00000508582,ENSG00000026036 | ENST00000360203,ENSG00000026036 | ENST00000492259,ENSG00000026036 | ENST00000370006,ENSG00000026036 | ENST00000342852,ENSG00000026036 | ENST00000482936,ENSG00000026036 | NA | NA | chr20,62310001,62320000,chr20,62660001,62670000,25,Hi-C | chr20,62310001,62320000,chr20,62330001,62340000,26,Hi-C | chr20,62310001,62320000,chr20,62290001,62300000,26,Hi-C | chr20,62310001,62320000,chr20,60980001,60990000,35,Hi-C | chr20,62310001,62320000,chrX,88580001,88590000,64,Hi-C | chr20,62310001,62320000,chr17,870001,880000,6,Hi-C | chr20,62310001,62320000,chr4,39650001,39660000,6,Hi-C | chr20,62310001,62320000,chr20,62010001,62020000,15,Hi-C | chr20,62310001,62320000,chr20,62290001,62300000,7,Hi-C | chr20,62310001,62320000,chr22,50640001,50650000,7,Hi-C | chr20,62310001,62320000,chr12,84810001,84820000,7,Hi-C | NA | Aro80-primary,1.3536 | Leu3-primary,8.4676 | Mig3-primary,1.8306 | Rhox11_1765,2.7383 | Rhox11_2205,2.9881 | NA | NA | NA | NA | NA |
20 | 62318220 | rs4809324 | NM_016434,RTEL1 | NM_032957,RTEL1 | NR_037882,RTEL1-TNFRSF6B | ENST00000318100,ENSG00000026036 | ENST00000370018,ENSG00000026036 | ENST00000508582,ENSG00000026036 | ENST00000360203,ENSG00000026036 | ENST00000492259,ENSG00000026036 | ENST00000370006,ENSG00000026036 | ENST00000342852,ENSG00000026036 | ENST00000482936,ENSG00000026036 | ENST00000480273,ENSG00000026036 | TFP.SMARCB1 | TFP.STAT1 | TFP.USF2 | CHMM | TFP.SMC3 | TFP.FOS | TFP.GTF2F1 | TFP.E2F6 | TFP.TAF1 | TFP.MYC | TFP.STAT3 | TFP.MAX | TFP.ELF1 | TFP.E2F1 | MCV-73 | TFP.EGR1 | NA | chr20,62310001,62320000,chr20,62660001,62670000,25,Hi-C | chr20,62310001,62320000,chr20,62330001,62340000,26,Hi-C | chr20,62310001,62320000,chr20,62290001,62300000,26,Hi-C | chr20,62310001,62320000,chr20,60980001,60990000,35,Hi-C | chr20,62310001,62320000,chrX,88580001,88590000,64,Hi-C | chr20,62310001,62320000,chr17,870001,880000,6,Hi-C |
GWASdb Snp Trait(Total Genotypes:0) | |
---|---|
(Waiting for update.) |
Mapped by lexical matching(Total Items:0) |
---|
(Waiting for update.) |
Mapped by homologous gene(Total Items:0) |
---|
(Waiting for update.) |
Chemical(Total Drugs:27) | |||||||||
---|---|---|---|---|---|---|---|---|---|
CUI | ChemicalName | ChemicalID | CasRN | DiseaseName | DiseaseID | DirectEvidence | PubMedIDs | ||
C0024305 | allopurinol | D000493 | 315-30-0 | lymphoma, non-hodgkin | MESH:D008228 | therapeutic | 2872506 | ||
C0024305 | amifostine | D004999 | 20537-88-6 | lymphoma, non-hodgkin | MESH:D008228 | therapeutic | 11335791 | ||
C0024305 | bleomycin | D001761 | 11056-06-7 | lymphoma, non-hodgkin | MESH:D008228 | therapeutic | 12172056 | ||
C0024305 | busulfan | D002066 | 55-98-1 | lymphoma, non-hodgkin | MESH:D008228 | therapeutic | 10955873 | ||
C0024305 | chlorambucil | D002699 | 305-03-3 | lymphoma, non-hodgkin | MESH:D008228 | therapeutic | 12512972 | ||
C0024305 | cyclophosphamide | D003520 | 50-18-0 | lymphoma, non-hodgkin | MESH:D008228 | therapeutic | 11911406 | ||
C0024305 | calcitriol | D002117 | 32222-06-3 | lymphoma, non-hodgkin | MESH:D008228 | marker/mechanism | 2261743 | ||
C0024305 | epirubicin | D015251 | 56420-45-2 | lymphoma, non-hodgkin | MESH:D008228 | therapeutic | 1617662 | ||
C0024305 | leucovorin | D002955 | 1958/5/9 | lymphoma, non-hodgkin | MESH:D008228 | therapeutic | 12172056 | ||
C0024305 | gemcitabine | C056507 | 103882-84-4 | lymphoma, non-hodgkin | MESH:D008228 | therapeutic | 16467107 | ||
C0024305 | ifosfamide | D007069 | 3778-73-2 | lymphoma, non-hodgkin | MESH:D008228 | therapeutic | 3132591 | ||
C0024305 | lenalidomide | C467567 | - | lymphoma, non-hodgkin | MESH:D008228 | therapeutic | 18217897 | ||
C0024305 | lidocaine | D008012 | 137-58-6 | lymphoma, non-hodgkin | MESH:D008228 | marker/mechanism | 8834551 | ||
C0024305 | lindane | D001556 | 58-89-9 | lymphoma, non-hodgkin | MESH:D008228 | marker/mechanism | 11700263 | ||
C0024305 | melphalan | D008558 | 148-82-3 | lymphoma, non-hodgkin | MESH:D008228 | therapeutic | 10955873 | ||
C0024305 | meprobamate | D008620 | 57-53-4 | lymphoma, non-hodgkin | MESH:D008228 | marker/mechanism | 8834551 | ||
C0024305 | mesna | D015080 | 19767-45-4 | lymphoma, non-hodgkin | MESH:D008228 | therapeutic | 11486401 | ||
C0024305 | methotrexate | D008727 | 1959/5/2 | lymphoma, non-hodgkin | MESH:D008228 | therapeutic | 12172056 | ||
C0024305 | mitoxantrone | D008942 | 65271-80-9 | lymphoma, non-hodgkin | MESH:D008228 | therapeutic | 1617662 | ||
C0024305 | paclitaxel | D017239 | - | lymphoma, non-hodgkin | MESH:D008228 | therapeutic | 10800167 | ||
C0024305 | pegfilgrastim | C455861 | - | lymphoma, non-hodgkin | MESH:D008228 | therapeutic | 14565651 | ||
C0024305 | phenytoin | D010672 | 57-41-0 | lymphoma, non-hodgkin | MESH:D008228 | marker/mechanism | 7336147 | ||
C0024305 | teniposide | D013713 | 29767-20-2 | lymphoma, non-hodgkin | MESH:D008228 | therapeutic | 4609765 | ||
C0024305 | thalidomide | D013792 | 50-35-1 | lymphoma, non-hodgkin | MESH:D008228 | therapeutic | 17408102 | ||
C0024305 | thiotepa | D013852 | 52-24-4 | lymphoma, non-hodgkin | MESH:D008228 | therapeutic | 10955873 | ||
C0024305 | vincristine | D014750 | - | lymphoma, non-hodgkin | MESH:D008228 | therapeutic | 12172056 | ||
C0024305 | vindesine | D014751 | 53643-48-4 | lymphoma, non-hodgkin | MESH:D008228 | therapeutic | 3327022 |
FDA approved drug and dosage information(Total Drugs:2) | ||||||||
---|---|---|---|---|---|---|---|---|
DiseaseID | Drug_name | active_ingredients | strength | Dosage Form/Route | Marketing Status | TE code | RLD | RS |
MESH:D008228 | calcijex | calcitriol | 0.001MG/ML Federal Register determination that product was not discontinued or withdrawn for safety or efficacy reasons | INJECTABLE;INJECTION | Discontinued | None | Yes | No |
MESH:D008228 | busulfex | busulfan | 6MG/ML | INJECTABLE;INJECTION | Prescription | AP | Yes | Yes |
FDA labeling changes(Total Drugs:2) | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
DiseaseID | Pediatric_Labeling_Date | Trade_Name | Generic_Name_or_Proper_Name | Indications Studied | Label Changes Summary | Product Labeling | BPCA(B) | PREA(P) | BPCA(B) and PREA(P) | Pediatric Rule (R) | Sponsor | Pediatric Exclusivity Granted Date | NNPS |
MESH:D008228 | 11/16/2001 | calcijex | calcitriol | Management of hypocalcemia in patients undergoing chronic renal dialysis | The safety and effectiveness of calcitriol was examined in a double-blind placebo-controlled trial of 35 pediatric patients (13-18 years of age) with end-stage renal disease and on dialysis. The primary efficacy endpoint favored the calcitriol-treated versus the placebo-treated patients Transient hypercalcemia was seen in 1 of 16 calcitriol-treated patients; 6 of 16 (38%) calcitriol-treated patients and 2 of 19 (11%) placebo-treated patients had Ca x P >75 | Labeling | B | - | - | - | Abbott | 02/16/2001 | FALSE' |
MESH:D008228 | 01/13/2003 | busulfex | busulfan | Part of a conditioning regimen administered prior to hematopoietic progenitor cell transplantation for a variety of malignant hematologic or non-malignant diseases | The population pharmacokinetic estimates of busulfan for clearance and volume of distribution were determined in an open-label, uncontrolled PK study in 24 pediatric patients 5 months to 16 years who received busulfan as part of a conditioning regimen administered prior to hematopoietic progenitor cell transplantation for a variety of malignant hematologic or non-malignant diseases Suggested dosing regimen | Labeling | B | - | - | - | Orphan Medical | 12/3/2002 | FALSE' |