PedAM

Pediatric Disease Annotations & Medicines


	lupus erythematosus, systemic

Disease ID	879
Disease	lupus erythematosus, systemic
Synonym	disseminated lupus erythematosus erythematosis lupus systemic le syndrome les syndrome lupus erythematosis lupus erythematosis (nos) lupus erythematosis disseminated lupus erythematosus disseminatus lupus erythematosus systemic lupus erythematosus, disseminated lupus erythematosus, systemic [disease/finding] lupus syndrome lupus syndromes lupus, erythematosus, systemic sle - lupus erythematosus, systemic sle - systemic lupus erythematosus sles syndrome disseminated lupus erythematosis syndrome lupus syst lupus erythematosus systemic lupus erythematosis systemic lupus erythematosus systemic lupus erythematosus (disorder) systemic lupus erythematosus (sle) systemic lupus erythematosus nos systemic lupus erythematosus nos (disorder)
OMIM	OMIM:152700
DOID	DOID:9074
MeSH	D008180
SNOMED-CT	SNOMEDCT_US_2016_09_01:55464009
Comorbidity	UMLS \| Disease \| Sentences' Count(Total Sentences:409) C0004153 \| atherosclerosis \| 42 C0027697 \| nephritis \| 40 C0024143 \| lupus nephritis \| 28 C0020538 \| hypertension \| 26 C0042384 \| vasculitis \| 25 C0042373 \| vascular disease \| 23 C0085278 \| antiphospholipid syndrome \| 20 C0022658 \| renal disease \| 19 C0003864 \| arthritis \| 19 C0040034 \| thrombocytopenia \| 18 C0007222 \| cardiovascular disease \| 14 C0040053 \| thrombosis \| 13 C0034150 \| purpura \| 12 C0017658 \| glomerulonephritis \| 12 C0020542 \| pulmonary hypertension \| 12 C0011570 \| depression \| 11 C0002871 \| anemia \| 11 C0033975 \| psychosis \| 10 C0041296 \| tuberculosis \| 9 C0034155 \| thrombotic thrombocytopenic purpura \| 9 C0042769 \| virus infection \| 8 C0003873 \| rheumatoid arthritis \| 8 C0948265 \| metabolic syndrome \| 7 C0022658 \| nephropathy \| 7 C0030305 \| pancreatitis \| 7 C0021053 \| immune disease \| 7 C0027051 \| myocardial infarction \| 6 C0442874 \| neuropathy \| 6 C0027051 \| myocardial infarct \| 6 C0023895 \| liver disease \| 6 C0002874 \| aplastic anemia \| 6 C0019360 \| herpes zoster \| 5 C0024291 \| hemophagocytic syndrome \| 5 C1619734 \| pulmonary arterial hypertension \| 5 C0019360 \| zoster \| 5 C0018799 \| heart disease \| 5 C0026975 \| myelitis \| 5 C0409974 \| lupus erythematosus \| 5 C0031117 \| peripheral neuropathy \| 5 C0032285 \| pneumonia \| 5 C0162855 \| mucinosis \| 4 C0026896 \| myasthenia gravis \| 4 C0022661 \| end-stage renal disease \| 4 C0006663 \| calcinosis \| 4 C0024299 \| lymphoma \| 4 C0021400 \| influenza \| 4 C0003467 \| anxiety \| 4 C0002871 \| anaemia \| 4 C0026946 \| fungal infection \| 4 C0270612 \| leukoencephalopathy \| 4 C0004030 \| aspergillosis \| 4 C0022658 \| kidney disease \| 4 C0024115 \| pulmonary disease \| 4 C0010346 \| crohn's disease \| 4 C0155626 \| acute myocardial infarction \| 4 C0014544 \| epilepsy \| 4 C0035309 \| retinopathy \| 4 C0020455 \| hypergammaglobulinemia \| 3 C0003486 \| aortic aneurysm \| 3 C0001339 \| acute pancreatitis \| 3 C0852949 \| arterial disease \| 3 C0021847 \| intestinal pseudo-obstruction \| 3 C0002878 \| hemolytic anemia \| 3 C0010068 \| coronary heart disease \| 3 C0002880 \| autoimmune hemolytic anemia \| 3 C0034902 \| pure red cell aplasia \| 3 C0007642 \| cellulitis \| 3 C0032231 \| pleuritis \| 3 C0022735 \| klinefelter's syndrome \| 3 C0007115 \| thyroid ca \| 3 C0600260 \| obstructive pulmonary disease \| 3 C0015230 \| rash \| 3 C0027873 \| neuromyelitis optica \| 3 C0021359 \| infertile \| 3 C0034735 \| raynaud's phenomenon \| 3 C0011603 \| dermatitis \| 3 C0033860 \| psoriasis \| 3 C0017661 \| iga nephropathy \| 3 C0022408 \| arthropathy \| 3 C0027813 \| neuritis \| 3 C0026654 \| moyamoya syndrome \| 3 C0011847 \| diabetes \| 3 C1704436 \| peripheral arterial disease \| 3 C0026654 \| moyamoya \| 3 C0031039 \| pericardial effusion \| 3 C0040128 \| thyroid disease \| 3 C0024137 \| cutaneous lupus erythematosus \| 3 C0042373 \| vascular diseases \| 3 C0035078 \| renal failure \| 3 C0037928 \| myelopathy \| 3 C0010054 \| coronary atherosclerosis \| 3 C0027947 \| neutropenia \| 3 C0019163 \| hepatitis b \| 3 C0010068 \| coronary artery disease \| 3 C1527336 \| sjogren's syndrome \| 3 C0011849 \| diabetes mellitus \| 3 C0027121 \| myositis \| 3 C0024894 \| mastitis \| 2 C0019158 \| hepatitis \| 2 C0042870 \| vitamin d defic \| 2 C0151740 \| intracranial hypertension \| 2 C0009319 \| colitis \| 2 C0001815 \| myelofibrosis \| 2 C0033680 \| protein-losing enteropathy \| 2 C0022661 \| chronic kidney disease \| 2 C0272286 \| immune thrombocytopenia \| 2 C0024117 \| chronic obstructive pulmonary disease \| 2 C0039263 \| takayasu's arteritis \| 2 C0027726 \| nephrotic syndrome \| 2 C0035435 \| rheumatic disease \| 2 C0032326 \| pneumothorax \| 2 C0021655 \| insulin resistance syndrome \| 2 C0035302 \| retinal artery occlusion \| 2 C0221002 \| primary hyperparathyroidism \| 2 C0024314 \| lymphoproliferative disorder \| 2 C0018824 \| valvular heart disease \| 2 C0030326 \| panniculitis \| 2 C0007222 \| cardiovascular diseases \| 2 C0149931 \| migraine \| 2 C0878544 \| cardiomyopathy \| 2 C1510471 \| hypovitaminosis \| 2 C0009782 \| connective tissue disease \| 2 C0035333 \| retinitis \| 2 C0024312 \| lymphopenia \| 2 C0242584 \| autoimmune thrombocytopenia \| 2 C0006666 \| calciphylaxis \| 2 C0004623 \| bacterial infections \| 2 C0023890 \| cirrhosis \| 2 C0029456 \| osteoporosis \| 2 C0024115 \| lung disease \| 2 C0026946 \| fungal infections \| 2 C0039614 \| tetanus \| 2 C0006142 \| breast cancer \| 2 C0004096 \| asthma \| 2 C0022116 \| ischemia \| 2 C0029134 \| optic neuritis \| 2 C0034069 \| pulmonary fibrosis \| 2 C0085278 \| anti-phospholipid syndrome \| 2 C0021831 \| bowel disease \| 2 C0033687 \| proteinuria \| 2 C0040100 \| thymoma \| 2 C1704275 \| pyomyositis \| 2 C0155733 \| aortic atherosclerosis \| 2 C0003874 \| septic arthritis \| 2 C0032285 \| pneumonitis \| 2 C0241910 \| autoimmune hepatitis \| 2 C0000786 \| miscarriage \| 2 C0007115 \| thyroid cancer \| 2 C0021831 \| enteropathy \| 2 C0085278 \| antiphospholipid antibody syndrome \| 2 C0155765 \| microangiopathy \| 2 C0031046 \| pericarditis \| 2 C0031117 \| peripheral neuropathies \| 2 C0038220 \| status epilepticus \| 2 C0014118 \| endocarditis \| 2 C0017601 \| glaucoma \| 2 C0035435 \| rheumatic diseases \| 2 C0281963 \| red cell aplasia \| 2 C0003504 \| aortic regurgitation \| 2 C0035579 \| hypovitaminosis d \| 2 C0032285 \| pneumoniae \| 2 C0272242 \| complement deficiency \| 2 C0042870 \| vitamin d deficiency \| 2 C0023524 \| progressive multifocal leukoencephalopathy \| 2 C0020676 \| hypothyroidism \| 2 C0004623 \| bacterial infection \| 2 C0020502 \| hyperparathyroidism \| 2 C0085292 \| stiff-person syndrome \| 1 C0020540 \| malignant hypertension \| 1 C0040261 \| onychomycosis \| 1 C0010414 \| cryptococcosis \| 1 C0007847 \| cervical cancer \| 1 C0010481 \| cushing's syndrome \| 1 C0035078 \| kidney failure \| 1 C0041328 \| renal tuberculosis \| 1 C0025289 \| meningitis \| 1 C0024299 \| lymphomas \| 1 C0003972 \| atherosclerotic cardiovascular disease \| 1 C0027059 \| myocarditis \| 1 C0030354 \| papilloma \| 1 C0026948 \| mycosis fungoides \| 1 C0152966 \| pneumococcal septicaemia \| 1 C0031039 \| pericardial effusions \| 1 C0012569 \| diplopia \| 1 C0043117 \| immune thrombocytopenic purpura \| 1 C0162299 \| thyroid cyst \| 1 C0152026 \| retinal vasculitis \| 1 C0036202 \| sarcoidosis \| 1 C0031069 \| familial mediterranean fever \| 1 C0178664 \| glomerulosclerosis \| 1 C0022735 \| primary hypogonadism \| 1 C0002895 \| sickle cell disease \| 1 C0032587 \| polyradiculoneuropathy \| 1 C0023895 \| liver diseases \| 1 C0032914 \| preeclampsia \| 1 C0151311 \| cranial nerve palsy \| 1 C0042109 \| urticarial \| 1 C0238463 \| papillary thyroid carcinoma \| 1 C0035328 \| retinal vein occlusion \| 1 C0519030 \| klebsiella pneumonia \| 1 C0025202 \| melanoma \| 1 C0281658 \| primary intraocular lymphoma \| 1 C0699791 \| gastric carcinoma \| 1 C0042900 \| vitiligo \| 1 C0034065 \| pulmonary embolism \| 1 C0020295 \| hydronephrosis \| 1 C0042373 \| vascular disorder \| 1 C0023418 \| leukemia \| 1 C0014175 \| endometriosis \| 1 C0302592 \| cervical ca \| 1 C0022735 \| klinefelter syndrome \| 1 C0314719 \| dry eye \| 1 C0026986 \| myelodysplastic syndrome \| 1 C0018801 \| heart failure \| 1 C0018552 \| hamartomas \| 1 C0010414 \| cryptococcus neoformans \| 1 C0024314 \| lymphoproliferative disorders \| 1 C0017668 \| focal segmental glomerulosclerosis \| 1 C0020258 \| normal pressure hydrocephalus \| 1 C0014544 \| seizure disorder \| 1 C0041408 \| turner syndrome \| 1 C0003486 \| aortic aneurysms \| 1 C0010278 \| craniosynostosis \| 1 C0032305 \| pneumocystis \| 1 C0010692 \| cystitis \| 1 C0007766 \| intracranial aneurysm \| 1 C0007758 \| cerebellar ataxia \| 1 C0020538 \| vascular hypertension \| 1 C0041318 \| tuberculous meningitis \| 1 C0043349 \| xerophthalmia \| 1 C0017665 \| membranous glomerulonephritis \| 1 C0020255 \| hydrocephalus \| 1 C0002878 \| haemolytic anaemia \| 1 C0917990 \| acroosteolysis \| 1 C0272126 \| evans syndrome \| 1 C0020437 \| hypercalcaemia \| 1 C0677607 \| hashimoto's thyroiditis \| 1 C0021390 \| inflammatory bowel disease \| 1 C0001126 \| renal tubular acidosis \| 1 C0014306 \| enophthalmos \| 1 C0002453 \| amenorrhea \| 1 C0742472 \| central nervous system lymphoma \| 1 C0087086 \| thrombi \| 1 C0025309 \| meningoencephalitis \| 1 C0011608 \| dermatitis herpetiformis \| 1 C0020676 \| hypothyroid \| 1 C0019655 \| histoplasmosis \| 1 C0032305 \| pneumocystis jiroveci pneumonia \| 1 C0037198 \| sinus thrombosis \| 1 C0001430 \| adenoma \| 1 C0026272 \| mixed connective tissue disease \| 1 C0033845 \| idiopathic intracranial hypertension \| 1 C0007193 \| dilated cardiomyopathies \| 1 C0007177 \| cardiac tamponade \| 1 C0018552 \| hamartoma \| 1 C0007766 \| cranial aneurysm \| 1 C0752124 \| spinocerebellar ataxia type 6 \| 1 C0026848 \| myopathy \| 1 C0026764 \| multiple myeloma \| 1 C0041321 \| miliary tuberculosis \| 1 C0019348 \| herpes simplex \| 1 C0005586 \| bipolar affective disorder \| 1 C0002895 \| sickle-cell disease \| 1 C0024291 \| hemophagocytic lymphohistiocytosis \| 1 C0041309 \| tuberculosis cutis \| 1 C0235974 \| pancreatic cancer \| 1 C0206062 \| interstitial lung disease \| 1 C0034359 \| pyuria \| 1 C0007688 \| central retinal artery occlusion \| 1 C0038463 \| strongyloidiasis \| 1 C0549473 \| thyroid carcinoma \| 1 C0004943 \| behcet's disease \| 1 C0003507 \| aortic stenosis \| 1 C0019348 \| herpes simplex infection \| 1 C1263846 \| attention deficit hyperactivity disorder \| 1 C0024790 \| paroxysmal nocturnal hemoglobinuria \| 1 C0162429 \| malnutrition \| 1 C0014742 \| erythema multiforme \| 1 C0026764 \| myeloma \| 1 C0021359 \| infertility \| 1 C0031090 \| periodontal disease \| 1 C0151744 \| myocardial ischemia \| 1 C0035204 \| respiratory disease \| 1 C0006840 \| candidiasis \| 1 C0034012 \| delayed puberty \| 1 C0078981 \| arachnoid cysts \| 1 C0023794 \| lipidosis \| 1 C0024530 \| malaria \| 1 C1565489 \| renal insufficiency \| 1 C0026985 \| myelodysplasia \| 1 C0040188 \| tic disorders \| 1 C0002726 \| amyloidosis \| 1 C0376545 \| hematological malignancies \| 1 C0007222 \| cardiovascular disorders \| 1 C0025958 \| microcephaly \| 1 C0002173 \| follicular mucinosis \| 1 C0018784 \| sensorineural hearing loss \| 1 C0019360 \| herpes zoster infection \| 1 C0338585 \| carotid artery dissection \| 1 C0042594 \| vestibular disorders \| 1 C0038325 \| stevens-johnson syndrome \| 1 C0281658 \| intraocular lymphoma \| 1 C0022116 \| ischaemia \| 1 C0042373 \| vascular disorders \| 1 C0018799 \| cardiac disease \| 1 C0017605 \| angle closure glaucoma \| 1 C0026946 \| mycosis \| 1 C0014121 \| infective endocarditis \| 1 C0000889 \| acanthosis nigricans \| 1 C0024143 \| lupus glomerulonephritis \| 1 C0032269 \| streptococcus pneumoniae infection \| 1 C0023860 \| listeria monocytogenes infection \| 1 C0339962 \| pulmonary mucormycosis \| 1 C0019048 \| hemoglobinuria \| 1 C0011633 \| dermatomyositis \| 1 C0003850 \| arteriosclerosis \| 1 C0032708 \| porphyria \| 1 C0085278 \| anti-phospholipid antibody syndrome \| 1 C0751571 \| urological cancer \| 1 C0030499 \| parasitic disease \| 1 C0085273 \| parvovirus b19 infection \| 1 C0030499 \| parasitic diseases \| 1 C0086543 \| cataracts \| 1 C0026718 \| mucormycosis \| 1 C0152227 \| epiphora \| 1 C0151332 \| active tuberculosis \| 1 C0020626 \| hypoparathyroidism \| 1 C0751878 \| cns vasculitis \| 1 C0206157 \| nemaline myopathy \| 1 C0155357 \| posterior scleritis \| 1 C0206093 \| primitive neuroectodermal tumor \| 1 C0040558 \| toxoplasmosis \| 1 C0035204 \| respiratory diseases \| 1 C0019069 \| hemophilia \| 1 C0006625 \| cachexia \| 1 C0152455 \| keratomalacia \| 1 C2607914 \| allergic rhinitis \| 1 C1290398 \| cerebral artery aneurysm \| 1 C0031099 \| periodontitis \| 1 C0027721 \| minimal change nephropathy \| 1 C0079293 \| epidermolysis bullosa acquisita \| 1 C0035258 \| restless legs syndrome (rls) \| 1 C0151744 \| myocardial ischaemia \| 1 C0004576 \| babesiosis \| 1 C0010051 \| coronary aneurysm \| 1 C0039103 \| synovitis \| 1 C0851578 \| sleep disorders \| 1 C0022656 \| renal cortical necrosis \| 1 C0037317 \| sleep disturbances \| 1 C0730306 \| ocular lymphoma \| 1 C1527383 \| morphea \| 1 C0027709 \| nephrocalcinosis \| 1 C0041327 \| pulmonary tuberculosis \| 1 C0017665 \| membranous nephropathy \| 1 C0022354 \| obstructive jaundice \| 1 C0032305 \| pneumocystis carinii pneumonia \| 1 C0011615 \| atopic dermatitis \| 1 C0751571 \| urological cancers \| 1 C0023316 \| lens subluxation \| 1 C0014544 \| seizure disorders \| 1 C0235618 \| proliferative glomerulonephritis \| 1 C0393819 \| chronic inflammatory demyelinating polyradiculoneuropathy \| 1 C1262481 \| eosinophilic gastroenteritis \| 1 C0162872 \| thoracic aortic aneurysm \| 1 C0002874 \| aplastic anaemia \| 1 C0079731 \| b cell lymphoma \| 1 C0040128 \| thyroid diseases \| 1 C0012813 \| diverticulitis \| 1 C0037274 \| skin disease \| 1 C0037317 \| sleep disturbance \| 1 C0043092 \| wegener granulomatosis \| 1 C0376358 \| prostate cancer \| 1 C0014868 \| esophagitis \| 1 C0023890 \| liver cirrhosis \| 1 C0018378 \| guillain-barre syndrome \| 1 C0036416 \| scleritis \| 1 C1145670 \| respiratory failure \| 1 C0206674 \| villous adenoma \| 1 C0276721 \| phaeohyphomycosis \| 1 C0028754 \| obesity \| 1 C0343525 \| lemierre's syndrome \| 1 C0020503 \| secondary hyperparathyroidism \| 1 C0035302 \| retinal artery occlusions \| 1 C0002170 \| alopecia \| 1 C0078981 \| arachnoid cyst \| 1 C0020619 \| hypogonadism \| 1 C0026848 \| myopathies \| 1 C0040128 \| thyroid disorders \| 1 C0020598 \| hypoglycemia \| 1 C0017160 \| gastroenteritis \| 1 C0004134 \| ataxia \| 1 C0031212 \| personality disorders \| 1 C0041296 \| mycobacterium tuberculosis infection \| 1 C0035455 \| rhinitis \| 1 C0085315 \| cerebral toxoplasmosis \| 1 C0162566 \| porphyria cutanea tarda \| 1 C0007787 \| transient ischemic attack \| 1 C0014038 \| encephalitis \| 1 C0024623 \| gastric cancer \| 1 C1527336 \| sjogren syndrome \| 1 C0206178 \| cmv retinitis \| 1 C0038362 \| stomatitis \| 1 C0012546 \| diphtheria \| 1 C0238124 \| necrotizing fasciitis \| 1 C0085293 \| hepatitis e \| 1 C0041188 \| tropical pyomyositis \| 1 C0026769 \| multiple sclerosis \| 1 C0679466 \| cognitive deficits \| 1 C0010051 \| coronary aneurysms \| 1
Curated Gene	Entrez_id \| Symbol \| Resource(Total Genes:87) HLA-DRB1 \| 3123 \| CTD_human CLEC16A \| 23274 \| CTD_human;GWASCAT IL6 \| 3569 \| CTD_human HLA-DQA1 \| 3117 \| CTD_human;GWASCAT PXK \| 54899 \| CTD_human;GWASCAT CTLA4 \| 1493 \| UniProtKB-KW FCGR2B \| 2213 \| CTD_human;UniProtKB-KW;GHR CRP \| 1401 \| CTD_human;GHR FCGR2A \| 2212 \| CTD_human TNFAIP3 \| 7128 \| CTD_human;GWASCAT;GHR RIPK1 \| 8737 \| GHR STAT4 \| 6775 \| CTD_human;GWASCAT;GHR;UniProtKB-KW PTGS2 \| 5743 \| CTD_human BLK \| 640 \| CTD_human;GWASCAT C2 \| 717 \| GWASCAT IL21 \| 59067 \| CTD_human LTK \| 4058 \| UniProtKB-KW SLEB3 \| 64695 \| CTD_human TNIP1 \| 10318 \| CTD_human;GWASCAT IL12B \| 3593 \| CTD_human PTPN22 \| 26191 \| CTD_human;UNIPROT;GHR UBE2L3 \| 7332 \| GWASCAT DGUOK-AS1 \| 100874048 \| GWASCAT BANK1 \| 55024 \| CTD_human;GWASCAT;GHR ARID5B \| 84159 \| GWASCAT IRF5 \| 3663 \| CTD_human;UniProtKB-KW;GHR RASGRP1 \| 10125 \| UniProtKB-KW KIAA0319L \| 79932 \| GWASCAT IL10 \| 3586 \| CTD_human WDFY4 \| 57705 \| GWASCAT IFIH1 \| 64135 \| CTD_human PRL \| 5617 \| CTD_human TREX1 \| 11277 \| CTD_human;GHR;UniProtKB-KW;UNIPROT C1QA \| 712 \| CTD_human CD80 \| 941 \| GWASCAT ATG5 \| 9474 \| GWASCAT CLU \| 1191 \| CTD_human FASLG \| 356 \| CTD_human TNFSF4 \| 7292 \| CTD_human;UniProtKB-KW PRDM1 \| 639 \| CTD_human XRCC5 \| 7520 \| UniProtKB-KW XRCC6 \| 2547 \| UniProtKB-KW CDKN1B \| 1027 \| GWASCAT CR2 \| 1380 \| CTD_human;UniProtKB-KW;GHR DNASE1 \| 1773 \| CTD_human;GHR CFB \| 629 \| CTD_human TNPO3 \| 23534 \| GWASCAT ETS1 \| 2113 \| CTD_human;GWASCAT ITGAM \| 3684 \| CTD_human;UniProtKB-KW;GHR;GWASCAT AFF1 \| 4299 \| GWASCAT NCF2 \| 4688 \| GHR IL4 \| 3565 \| CTD_human C4B \| 721 \| UniProtKB-KW PHRF1 \| 57661 \| CTD_human;GWASCAT SH2B3 \| 10019 \| CTD_human P2RY12 \| 64805 \| CTD_human CREBL2 \| 1389 \| GWASCAT DNASE1L3 \| 1776 \| CTD_human;GHR SAMD9L \| 219285 \| GWASCAT C4A \| 720 \| CTD_human;UniProtKB-KW;GHR UHRF1BP1 \| 54887 \| CTD_human;GWASCAT TNXB \| 7148 \| GWASCAT PDCD1 \| 5133 \| CTD_human;UniProtKB-KW;GHR JAZF1 \| 221895 \| CTD_human;GWASCAT HLA-DQB2 \| 3120 \| GWASCAT TLR5 \| 7100 \| CTD_human;UniProtKB-KW;GHR IKZF1 \| 10320 \| CTD_human HIP1 \| 3092 \| GWASCAT ANXA3 \| 306 \| CTD_human IL21R \| 50615 \| CTD_human ELF1 \| 1997 \| GWASCAT ITGAX \| 3687 \| CTD_human;GWASCAT FAM98B \| 283742 \| GWASCAT SLC15A4 \| 121260 \| CTD_human;GWASCAT DDA1 \| 79016 \| GWASCAT LAMC2 \| 3918 \| GWASCAT TPI1P2 \| 286016 \| GWASCAT ANKS1A \| 23294 \| GWASCAT FCGR3A \| 2214 \| CTD_human CSK \| 1445 \| CTD_human LRRC18 \| 474354 \| GWASCAT ZBTB12 \| 221527 \| GWASCAT MSH5 \| 4439 \| GWASCAT SLEH1 \| 170682 \| CTD_human MSH5-SAPCD1 \| 100532732 \| GWASCAT RASGRP3 \| 25780 \| CTD_human;GWASCAT GPR19 \| 2842 \| GWASCAT
Inferring Gene	Entrez_id \| Symbol \| Resource(Total Genes:409) 23 \| ABCF1 \| infer 29777 \| ABT1 \| infer 1636 \| ACE \| infer 52 \| ACP1 \| infer 4299 \| AFF1 \| infer 177 \| AGER \| infer 10554 \| AGPAT1 \| infer 199 \| AIF1 \| infer 339845 \| ASS1P7 \| infer 1388 \| ATF6B \| infer 534 \| ATP6V1G2 \| infer 549 \| AUH \| infer 8705 \| B3GALT4 \| infer 55024 \| BANK1 \| infer 8553 \| BHLHE40 \| infer 640 \| BLK \| infer 6046 \| BRD2 \| infer 11120 \| BTN2A1 \| infer 11118 \| BTN3A2 \| infer 56244 \| BTNL2 \| infer 712 \| C1QA \| infer 713 \| C1QB \| infer 714 \| C1QC \| infer 717 \| C2 \| infer 718 \| C3 \| infer 720 \| C4A \| infer 100130988 \| C7orf72 \| infer 847 \| CAT \| infer 54535 \| CCHCR1 \| infer 919 \| CD247 \| infer 1041 \| CDSN \| infer 629 \| CFB \| infer 9071 \| CLDN10 \| infer 23274 \| CLEC16A \| infer 1192 \| CLIC1 \| infer 1302 \| COL11A2 \| infer 1380 \| CR2 \| infer 1401 \| CRP \| infer 1460 \| CSNK2B \| infer 1493 \| CTLA4 \| infer 29119 \| CTNNA3 \| infer 51596 \| CUTA \| infer 57703 \| CWC22 \| infer 1543 \| CYP1A1 \| infer 1545 \| CYP1B1 \| infer 1616 \| DAXX \| infer 23564 \| DDAH2 \| infer 780 \| DDR1 \| infer 729816 \| DHFRP2 \| infer 8449 \| DHX16 \| infer 1740 \| DLG2 \| infer 135656 \| DPCR1 \| infer 80864 \| EGFL8 \| infer 10919 \| EHMT2 \| infer 1997 \| ELF1 \| infer 2068 \| ERCC2 \| infer 2099 \| ESR1 \| infer 2113 \| ETS1 \| infer 83648 \| FAM167A \| infer 356 \| FASLG \| infer 2213 \| FCGR2B \| infer 2214 \| FCGR3A \| infer 115352 \| FCRL3 \| infer 2237 \| FEN1 \| infer 63943 \| FKBPL \| infer 10211 \| FLOT1 \| infer 2492 \| FSHR \| infer 2550 \| GABBR1 \| infer 2794 \| GNL1 \| infer 394254 \| GPR89P \| infer 63940 \| GPSM3 \| infer 2944 \| GSTM1 \| infer 2968 \| GTF2H4 \| infer 414777 \| HCG18 \| infer 285834 \| HCG22 \| infer 352961 \| HCG26 \| infer 253018 \| HCG27 \| infer 10255 \| HCG9 \| infer 10866 \| HCP5 \| infer 23072 \| HECW1 \| infer 3092 \| HIP1 \| infer 3009 \| HIST1H1B \| infer 8341 \| HIST1H2BN \| infer 3105 \| HLA-A \| infer 3106 \| HLA-B \| infer 3107 \| HLA-C \| infer 3108 \| HLA-DMA \| infer 3109 \| HLA-DMB \| infer 3111 \| HLA-DOA \| infer 3112 \| HLA-DOB \| infer 3113 \| HLA-DPA1 \| infer 3115 \| HLA-DPB1 \| infer 3117 \| HLA-DQA1 \| infer 3118 \| HLA-DQA2 \| infer 3119 \| HLA-DQB1 \| infer 3120 \| HLA-DQB2 \| infer 3122 \| HLA-DRA \| infer 3123 \| HLA-DRB1 \| infer 3125 \| HLA-DRB3 \| infer 3126 \| HLA-DRB4 \| infer 3127 \| HLA-DRB5 \| infer 3132 \| HLA-DRB9 \| infer 3133 \| HLA-E \| infer 3134 \| HLA-F \| infer 3135 \| HLA-G \| infer 3138 \| HLA-K \| infer 3139 \| HLA-L \| infer 267014 \| HLA-N \| infer 267015 \| HLA-S \| infer 645950 \| HNRNPA1P1 \| infer 100131609 \| HNRNPA1P2 \| infer 3272 \| HRES1 \| infer 9955 \| HS3ST3A1 \| infer 7923 \| HSD17B8 \| infer 3303 \| HSPA1A \| infer 3304 \| HSPA1B \| infer 3305 \| HSPA1L \| infer 8870 \| IER3 \| infer 64135 \| IFIH1 \| infer 3439 \| IFNA1 \| infer 3451 \| IFNA17 \| infer 3440 \| IFNA2 \| infer 3442 \| IFNA5 \| infer 10320 \| IKZF1 \| infer 3586 \| IL10 \| infer 3593 \| IL12B \| infer 3603 \| IL16 \| infer 3606 \| IL18 \| infer 3553 \| IL1B \| infer 3557 \| IL1RN \| infer 3558 \| IL2 \| infer 59067 \| IL21 \| infer 50615 \| IL21R \| infer 149233 \| IL23R \| infer 117283 \| IP6K3 \| infer 3654 \| IRAK1 \| infer 3661 \| IRF3 \| infer 3663 \| IRF5 \| infer 3665 \| IRF7 \| infer 3684 \| ITGAM \| infer 3687 \| ITGAX \| infer 3704 \| ITPA \| infer 3710 \| ITPR3 \| infer 221895 \| JAZF1 \| infer 375616 \| KCP \| infer 3833 \| KIFC1 \| infer 22914 \| KLRK1 \| infer 3879 \| KRT18P1 \| infer 338017 \| KRT8P1 \| infer 3918 \| LAMC2 \| infer 51176 \| LEF1 \| infer 221496 \| LEMD2 \| infer 474354 \| LRRC18 \| infer 57819 \| LSM2 \| infer 7940 \| LST1 \| infer 4049 \| LTA \| infer 4050 \| LTB \| infer 58496 \| LY6G5B \| infer 80741 \| LY6G5C \| infer 80740 \| LY6G6C \| infer 79136 \| LY6G6E \| infer 259215 \| LY6G6F \| infer 4063 \| LY9 \| infer 4067 \| LYN \| infer 653639 \| LYPLA2P1 \| infer 116511 \| MAS1L \| infer 4153 \| MBL2 \| infer 401250 \| MCCD1 \| infer 9656 \| MDC1 \| infer 4204 \| MECP2 \| infer 4208 \| MEF2C \| infer 4240 \| MFGE8 \| infer 100507436 \| MICA \| infer 4277 \| MICB \| infer 4295 \| MLN \| infer 4318 \| MMP9 \| infer 4340 \| MOG \| infer 28973 \| MRPS18B \| infer 4439 \| MSH5 \| infer 394263 \| MUC21 \| infer 4615 \| MYD88 \| infer 442204 \| MYL8P \| infer 254827 \| NAALADL2 \| infer 10 \| NAT2 \| infer 259197 \| NCR3 \| infer 257194 \| NEGR1 \| infer 4758 \| NEU1 \| infer 4792 \| NFKBIA \| infer 4795 \| NFKBIL1 \| infer 646192 \| NOP56P1 \| infer 4855 \| NOTCH4 \| infer 11270 \| NRM \| infer 84628 \| NTNG2 \| infer 26531 \| OR11A1 \| infer 26529 \| OR12D2 \| infer 81797 \| OR12D3 \| infer 442191 \| OR14J1 \| infer 442184 \| OR2B3 \| infer 26716 \| OR2H1 \| infer 7932 \| OR2H2 \| infer 26707 \| OR2J2 \| infer 442186 \| OR2J3 \| infer 26692 \| OR2W1 \| infer 81328 \| OR4A15 \| infer 81696 \| OR5V1 \| infer 5027 \| P2RX7 \| infer 5089 \| PBX2 \| infer 54510 \| PCDH18 \| infer 5133 \| PDCD1 \| infer 10471 \| PFDN6 \| infer 84547 \| PGBD1 \| infer 5252 \| PHF1 \| infer 57661 \| PHRF1 \| infer 91584 \| PLXNA4 \| infer 5460 \| POU5F1 \| infer 5514 \| PPP1R10 \| infer 6992 \| PPP1R11 \| infer 9374 \| PPT2 \| infer 639 \| PRDM1 \| infer 80742 \| PRR3 \| infer 80863 \| PRRT1 \| infer 5696 \| PSMB8 \| infer 5698 \| PSMB9 \| infer 170679 \| PSORS1C1 \| infer 170680 \| PSORS1C2 \| infer 26191 \| PTPN22 \| infer 9232 \| PTTG1 \| infer 9698 \| PUM1 \| infer 5820 \| PVT1 \| infer 54899 \| PXK \| infer 25780 \| RASGRP3 \| infer 5863 \| RGL2 \| infer 150221 \| RIMBP3C \| infer 6015 \| RING1 \| infer 80352 \| RNF39 \| infer 6048 \| RNF5 \| infer 387044 \| RPL13P \| infer 100129670 \| RPL18P8 \| infer 646784 \| RPL5P6 \| infer 401725 \| RPL6P25 \| infer 441642 \| RPL7AP9 \| infer 387046 \| RPL8P1 \| infer 79897 \| RPP21 \| infer 6222 \| RPS18 \| infer 342808 \| RPS2P6 \| infer 100271129 \| RPS3AP9 \| infer 442181 \| RPSAP2 \| infer 100130676 \| RPSAP38 \| infer 6257 \| RXRB \| infer 6403 \| SELP \| infer 23064 \| SETX \| infer 57713 \| SFMBT2 \| infer 389376 \| SFTA2 \| infer 10019 \| SH2B3 \| infer 6499 \| SKIV2L \| infer 57823 \| SLAMF7 \| infer 121260 \| SLC15A4 \| infer 6512 \| SLC1A7 \| infer 7922 \| SLC39A7 \| infer 80736 \| SLC44A4 \| infer 115584 \| SLC5A11 \| infer 6657 \| SOX2 \| infer 6696 \| SPP1 \| infer 80725 \| SRCIN1 \| infer 6772 \| STAT1 \| infer 6775 \| STAT4 \| infer 8859 \| STK19 \| infer 8831 \| SYNGAP1 \| infer 6890 \| TAP1 \| infer 6891 \| TAP2 \| infer 6892 \| TAPBP \| infer 6941 \| TCF19 \| infer 22797 \| TFEC \| infer 7040 \| TGFB1 \| infer 7100 \| TLR5 \| infer 51284 \| TLR7 \| infer 54106 \| TLR9 \| infer 117532 \| TMC2 \| infer 81542 \| TMX1 \| infer 7124 \| TNF \| infer 7128 \| TNFAIP3 \| infer 7133 \| TNFRSF1B \| infer 7292 \| TNFSF4 \| infer 10318 \| TNIP1 \| infer 23534 \| TNPO3 \| infer 7148 \| TNXB \| infer 286016 \| TPI1P2 \| infer 11181 \| TREH \| infer 11277 \| TREX1 \| infer 11219 \| TREX2 \| infer 10107 \| TRIM10 \| infer 89870 \| TRIM15 \| infer 7726 \| TRIM26 \| infer 5987 \| TRIM27 \| infer 11074 \| TRIM31 \| infer 56658 \| TRIM39 \| infer 135644 \| TRIM40 \| infer 493829 \| TRIM72 \| infer 441631 \| TSPAN11 \| infer 203068 \| TUBB \| infer 7297 \| TYK2 \| infer 10537 \| UBD \| infer 7332 \| UBE2L3 \| infer 387117 \| UBQLN1P1 \| infer 54887 \| UHRF1BP1 \| infer 7407 \| VARS \| infer 57176 \| VARS2 \| infer 6293 \| VPS52 \| infer 387122 \| WASF5P \| infer 57705 \| WDFY4 \| infer 9277 \| WDR46 \| infer 7515 \| XRCC1 \| infer 7517 \| XRCC3 \| infer 7518 \| XRCC4 \| infer 319121 \| YWHAQP1 \| infer 221527 \| ZBTB12 \| infer 9278 \| ZBTB22 \| infer 221504 \| ZBTB9 \| infer 346171 \| ZFP57 \| infer 282890 \| ZNF311 \| infer 115509 \| ZNF689 \| infer 30834 \| ZNRD1 \| infer 221584 \| ZSCAN12P1 \| infer 10541 \| ANP32B \| infer 350 \| APOH \| infer 9474 \| ATG5 \| infer 596 \| BCL2 \| infer 721 \| C4B \| infer 6361 \| CCL17 \| infer 6347 \| CCL2 \| infer 729230 \| CCR2 \| infer 1232 \| CCR3 \| infer 1233 \| CCR4 \| infer 1234 \| CCR5 \| infer 930 \| CD19 \| infer 933 \| CD22 \| infer 959 \| CD40LG \| infer 4179 \| CD46 \| infer 941 \| CD80 \| infer 942 \| CD86 \| infer 1051 \| CEBPB \| infer 1378 \| CR1 \| infer 6387 \| CXCL12 \| infer 2833 \| CXCR3 \| infer 1586 \| CYP17A1 \| infer 1557 \| CYP2C19 \| infer 1565 \| CYP2D6 \| infer 1773 \| DNASE1 \| infer 1843 \| DUSP1 \| infer 355 \| FAS \| infer 2207 \| FCER1G \| infer 2212 \| FCGR2A \| infer 2215 \| FCGR3B \| infer 2690 \| GHR \| infer 23119 \| HIC2 \| infer 3306 \| HSPA2 \| infer 3458 \| IFNG \| infer 3459 \| IFNGR1 \| infer 3460 \| IFNGR2 \| infer 3552 \| IL1A \| infer 3565 \| IL4 \| infer 3566 \| IL4R \| infer 3569 \| IL6 \| infer 3674 \| ITGA2B \| infer 3802 \| KIR2DL1 \| infer 3803 \| KIR2DL2 \| infer 3804 \| KIR2DL3 \| infer 3805 \| KIR2DL4 \| infer 57292 \| KIR2DL5A \| infer 554300 \| KIR2DP1 \| infer 3806 \| KIR2DS1 \| infer 100132285 \| KIR2DS2 \| infer 3808 \| KIR2DS3 \| infer 3809 \| KIR2DS4 \| infer 3810 \| KIR2DS5 \| infer 3811 \| KIR3DL1 \| infer 3812 \| KIR3DL2 \| infer 115653 \| KIR3DL3 \| infer 3813 \| KIR3DS1 \| infer 3821 \| KLRC1 \| infer 3822 \| KLRC2 \| infer 3824 \| KLRD1 \| infer 3998 \| LMAN1 \| infer 4155 \| MBP \| infer 4524 \| MTHFR \| infer 5617 \| PRL \| infer 5618 \| PRLR \| infer 5783 \| PTPN13 \| infer 5777 \| PTPN6 \| infer 6401 \| SELE \| infer 5054 \| SERPINE1 \| infer 9306 \| SOCS6 \| infer 6648 \| SOD2 \| infer 7042 \| TGFB2 \| infer 7097 \| TLR2 \| infer 7099 \| TLR4 \| infer 7126 \| TNFAIP1 \| infer 608 \| TNFRSF17 \| infer 7132 \| TNFRSF1A \| infer 10673 \| TNFSF13B \| infer 7421 \| VDR \| infer 7529 \| YWHAB \| infer 727 \| C5 \| infer 1535 \| CYBA \| infer 548594 \| KIR3DP1 \| infer 161357 \| MDGA2 \| infer 4846 \| NOS3 \| infer 6462 \| SHBG \| infer 7185 \| TRAF1 \| infer
Text Mined Gene	(Waiting for update.)
Locus	(Waiting for update.)

Disease ID	879
Disease	lupus erythematosus, systemic
Integrated Phenotype	HPO \| Name(Total Integrated Phenotypes:13) HP:0002102 \| Pleuritis HP:0001878 \| Haemolytic anaemia HP:0001882 \| Decreased blood leukocyte number HP:0000709 \| Psychosis HP:0003613 \| Antiphospholipid antibodies HP:0000123 \| Nephritis HP:0002725 \| Systemic lupus erythematosus HP:0003493 \| Elevated antinuclear antibody HP:0000992 \| Skin photosensitivity HP:0001873 \| Low platelet count HP:0001701 \| Pericarditis HP:0001250 \| Seizures HP:0001369 \| Arthritis
Text Mined Phenotype	HPO \| Name \| Sentences' Count(Total Phenotypes:307) HP:0002621 \| Atherosclerosis \| 43 HP:0000123 \| Nephritis \| 39 HP:0000822 \| Hypertension \| 26 HP:0002633 \| Vasculitis \| 24 HP:0003613 \| Antiphospholipid antibodies \| 18 HP:0001873 \| Low platelet count \| 18 HP:0001369 \| Arthritis \| 17 HP:0012378 \| Fatigue \| 15 HP:0001903 \| Anemia \| 14 HP:0010885 \| Aseptic necrosis \| 14 HP:0002960 \| Autoimmune condition \| 13 HP:0002092 \| Pulmonary artery hypertension \| 12 HP:0000979 \| Purpura \| 12 HP:0000099 \| Glomerular nephritis \| 12 HP:0000716 \| Depression \| 11 HP:0000709 \| Psychosis \| 10 HP:0002617 \| Aneurysmal dilatation \| 10 HP:0001297 \| Cerebral vascular events \| 8 HP:0002315 \| Headaches \| 8 HP:0000112 \| Nephropathy \| 7 HP:0000855 \| Insulin resistance \| 7 HP:0004943 \| Accelerated atherosclerosis \| 7 HP:0012531 \| Pain \| 7 HP:0100543 \| Cognitive deficits \| 7 HP:0001733 \| Pancreatic inflammation \| 7 HP:0001658 \| Myocardial infarction \| 6 HP:0000708 \| Behavioral problems \| 6 HP:0001915 \| Aplastic anemia \| 6 HP:0001370 \| Rheumatoid arthritis \| 6 HP:0001298 \| Encephalopathy \| 6 HP:0001250 \| Seizures \| 5 HP:0002721 \| Immunodeficiency \| 5 HP:0002090 \| Pneumonia \| 5 HP:0000969 \| Dropsy \| 5 HP:0009830 \| Peripheral neuritis \| 4 HP:0012486 \| Inflammation of spinal cord \| 4 HP:0000739 \| Anxiety \| 4 HP:0002665 \| Lymphoma \| 4 HP:0002352 \| Leukoencephalopathy \| 4 HP:0003774 \| End-stage renal failure \| 4 HP:0003473 \| Fatigable weakness \| 4 HP:0003761 \| Calcinosis \| 4 HP:0002664 \| Neoplasia \| 4 HP:0000488 \| Noninflammatory retina disease \| 4 HP:0007417 \| Discoid lupus erythematosus \| 3 HP:0001878 \| Haemolytic anaemia \| 3 HP:0004950 \| Peripheral artery disease \| 3 HP:0001875 \| Neutropenia \| 3 HP:0001735 \| Acute pancreatitis \| 3 HP:0004929 \| Coronary artherosclerosis \| 3 HP:0002354 \| Memory loss \| 3 HP:0030880 \| Raynaud phenomenon \| 3 HP:0002459 \| Dysautonomia \| 3 HP:0003765 \| Psoriasis \| 3 HP:0000083 \| Renal insufficiency \| 3 HP:0004942 \| Aortic aneurysm \| 3 HP:0000752 \| Hyperactive behavior \| 3 HP:0001677 \| Coronary artery disease \| 3 HP:0000819 \| Diabetes mellitus \| 3 HP:0001249 \| Mental retardation \| 3 HP:0000572 \| Visual loss \| 3 HP:0000820 \| Thyroid abnormality \| 3 HP:0002027 \| Abdominal pain \| 3 HP:0001945 \| Fever \| 3 HP:0010702 \| Hypergammaglobulinaemia \| 3 HP:0100658 \| Bacterial infection of skin \| 3 HP:0002102 \| Pleuritis \| 3 HP:0002196 \| Myelopathy \| 3 HP:0012410 \| Pure red cell aplasia \| 3 HP:0100614 \| Muscle inflammation \| 3 HP:0001698 \| Pericardial effusions \| 3 HP:0002202 \| Pleural effusion \| 3 HP:0001541 \| Ascites \| 3 HP:0003040 \| Arthropathy \| 3 HP:0002720 \| Decreased immunoglobulin A \| 3 HP:0100280 \| Morbus Crohn \| 3 HP:0004389 \| Intestinal pseudo-obstruction \| 3 HP:0100550 \| Rupture of tendons \| 3 HP:0004416 \| Precocious atherosclerosis \| 3 HP:0045073 \| Serositis \| 2 HP:0004415 \| Pulmonary artery stenosis \| 2 HP:0002076 \| Migraine headaches \| 2 HP:0001890 \| Autoimmune hemolytic anemia \| 2 HP:0001973 \| Autoimmune thrombocytopenia \| 2 HP:0000110 \| Renal dysplasia \| 2 HP:0003095 \| Septic arthritis \| 2 HP:0001410 \| Decreased liver function \| 2 HP:0000821 \| Underactive thyroid \| 2 HP:0011675 \| Arrhythmias \| 2 HP:0002206 \| Pulmonary fibrosis \| 2 HP:0100512 \| Vitamin D deficiency \| 2 HP:0012622 \| Chronic kidney disease \| 2 HP:0100758 \| Gangrene \| 2 HP:0100806 \| Sepsis \| 2 HP:0000952 \| Yellow skin \| 2 HP:0012578 \| Membranous glomerulonephritis \| 2 HP:0000100 \| Nephrosis \| 2 HP:0012397 \| Atherosclerotic changes of aorta \| 2 HP:0005310 \| Large vessel vasculitis \| 2 HP:0004431 \| Complement deficiency \| 2 HP:0100522 \| Thymoma \| 2 HP:0002829 \| Arthralgias \| 2 HP:0002099 \| Asthma \| 2 HP:0000992 \| Skin photosensitivity \| 2 HP:0002514 \| Intracranial calcifications \| 2 HP:0004944 \| Cerebral artery aneurysm \| 2 HP:0200029 \| Cutaneous vasculitis \| 2 HP:0100665 \| Angiooedema \| 2 HP:0011974 \| Myelofibrosis \| 2 HP:0100022 \| Movement disorder \| 2 HP:0005523 \| Lymphoproliferative disorder \| 2 HP:0002863 \| Myelodysplastic syndrome \| 2 HP:0012115 \| Liver inflammation \| 2 HP:0000939 \| Osteoporosis \| 2 HP:0002133 \| Status epilepticus \| 2 HP:0001888 \| Lymphocytopenia \| 2 HP:0001638 \| Cardiomyopathy \| 2 HP:0002107 \| Collapsed lung \| 2 HP:0004936 \| Blood clot in vein \| 2 HP:0001701 \| Pericarditis \| 2 HP:0003201 \| Rhabdomyolysis \| 2 HP:0000843 \| Hyperparathyroidism \| 2 HP:0000093 \| Proteinuria \| 2 HP:0002243 \| Protein-losing enteropathy \| 2 HP:0001907 \| Thromboembolic disease \| 2 HP:0001659 \| Aortic insufficiency \| 2 HP:0000501 \| Glaucoma \| 2 HP:0100584 \| Endocarditis \| 2 HP:0002583 \| Colitis \| 2 HP:0003002 \| Breast carcinoma \| 2 HP:0002958 \| Immune dysregulation \| 2 HP:0002516 \| Intracranial pressure elevation \| 2 HP:0006510 \| Chronic obstructive pulmonary disease \| 2 HP:0012223 \| Ruptured spleen \| 2 HP:0002138 \| Subarachnoid hemorrhage \| 2 HP:0001394 \| Hepatic cirrhosis \| 2 HP:0002140 \| Ischemic stroke \| 2 HP:0001920 \| Renal artery stenosis \| 2 HP:0100653 \| Optic neuritis \| 2 HP:0012490 \| Inflammation of fat tissue \| 2 HP:0008200 \| Primary hyperparathyroidism \| 2 HP:0000126 \| Hydronephrosis \| 1 HP:0009926 \| Epiphora \| 1 HP:0030766 \| Otalgia \| 1 HP:0100702 \| Arachnoid cyst \| 1 HP:0003198 \| Myopathic changes \| 1 HP:0001631 \| Atria septal defect \| 1 HP:0001635 \| Congestive heart failure \| 1 HP:0100607 \| Painful menstruation \| 1 HP:0005318 \| Cerebral vasculitis \| 1 HP:0030882 \| Enlargement of the diameter (cross-section) of a coronary artery. \| 1 HP:0006515 \| Interstitial pneumonitis \| 1 HP:0003326 \| Muscle pain \| 1 HP:0000121 \| Nephrocalcinosis \| 1 HP:0011944 \| Small vessel vasculitis \| 1 HP:0005206 \| Pancreatic pseudocyst \| 1 HP:0001649 \| Tachycardia \| 1 HP:0010566 \| Hamartoma \| 1 HP:0012203 \| Onychomycosis \| 1 HP:0001342 \| Intracerebral hemorrhage \| 1 HP:0002890 \| Thyroid carcinoma \| 1 HP:0001097 \| Keratoconjunctivitis sicca \| 1 HP:0001751 \| Vestibular dysfunction \| 1 HP:0200043 \| Verrucae \| 1 HP:0003073 \| Hypoalbuminaemia \| 1 HP:0001279 \| Syncope \| 1 HP:0000627 \| Embryotoxon \| 1 HP:0002360 \| Sleep disturbance \| 1 HP:0030065 \| Primitive neuroectodermal tumor \| 1 HP:0006824 \| Cranial nerve palsy \| 1 HP:0100769 \| Synovitis \| 1 HP:0000077 \| Renal anomaly \| 1 HP:0007340 \| Lower limb weakness \| 1 HP:0004934 \| Vascular calcification \| 1 HP:0011900 \| Hypofibrinogenemia \| 1 HP:0004859 \| Amegakaryocytic thrombocytopenia \| 1 HP:0030731 \| Carcinoma \| 1 HP:0000651 \| Diplopia \| 1 HP:0007618 \| Subcutaneous calcification \| 1 HP:0002861 \| Melanoma \| 1 HP:0000938 \| Decreased bone mineral density \| 1 HP:0001650 \| Valvular aortic stenosis \| 1 HP:0000518 \| Cataract \| 1 HP:0100534 \| Episcleritis \| 1 HP:0012588 \| Steroid-resistant nephrotic syndrome \| 1 HP:0006530 \| Interstitial lung disease \| 1 HP:0001596 \| Hair loss \| 1 HP:0011855 \| Pharyngeal edema \| 1 HP:0012126 \| Gastric cancer \| 1 HP:0100718 \| Uterine rupture \| 1 HP:0005305 \| Cerebral vein thrombosis \| 1 HP:0000956 \| Keratosis nigricans \| 1 HP:0030069 \| Primary central nervous system lymphoma \| 1 HP:0012579 \| Minimal change glomerulonephritis \| 1 HP:0002895 \| Papillary thyroid carcinoma \| 1 HP:0002045 \| Abnormally low body temperature \| 1 HP:0100033 \| Tic disorder \| 1 HP:0001004 \| Lymphatic obstruction \| 1 HP:0001513 \| Obesity \| 1 HP:0003641 \| Hemoglobin in urine \| 1 HP:0011450 \| CNS infection \| 1 HP:0001622 \| Premature delivery \| 1 HP:0000097 \| focal glomerulosclerosis \| 1 HP:0000407 \| sensorineural hearing loss \| 1 HP:0100699 \| Scarring \| 1 HP:0000704 \| Pyorrhea \| 1 HP:0030833 \| Neck pain \| 1 HP:0012085 \| High urine neutrophil count \| 1 HP:0012636 \| Retinal vein occlusion \| 1 HP:0002625 \| Blood clot in a deep vein \| 1 HP:0007018 \| Attention deficits \| 1 HP:0012727 \| Thoracic aortic aneurysm \| 1 HP:0002093 \| progressive respiratory failure \| 1 HP:0002634 \| Arteriosclerosis \| 1 HP:0002910 \| Elevated transaminases \| 1 HP:0002716 \| Lymph node hyperplasia \| 1 HP:0002242 \| Enteropathy \| 1 HP:0001047 \| Atopic dermatitis \| 1 HP:0005942 \| Desquamative interstitial pneumonitis \| 1 HP:0006689 \| Bacterial endocarditis \| 1 HP:0002907 \| Microhematuria \| 1 HP:0100532 \| Scleritis \| 1 HP:0004395 \| Malnutrition \| 1 HP:0001251 \| Ataxia \| 1 HP:0004326 \| Cachexia \| 1 HP:0011034 \| Amyloid disease \| 1 HP:0001287 \| Meningitis \| 1 HP:0011096 \| Demyelination \| 1 HP:0001647 \| Bicuspid aortic valve \| 1 HP:0012281 \| Chylous ascites \| 1 HP:0012089 \| Arteritis \| 1 HP:0002273 \| Tetraparesis \| 1 HP:0000790 \| Hematuria \| 1 HP:0000238 \| Nonsyndromal hydrocephalus \| 1 HP:0002015 \| Swallowing difficulty \| 1 HP:0000135 \| Hypogonadism \| 1 HP:0012344 \| Morphea \| 1 HP:0001132 \| Lens subluxation \| 1 HP:0000141 \| Abnormal absence of menstruation \| 1 HP:0001663 \| Ventricular fibrillation \| 1 HP:0001928 \| Abnormal blood coagulation studies \| 1 HP:0002072 \| Chorea \| 1 HP:0100754 \| Mania \| 1 HP:0002908 \| Conjugated hyperbilirubinemia \| 1 HP:0000078 \| Genital abnormalities \| 1 HP:0002922 \| Increased CSF protein \| 1 HP:0003193 \| Allergic rhinitis \| 1 HP:0002500 \| Leukoaraiosis \| 1 HP:0012384 \| Nasal inflammation \| 1 HP:0001363 \| Early fusion of cranial sutures \| 1 HP:0012133 \| Erythroid hypoplasia \| 1 HP:0010280 \| Stomatitis \| 1 HP:0000789 \| Infertility \| 1 HP:0001909 \| Leukemia \| 1 HP:0004818 \| Paroxysmal nocturnal hemoglobinuria \| 1 HP:0007302 \| Bipolar disorder \| 1 HP:0000872 \| Hashimoto's thyroiditis \| 1 HP:0100602 \| Pre-eclampsia \| 1 HP:0002383 \| Encephalitis \| 1 HP:0012191 \| B-cell lymphoma \| 1 HP:0012125 \| Prostate cancer \| 1 HP:0000829 \| Hypoparathyroidism \| 1 HP:0001045 \| Blotchy loss of skin color \| 1 HP:0012740 \| Papilloma \| 1 HP:0002170 \| Intracranial hemorrhage \| 1 HP:0001324 \| Muscular weakness \| 1 HP:0030692 \| Brain tumor \| 1 HP:0004969 \| peripheral pulmonary stenosis \| 1 HP:0002059 \| Degeneration of cerebrum \| 1 HP:0004420 \| Arterial thrombosis \| 1 HP:0100633 \| Inflammation of the esophagus \| 1 HP:0005743 \| Perthes-like femoral head changes \| 1 HP:0002343 \| Normal-pressure hydrocephalus \| 1 HP:0006859 \| Posterior leukoencephalopathy \| 1 HP:0002232 \| Patchy alopecia \| 1 HP:0010302 \| Tumor of the spinal cord \| 1 HP:0011834 \| Moyamoya phenomenon \| 1 HP:0002647 \| Aortic dissection \| 1 HP:0100310 \| Extradural hematoma \| 1 HP:0001943 \| Hypoglycemia \| 1 HP:0001627 \| Congenital heart defects \| 1 HP:0030127 \| Endometriosis \| 1 HP:0006775 \| Multiple myeloma \| 1 HP:0030049 \| Brain abscess \| 1 HP:0011695 \| Cerebellar hemorrhage \| 1 HP:0012735 \| Coughing \| 1 HP:0000490 \| Sunken eyes \| 1 HP:0000096 \| Glomerulosclerosis \| 1 HP:0012819 \| Myocarditis \| 1 HP:0002894 \| Neoplasia of the pancreas \| 1 HP:0012075 \| Personality disorder \| 1 HP:0000252 \| Small head circumference \| 1 HP:0002729 \| Follicular hyperplasia \| 1 HP:0009771 \| Acro-osteolysis \| 1 HP:0000815 \| Primary hypogonadism \| 1 HP:0001263 \| Developmental retardation \| 1 HP:0002204 \| Pulmonary embolism \| 1 HP:0000867 \| Secondary hyperparathyroidism \| 1 HP:0012156 \| Hemophagocytosis \| 1 HP:0002904 \| High blood bilirubin levels \| 1 HP:0003072 \| Hypercalcemia \| 1 HP:0002326 \| TIA \| 1 HP:0000823 \| Pubertal delay \| 1 HP:0001947 \| Renal tubular acidosis \| 1 HP:0003470 \| Inability to move \| 1 HP:0001061 \| Acne \| 1 HP:0030838 \| Hip pain \| 1

Disease ID	879
Disease	lupus erythematosus, systemic
Manually Symptom	(Waiting for update.)
Text Mined Symptom	UMLS \| Name \| Sentences' Count(Total Symptoms:305) C0004153 \| atherosclerosis \| 41 C0027697 \| nephritis \| 39 C0009450 \| infection \| 34 C0024143 \| lupus nephritis \| 27 C0020538 \| hypertension \| 23 C0042373 \| vascular disease \| 23 C0042384 \| vasculitis \| 23 C0796095 \| c syndrome \| 22 C0040034 \| thrombocytopenia \| 18 C0085278 \| antiphospholipid syndrome \| 18 C0019080 \| hemorrhage \| 17 C0022658 \| renal disease \| 16 C0003864 \| arthritis \| 16 C0021311 \| infections \| 15 C0015672 \| fatigue \| 15 C0007222 \| cardiovascular disease \| 14 C0040053 \| thrombosis \| 13 C0020542 \| pulmonary hypertension \| 12 C0017658 \| glomerulonephritis \| 12 C0034150 \| purpura \| 11 C0034153 \| thrombocytopenic purpura \| 10 C0011570 \| depression \| 10 C0033975 \| psychosis \| 9 C0041296 \| tuberculosis \| 9 C0034155 \| thrombotic thrombocytopenic purpura \| 9 C0038454 \| stroke \| 8 C0042769 \| virus infection \| 8 C0030305 \| pancreatitis \| 7 C0022658 \| nephropathy \| 7 C0948265 \| metabolic syndrome \| 7 C0018681 \| headache \| 7 C1839611 \| n syndrome \| 6 C0442874 \| neuropathy \| 6 C0002940 \| aneurysm \| 6 C0002871 \| anemia \| 6 C0233401 \| psychiatric symptoms \| 6 C0085584 \| encephalopathy \| 6 C1619734 \| pulmonary arterial hypertension \| 5 C0231303 \| distress \| 5 C0024291 \| hemophagocytic syndrome \| 5 C0032285 \| pneumonia \| 5 C0856169 \| endothelial dysfunction \| 5 C0018799 \| heart disease \| 5 C0577631 \| carotid atherosclerosis \| 5 C0002940 \| aneurysms \| 4 C0002874 \| aplastic anemia \| 4 C0031117 \| peripheral neuropathy \| 4 C0024115 \| pulmonary disease \| 4 C0027051 \| myocardial infarction \| 4 C0270612 \| leukoencephalopathy \| 4 C0003467 \| anxiety \| 4 C0035309 \| retinopathy \| 4 C0162855 \| mucinosis \| 4 C0004030 \| aspergillosis \| 4 C0155626 \| acute myocardial infarction \| 4 C0002871 \| anaemia \| 4 C0026975 \| myelitis \| 4 C0030193 \| pain \| 4 C0014544 \| epilepsy \| 4 C0019360 \| herpes zoster \| 4 C0024299 \| lymphoma \| 4 C0026896 \| myasthenia gravis \| 4 C0007398 \| catatonia \| 3 C0022408 \| arthropathy \| 3 C0040128 \| thyroid disease \| 3 C2717961 \| thrombotic microangiopathy \| 3 C0032231 \| pleuritis \| 3 C0022658 \| kidney disease \| 3 C0001339 \| acute pancreatitis \| 3 C0034902 \| pure red cell aplasia \| 3 C0019163 \| hepatitis b \| 3 C0022735 \| klinefelter's syndrome \| 3 C0852949 \| arterial disease \| 3 C0011603 \| dermatitis \| 3 C0010068 \| coronary heart disease \| 3 C0019682 \| human immunodeficiency virus \| 3 C0027947 \| neutropenia \| 3 C0007642 \| cellulitis \| 3 C0010068 \| coronary artery disease \| 3 C0026946 \| fungal infection \| 3 C0026976 \| transverse myelitis \| 3 C0023895 \| liver disease \| 3 C0033860 \| psoriasis \| 3 C0021847 \| intestinal pseudo-obstruction \| 3 C0037140 \| b virus infection \| 3 C0015967 \| fever \| 3 C0151267 \| mesenteric vasculitis \| 3 C0017661 \| iga nephropathy \| 3 C0027813 \| neuritis \| 3 C0152084 \| jaccoud's arthropathy \| 3 C0263627 \| calcinosis cutis universalis \| 3 C0035078 \| renal failure \| 3 C0410000 \| overlap syndrome \| 3 C0034735 \| raynaud's phenomenon \| 3 C0032962 \| pregnancy complications \| 3 C0015230 \| rash \| 3 C0026654 \| moyamoya syndrome \| 2 C0009319 \| colitis \| 2 C0039263 \| takayasu's arteritis \| 2 C0003874 \| septic arthritis \| 2 C0085278 \| antiphospholipid antibody syndrome \| 2 C0034069 \| pulmonary fibrosis \| 2 C0272242 \| complement deficiency \| 2 C0021655 \| insulin resistance syndrome \| 2 C0027873 \| devic's syndrome \| 2 C0241910 \| autoimmune hepatitis \| 2 C0038525 \| subarachnoid hemorrhage \| 2 C0002880 \| autoimmune hemolytic anemia \| 2 C0003486 \| aortic aneurysm \| 2 C0242584 \| autoimmune thrombocytopenia \| 2 C0003504 \| aortic regurgitation \| 2 C0029456 \| osteoporosis \| 2 C0262988 \| cutaneous vasculitis \| 2 C0272286 \| immune thrombocytopenia \| 2 C0000727 \| acute abdomen \| 2 C0010054 \| coronary atherosclerosis \| 2 C0042870 \| vitamin d deficiency \| 2 C0022116 \| ischemia \| 2 C0017086 \| gangrene \| 2 C0032227 \| pleural effusions \| 2 C0029134 \| optic neuritis \| 2 C0000737 \| abdominal pain \| 2 C1393529 \| vascular complications \| 2 C0019693 \| human immunodeficiency virus infection \| 2 C0033680 \| protein-losing enteropathy \| 2 C0000786 \| miscarriage \| 2 C0037928 \| myelopathy \| 2 C0019158 \| hepatitis \| 2 C0032326 \| pneumothorax \| 2 C0042487 \| venous thrombosis \| 2 C1402315 \| vascular lesions \| 2 C0032285 \| pneumonitis \| 2 C0036572 \| seizures \| 2 C0032285 \| pneumoniae \| 2 C0149931 \| migraine \| 2 C0740577 \| acute abdominal pain \| 2 C0020676 \| hypothyroidism \| 2 C0040100 \| thymoma \| 2 C0023524 \| progressive multifocal leukoencephalopathy \| 2 C1273070 \| left ventricular diastolic dysfunction \| 2 C0007115 \| thyroid cancer \| 2 C0155765 \| microangiopathy \| 2 C0155733 \| aortic atherosclerosis \| 2 C0151450 \| secondary sjogren's syndrome \| 2 C0398367 \| kikuchi-fujimoto disease \| 2 C0086132 \| depressive symptoms \| 2 C0027726 \| nephrotic syndrome \| 2 C0031046 \| pericarditis \| 2 C0151740 \| intracranial hypertension \| 2 C0001815 \| myelofibrosis \| 2 C0002878 \| hemolytic anemia \| 2 C0055781 \| circulating anticoagulants \| 2 C0018824 \| valvular heart disease \| 2 C0024312 \| lymphopenia \| 2 C0024115 \| lung disease \| 2 C1384666 \| hearing loss \| 2 C0004623 \| bacterial infection \| 2 C0027051 \| myocardial infarct \| 2 C0022661 \| end-stage renal disease \| 2 C0748159 \| pulmonary involvement \| 2 C0008521 \| choroidopathy \| 2 C0014118 \| endocarditis \| 2 C0149678 \| epstein-barr virus infection \| 1 C0406594 \| cytophagic histiocytic panniculitis \| 1 C0032227 \| pleural effusion \| 1 C0238051 \| cerebral vasculitis \| 1 C0017665 \| membranous nephropathy \| 1 C0021079 \| immunosuppression \| 1 C0019655 \| histoplasmosis \| 1 C0010266 \| cranial neuropathy \| 1 C0272362 \| acquired von willebrand syndrome \| 1 C0340643 \| aortic dissection \| 1 C0037284 \| skin lesion \| 1 C0679466 \| cognitive deficits \| 1 C0023860 \| listeria monocytogenes infection \| 1 C0008489 \| chorea \| 1 C0280803 \| primary central nervous system lymphoma \| 1 C0677607 \| hashimoto's thyroiditis \| 1 C0152026 \| retinal vasculitis \| 1 C0040261 \| onychomycosis \| 1 C0348024 \| thyroid dysfunction \| 1 C0264684 \| coronary arteritis \| 1 C0002453 \| amenorrhea \| 1 C0040128 \| thyroid disorders \| 1 C0221002 \| primary hyperparathyroidism \| 1 C0030299 \| pancreatic pseudocysts \| 1 C1096116 \| acquired hemophilia \| 1 C0085240 \| lupus anticoagulant \| 1 C0026914 \| mycobacterium avium complex \| 1 C1304408 \| urticarial vasculitis \| 1 C0175696 \| g syndrome \| 1 C0730328 \| central serous chorioretinopathy \| 1 C0017665 \| membranous glomerulonephritis \| 1 C0022656 \| renal cortical necrosis \| 1 C0010051 \| coronary aneurysm \| 1 C0232197 \| fibrillation \| 1 C0085273 \| parvovirus b19 infection \| 1 C0010823 \| cytomegalovirus infection \| 1 C0263625 \| subcutaneous calcification \| 1 C0006105 \| brain abscesses \| 1 C0020258 \| normal pressure hydrocephalus \| 1 C0752303 \| urological manifestations \| 1 C0270707 \| kluver-bucy syndrome \| 1 C0002991 \| dermatofibromas \| 1 C0034065 \| pulmonary embolism \| 1 C0242339 \| dyslipidemia \| 1 C0012569 \| diplopia \| 1 C0007177 \| cardiac tamponade \| 1 C0029896 \| ent disease \| 1 C0014038 \| encephalitis \| 1 C0024143 \| lupus glomerulonephritis \| 1 C0007758 \| cerebellar ataxia \| 1 C1609538 \| latent tuberculosis \| 1 C0018801 \| heart failure \| 1 C0031039 \| pericardial effusions \| 1 C0019360 \| herpes zoster infection \| 1 C0010414 \| cryptococcosis \| 1 C0851578 \| sleep disorders \| 1 C0026718 \| mucormycosis \| 1 C0018799 \| cardiac disease \| 1 C0024228 \| lymphadenopathy \| 1 C0041327 \| pulmonary tuberculosis \| 1 C0151942 \| arterial thrombosis \| 1 C0020626 \| hypoparathyroidism \| 1 C1504439 \| reversible posterior leukoencephalopathy syndrome \| 1 C0751878 \| cns vasculitis \| 1 C0235618 \| proliferative glomerulonephritis \| 1 C0700376 \| pulmonary amyloidosis \| 1 C0002726 \| amyloidosis \| 1 C0262576 \| nerve palsy \| 1 C0020598 \| hypoglycemia \| 1 C0002170 \| alopecia \| 1 C0019348 \| herpes simplex \| 1 C0948089 \| acute coronary syndrome \| 1 C0018944 \| hematoma \| 1 C1288283 \| anetoderma \| 1 C0221505 \| brain lesions \| 1 C0032305 \| pneumocystis carinii pneumonia \| 1 C0149871 \| deep venous thrombosis \| 1 C0235946 \| cerebral atrophy \| 1 C0033687 \| proteinuria \| 1 C0039103 \| synovitis \| 1 C0151945 \| cerebral venous thrombosis \| 1 C0003972 \| atherosclerotic cardiovascular disease \| 1 C0524702 \| pulmonary thromboembolism \| 1 C0876991 \| hemophagocytosis \| 1 C0036572 \| seizure \| 1 C1262481 \| eosinophilic gastroenteritis \| 1 C0018784 \| sensorineural hearing loss \| 1 C0238356 \| perihepatitis \| 1 C0206062 \| interstitial lung disease \| 1 C1960277 \| shrinking lung syndrome \| 1 C0038463 \| strongyloidiasis \| 1 C0271707 \| autoimmune hypoglycemia \| 1 C0034359 \| pyuria \| 1 C0007847 \| cervical cancer \| 1 C0026848 \| myopathy \| 1 C0007688 \| central retinal artery occlusion \| 1 C0178468 \| autoimmune thyroid disease \| 1 C0262405 \| brain dysfunction \| 1 C0040188 \| tic disorders \| 1 C0003486 \| aortic aneurysms \| 1 C0025289 \| meningitis \| 1 C0020437 \| hypercalcaemia \| 1 C0014121 \| infective endocarditis \| 1 C0240111 \| arthritis of the knee \| 1 C1290884 \| inflammatory disease \| 1 C0151744 \| myocardial ischemia \| 1 C1963829 \| lupus enteritis \| 1 C0002874 \| aplastic anaemia \| 1 C0162566 \| porphyria cutanea tarda \| 1 C0162323 \| polyarthritis \| 1 C0026764 \| multiple myeloma \| 1 C0950124 \| papilloma virus infection \| 1 C2609250 \| palisaded neutrophilic granulomatous dermatitis \| 1 C0031099 \| periodontitis \| 1 C0031117 \| peripheral neuropathies \| 1 C0152966 \| pneumococcal septicaemia \| 1 C0158026 \| monoarthritis \| 1 C0020255 \| hydrocephalus \| 1 C0041188 \| tropical pyomyositis \| 1 C0002878 \| haemolytic anaemia \| 1 C0014518 \| toxic epidermal necrolysis \| 1 C0027059 \| myocarditis \| 1 C0042373 \| vascular disorders \| 1 C0000833 \| abscess \| 1 C0409983 \| secondary antiphospholipid syndrome \| 1 C0238124 \| necrotizing fasciitis \| 1 C0007684 \| central nervous system infection \| 1 C0206093 \| primitive neuroectodermal tumor \| 1 C0744422 \| diffuse proliferative glomerulonephritis \| 1 C0162538 \| selective iga deficiency \| 1 C0338430 \| limbic encephalitis \| 1 C0004093 \| weakness \| 1 C0206061 \| interstitial pneumonitis \| 1 C0037317 \| sleep disturbances \| 1 C0026946 \| fungal infections \| 1 C0018552 \| hamartoma \| 1 C0031039 \| pericardial effusion \| 1 C0040038 \| thromboembolism \| 1 C0522224 \| palsy \| 1 C0752303 \| urological manifestation \| 1 C0398639 \| amegakaryocytic thrombocytopenia \| 1 C0038325 \| stevens-johnson syndrome \| 1 C0270627 \| acute transverse myelitis \| 1

Manually Genotype(Total Text Mining Genotypes:0)
(Waiting for update.)

All Snps(Total Genotypes:536)
snpId	pubmedId	geneId	geneSymbol	diseaseId	sourceId	sentence	score	Year	geneSymbol_dbSNP	CHROMOSOME	POS	REF	ALT
rs10036748	22694930	10318	TNIP1	umls:C0024141	BeFree	The T allele of rs10036748 in the TNIP1 gene is the minor protective allele for asthma but the minor or major risk allele for systemic lupus erythematosus and systemic sclerosis in non-Hispanic white or Chinese subjects, respectively.	0.249544073	2012	TNIP1	5	151078585	C	T
rs10036748	23911423	7128	TNFAIP3	umls:C0024141	BeFree	Associations of TNFAIP3 rs2230926 (p=1.43 × 10(-3)) and TNIP1 rs10036748 (p=4.33 × 10(-3)) with SLE were replicated in our study.	0.268175211	2013	TNIP1	5	151078585	C	T
rs10036748	19838193	10318	TNIP1	umls:C0024141	GAD	[Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.]	0.249544073	2009	TNIP1	5	151078585	C	T
rs10036748	19838193	10318	TNIP1	umls:C0024141	GWASCAT	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	0.249544073	2009	TNIP1	5	151078585	C	T
rs10036748	20516000	10318	TNIP1	umls:C0024141	BeFree	Significant associations were found for the single nucleotide polymorphism rs10036748 of TNIP1 with photosensitivity (odds ratio (OR) = 0.87, p = 0.01) and vasculitis (OR = 1.18, p = 0.04); rs10847697 of SLC15A4 with discoid rash (OR = 1.18, p = 0.02); rs6590330 of ETS1 with SLE of age at diagnosis <20 years (OR = 1.24, p = 8.91 x 10(-5)); rs13385731 of RasGRP3 with malar rash (OR = 1.20, p = 0.01), discoid rash (OR = 0.78, p = 0.02) and ANA (OR = 0.72, p = 0.004); rs4917014 of IKZF1 with renal nephritis (OR = 1.13, p = 0.02) and malar rash (OR = 0.83, p = 0.00038), respectively.	0.249544073	2010	TNIP1	5	151078585	C	T
rs10036748	20516000	121260	SLC15A4	umls:C0024141	BeFree	Significant associations were found for the single nucleotide polymorphism rs10036748 of TNIP1 with photosensitivity (odds ratio (OR) = 0.87, p = 0.01) and vasculitis (OR = 1.18, p = 0.04); rs10847697 of SLC15A4 with discoid rash (OR = 1.18, p = 0.02); rs6590330 of ETS1 with SLE of age at diagnosis <20 years (OR = 1.24, p = 8.91 x 10(-5)); rs13385731 of RasGRP3 with malar rash (OR = 1.20, p = 0.01), discoid rash (OR = 0.78, p = 0.02) and ANA (OR = 0.72, p = 0.004); rs4917014 of IKZF1 with renal nephritis (OR = 1.13, p = 0.02) and malar rash (OR = 0.83, p = 0.00038), respectively.	0.24554839	2010	TNIP1	5	151078585	C	T
rs10168266	24741605	6775	STAT4	umls:C0024141	BeFree	The meta-analysis of STAT4 rs10168266, which combined the data of other studies and this study, further confirmed its importance as the risk factor for SLE by having pooled OR of 1.559 and P value of <0.001.	0.324188178	2013	STAT4	2	191071078	C	T
rs10181656	19762360	6775	STAT4	umls:C0024141	BeFree	To investigate whether the risk allele for systemic lupus erythematosus (SLE) in the signal transducer and activator of transcription factor 4 (STAT4) gene, defined by the single nucleotide polymorphism (SNP) rs10181656(G), is associated with vascular events and/or presence of prothrombotic anti-phospholipid antibodies (aPL) in patients with SLE.	0.324188178	2010	STAT4	2	191105153	G	C
rs1024611	24968246	6347	CCL2	umls:C0024141	BeFree	Relationship between MCP-1 promoter -2518 A/G gene polymorphism (rs1024611) and systemic lupus erythematosus/lupus nephritis.	0.027532638	2016	NA	17	34252769	A	G
rs1042522	19074170	7157	TP53	umls:C0024141	BeFree	Lack of association of the TP53 Arg72Pro SNP and the MDM2 SNP309 with systemic lupus erythematosus in Caucasian, African American, and Asian children and adults.	0.008815624	2009	TP53	17	7676154	G	T,C
rs10488631	21408207	3663	IRF5	umls:C0024141	GAD	[SNPs in the previously identified SLE susceptibility loci STAT4, IRF5, ITGAM, and the major histocompatibility complex were strongly associated with anti-dsDNA + SLE.]	0.234583243	2011	TNPO3	7	128954129	T	C
rs10488631	18204098	23534	TNPO3	umls:C0024141	GWASCAT	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	0.12973957	2008	TNPO3	7	128954129	T	C
rs10488631	21408207	23534	TNPO3	umls:C0024141	GWASCAT	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	0.12973957	2011	TNPO3	7	128954129	T	C
rs10488631	24871463	23534	TNPO3	umls:C0024141	GWASCAT	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	0.12973957	2014	TNPO3	7	128954129	T	C
rs10488631	21408207	23534	TNPO3	umls:C0024141	GAD	[Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.]	0.12973957	2011	TNPO3	7	128954129	T	C
rs10488631	NA	23534	TNPO3	umls:C0024141	GAD	NA	0.12973957	NA	TNPO3	7	128954129	T	C
rs10488631	18204098	23534	TNPO3	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.12973957	2008	TNPO3	7	128954129	T	C
rs1050501	25022320	2213	FCGR2B	umls:C0024141	BeFree	A single nucleotide polymorphism in human FcγRIIB (rs1050501) results in profound receptor dysfunction and is associated with systemic lupus erythematosus.	0.246507282	2014	FCGR2B	1	161674008	T	C
rs1050501	25475856	2213	FCGR2B	umls:C0024141	BeFree	In humans, a SLE-associated polymorphism (rs1050501) results in a dysfunctional FcγRIIB(T232) receptor.	0.246507282	2015	FCGR2B	1	161674008	T	C
rs1050501	17305544	2213	FCGR2B	umls:C0024141	BeFree	In FCGR2B encoding an inhibitory receptor expressed in B cells, monocytes and dendritic cells, a polymorphism within the transmembrane region, Ile232Thr, was identified and found to be associated with susceptibility to SLE in three Asian populations.	0.246507282	2007	FCGR2B	1	161674008	T	C
rs10516487	19180476	55024	BANK1	umls:C0024141	BeFree	To investigate 1 functional (rs17266594) and 2 potentially functional (rs10516487 and rs3733197) BANK1 variants, which were previously identified as systemic lupus erythematosus (SLE) susceptibility markers, to test whether they are associated with rheumatoid arthritis (RA).	0.264646467	2009	BANK1	4	101829919	G	T,A
rs10516487	21078628	6737	TRIM21	umls:C0024141	BeFree	This study implies that rs10516487 and rs17266594 polymorphisms might contribute to individual susceptibility to SLE and influence the ANA/SSA autoantibody response in SLE patients in Chinese population.	0.022473594	2011	BANK1	4	101829919	G	T,A
rs10516487	21900951	55024	BANK1	umls:C0024141	BeFree	The dual effect of the lupus-associated polymorphism rs10516487 on BANK1 gene expression and protein localization.	0.264646467	2012	BANK1	4	101829919	G	T,A
rs10516487	20881011	55024	BANK1	umls:C0024141	GAD	[The genetic contribution towards predicting early-onset disease in patients with SLE is quantified for the first time. A more severe SLE phenotype is found in patients with early-onset disease in a large multi-racial cohort, independent of gender, race an]	0.264646467	2011	BANK1	4	101829919	G	T,A
rs10516487	18204447	55024	BANK1	umls:C0024141	GAD	[Functional variants in the B-cell gene BANK1 are associated with systemic lupus erythematosus.]	0.264646467	2008	BANK1	4	101829919	G	T,A
rs10516487	25882064	3447	IFNA13	umls:C0024141	BeFree	Using a list of 11 single nucleotide polymorphisms from the results of genome-wide association studies for systemic lupus erythematosus, which we hypothesised would be enriched in variants that regulate type-I IFN production, we identified a genetic risk score based on 3 single nucleotide polymorphisms (rs10516487, rs3131379 and rs7574865), which correlated significantly with production of IFN-α by human peripheral leukocytes stimulated with CpG-oligonucleotide (n=60, P=1.50 × 10(-5)).	0.022801117	2015	BANK1	4	101829919	G	T,A
rs10516487	18204447	55024	BANK1	umls:C0024141	GWASCAT	Functional variants in the B-cell gene BANK1 are associated with systemic lupus erythematosus.	0.264646467	2008	BANK1	4	101829919	G	T,A
rs10516487	21078628	10950	BTG3	umls:C0024141	BeFree	This study implies that rs10516487 and rs17266594 polymorphisms might contribute to individual susceptibility to SLE and influence the ANA/SSA autoantibody response in SLE patients in Chinese population.	0.001900093	2011	BANK1	4	101829919	G	T,A
rs1051792	21702010	100507436	MICA	umls:C0024141	BeFree	Japanese patients with SLE (n=716), those with rheumatoid arthritis (RA) (n=327), and healthy control subjects (n=351) were genotyped for the Val129 Met polymorphism (rs1051792) and transmembrane (TM) alanine-encoding GCT repeats, termed A4, A5, A5.1, A6, and A9, in the MICA gene.	0.003724241	2011	MICA	6	31411200	G	A
rs1051792	21702010	25797	QPCT	umls:C0024141	BeFree	Japanese patients with SLE (n=716), those with rheumatoid arthritis (RA) (n=327), and healthy control subjects (n=351) were genotyped for the Val129 Met polymorphism (rs1051792) and transmembrane (TM) alanine-encoding GCT repeats, termed A4, A5, A5.1, A6, and A9, in the MICA gene.	0.000271442	2011	MICA	6	31411200	G	A
rs1059702	23435933	3654	IRAK1	umls:C0024141	BeFree	Association of interleukin-1 receptor-associated kinase (IRAK1) gene polymorphisms (rs3027898, rs1059702) with systemic lupus erythematosus in a Chinese Han population.	0.011454097	2013	IRAK1	X	154018741	A	G
rs1061622	11169260	7133	TNFRSF1B	umls:C0024141	BeFree	Lack of association between the Met196Arg polymorphism in the TNFR2 gene and autoimmune diseases accompanied by vasculitis including SLE in Japanese.	0.032647765	2001	TNFRSF1B	1	12192898	T	G
rs1061622	11169260	7124	TNF	umls:C0024141	BeFree	A polymorphism in high-affinity receptor of TNF (TNFR2) gene, Met196Arg, was reported to be associated with systemic lupus erythematosus (SLE) in Japanese, whereas the association could not be found in Europeans at all and this represents an apparent discrepancy.	0.12094984	2001	TNFRSF1B	1	12192898	T	G
rs10798269	18204446	100506023	LOC100506023	umls:C0024141	GWASCAT	Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.	0.12	2008	LOC100506023	1	173340574	A	G,T
rs10798269	18204446	7292	TNFSF4	umls:C0024141	GAD	[Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.]	0.14801339	2008	LOC100506023	1	173340574	A	G,T
rs10818488	23321589	7185	TRAF1	umls:C0024141	BeFree	Association study of TRAF1/C5 polymorphism (rs10818488) with susceptibility to rheumatoid arthritis and systemic lupus erythematosus: a meta-analysis.	0.008729747	2013	NA	9	120942809	A	G
rs10845606	23273568	2842	GPR19	umls:C0024141	GWASCAT	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	0.12	2013	GPR19	12	12681960	C	A
rs10847697	20516000	121260	SLC15A4	umls:C0024141	BeFree	Significant associations were found for the single nucleotide polymorphism rs10036748 of TNIP1 with photosensitivity (odds ratio (OR) = 0.87, p = 0.01) and vasculitis (OR = 1.18, p = 0.04); rs10847697 of SLC15A4 with discoid rash (OR = 1.18, p = 0.02); rs6590330 of ETS1 with SLE of age at diagnosis <20 years (OR = 1.24, p = 8.91 x 10(-5)); rs13385731 of RasGRP3 with malar rash (OR = 1.20, p = 0.01), discoid rash (OR = 0.78, p = 0.02) and ANA (OR = 0.72, p = 0.004); rs4917014 of IKZF1 with renal nephritis (OR = 1.13, p = 0.02) and malar rash (OR = 0.83, p = 0.00038), respectively.	0.24554839	2010	SLC15A4	12	128814840	G	A
rs10847697	20516000	10318	TNIP1	umls:C0024141	BeFree	Significant associations were found for the single nucleotide polymorphism rs10036748 of TNIP1 with photosensitivity (odds ratio (OR) = 0.87, p = 0.01) and vasculitis (OR = 1.18, p = 0.04); rs10847697 of SLC15A4 with discoid rash (OR = 1.18, p = 0.02); rs6590330 of ETS1 with SLE of age at diagnosis <20 years (OR = 1.24, p = 8.91 x 10(-5)); rs13385731 of RasGRP3 with malar rash (OR = 1.20, p = 0.01), discoid rash (OR = 0.78, p = 0.02) and ANA (OR = 0.72, p = 0.004); rs4917014 of IKZF1 with renal nephritis (OR = 1.13, p = 0.02) and malar rash (OR = 0.83, p = 0.00038), respectively.	0.249544073	2010	SLC15A4	12	128814840	G	A
rs10865035	22983539	4299	AFF1	umls:C0024141	BeFree	Association of AFF1 rs340630 and AFF3 rs10865035 polymorphisms with systemic lupus erythematosus in a Chinese population.	0.122909916	2012	LINC01104	2	100219272	A	G
rs10865035	22983539	138883	OR1N1	umls:C0024141	BeFree	Significant evidence for association of AFF3 rs10865035 with SLE was detected (for A versus G, P = 4.81 × 10(-4), odds ratio (OR) 1.26, 95% confidence interval (95% CI) 1.11-1.44).	0.000271442	2012	LINC01104	2	100219272	A	G
rs10892301	24001599	1656	DDX6	umls:C0024141	BeFree	We discovered multiple susceptibility variants for SLE in the 11q23.3 region, including variants in/near PHLDB1 (rs11603023, P(_combined) = 1.25E-08, OR = 1.20), DDX6 (rs638893, P(_combined) = 5.19E-07, OR = 1.22) and CXCR5 (rs10892301, P(_combined) = 2.51E-08, OR = 0.85).	0.000271442	2014	NA	11	118864767	G	A
rs10892301	24001599	643	CXCR5	umls:C0024141	BeFree	We discovered multiple susceptibility variants for SLE in the 11q23.3 region, including variants in/near PHLDB1 (rs11603023, P(_combined) = 1.25E-08, OR = 1.20), DDX6 (rs638893, P(_combined) = 5.19E-07, OR = 1.22) and CXCR5 (rs10892301, P(_combined) = 2.51E-08, OR = 0.85).	0.001085767	2014	NA	11	118864767	G	A
rs10892301	24001599	23187	PHLDB1	umls:C0024141	BeFree	We discovered multiple susceptibility variants for SLE in the 11q23.3 region, including variants in/near PHLDB1 (rs11603023, P(_combined) = 1.25E-08, OR = 1.20), DDX6 (rs638893, P(_combined) = 5.19E-07, OR = 1.22) and CXCR5 (rs10892301, P(_combined) = 2.51E-08, OR = 0.85).	0.000271442	2014	NA	11	118864767	G	A
rs10947345	19851445	1388	ATF6B	umls:C0024141	BeFree	Sequential removal of SLE-associated DRB1 haplotypes revealed independent effects due to variation within OR2H2 (extended class I, rs362521, p = 0.006), CREBL1 (class III, rs8283, p = 0.01), and DQB2 (class II, rs7769979, p = 0.003, and rs10947345, p = 0.0004).	0.002638474	2009	NA	NA	NA	NA	NA
rs10947345	19851445	129831	RBM45	umls:C0024141	BeFree	Sequential removal of SLE-associated DRB1 haplotypes revealed independent effects due to variation within OR2H2 (extended class I, rs362521, p = 0.006), CREBL1 (class III, rs8283, p = 0.01), and DQB2 (class II, rs7769979, p = 0.003, and rs10947345, p = 0.0004).	0.010043349	2009	NA	NA	NA	NA	NA
rs10947345	19851445	7932	OR2H2	umls:C0024141	BeFree	Sequential removal of SLE-associated DRB1 haplotypes revealed independent effects due to variation within OR2H2 (extended class I, rs362521, p = 0.006), CREBL1 (class III, rs8283, p = 0.01), and DQB2 (class II, rs7769979, p = 0.003, and rs10947345, p = 0.0004).	0.002638474	2009	NA	NA	NA	NA	NA
rs10954213	23392701	3663	IRF5	umls:C0024141	BeFree	Association of rs10954213 polymorphisms and haplotype diversity in interferon regulatory factor 5 with systemic lupus erythematosus: a meta-analysis.	0.234583243	2014	IRF5	7	128949373	G	A
rs10971259	21437871	5764	PTN	umls:C0024141	BeFree	Association with SLE was confirmed for several genes, including those for the transmembrane receptor CD44 (CD44 [rs507230]; P = 3.98 × 10⁻¹²), the cytokine pleiotrophin (PTN [rs919581]; P = 5.38 × 10⁻⁴), the heat-shock protein DnaJ (DNAJA1 [rs10971259]; P = 6.31 × 10⁻³), and the nuclear import protein karyopherin α1 (KPNA [rs6810306]; P = 4.91 × 10⁻²).	0.000271442	2011	APTX	9	32978808	C	T
rs10971259	21437871	3301	DNAJA1	umls:C0024141	BeFree	Association with SLE was confirmed for several genes, including those for the transmembrane receptor CD44 (CD44 [rs507230]; P = 3.98 × 10⁻¹²), the cytokine pleiotrophin (PTN [rs919581]; P = 5.38 × 10⁻⁴), the heat-shock protein DnaJ (DNAJA1 [rs10971259]; P = 6.31 × 10⁻³), and the nuclear import protein karyopherin α1 (KPNA [rs6810306]; P = 4.91 × 10⁻²).	0.000271442	2011	APTX	9	32978808	C	T
rs11073328	24871463	283742	FAM98B	umls:C0024141	GWASCAT	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	0.12	2014	FAM98B	15	38472642	C	T
rs11101442	19165918	57705	WDFY4	umls:C0024141	GAD	[Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.]	0.128186863	2008	WDFY4	10	48728291	C	A,T
rs11243676	18204098	84628	NTNG2	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.002367032	2008	NTNG2	9	132221380	G	A
rs1127354	19129747	3704	ITPA	umls:C0024141	BeFree	Pro32Thr polymorphism of inosine triphosphate pyrophosphatase gene predicts efficacy of low-dose azathioprine for patients with systemic lupus erythematosus.	0.003181358	2009	ITPA	20	3213196	C	A,G,T
rs112741962	17660818	11277	TREX1	umls:C0024141	UNIPROT	Mutations in the gene encoding the 3'-5' DNA exonuclease TREX1 are associated with systemic lupus erythematosus.	0.251887361	2007	TREX1;SHISA5	3	48467394	G	C
rs1128334	20169177	2113	ETS1	umls:C0024141	GAD	[Genome-wide association study in Asian populations identifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosus.]	0.253539756	2010	ETS1;LOC105369566	11	128459064	C	T
rs1128334	20169177	2113	ETS1	umls:C0024141	GWASCAT	Genome-wide association study in Asian populations identifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosus.	0.253539756	2010	ETS1;LOC105369566	11	128459064	C	T
rs113107733	17660818	11277	TREX1	umls:C0024141	UNIPROT	Mutations in the gene encoding the 3'-5' DNA exonuclease TREX1 are associated with systemic lupus erythematosus.	0.251887361	2007	TREX1;SHISA5	3	48467334	G	A
rs1131665	21360504	57661	PHRF1	umls:C0024141	BeFree	We genotyped one KIAA1542 SNP (rs4963128) and one IRF7 SNP (rs1131665 [Q412R]) in an Asian population (1,302 cases, 1,479 controls), to assess their association with SLE.	0.256188161	2011	IRF7	11	613208	T	C
rs1133906	23740937	219285	SAMD9L	umls:C0024141	GWASCAT	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	0.12	2014	SAMD9L	7	93135669	C	T
rs1143679	19129174	3126	HLA-DRB4	umls:C0024141	BeFree	Secondly, using a comprehensive imputation-based association test, we found that ITGAM is one of the major non-human leukocyte antigen susceptibility genes for SLE, and the strongest association for EA is the same coding variant rs1143679 (log(10)Bayes factor=20, P = 6.17 x 10(-24)).	0.011911105	2009	ITGAM	16	31265490	G	A
rs1143679	20881011	3684	ITGAM	umls:C0024141	GAD	[The genetic contribution towards predicting early-onset disease in patients with SLE is quantified for the first time. A more severe SLE phenotype is found in patients with early-onset disease in a large multi-racial cohort, independent of gender, race an]	0.278729106	2011	ITGAM	16	31265490	G	A
rs1143679	20666624	3684	ITGAM	umls:C0024141	BeFree	ITGAM Arg77His is associated with disease susceptibility, arthritis, and renal symptoms in systemic lupus erythematosus patients from a sample of the Polish population.	0.278729106	2011	ITGAM	16	31265490	G	A
rs1143679	24269694	3684	ITGAM	umls:C0024141	BeFree	The variant of CD11b, rs1143679 within ITGAM, is associated with systemic lupus erythematosus and clinical manifestations in Brazilian patients.	0.278729106	2013	ITGAM	16	31265490	G	A
rs1143679	19939855	3684	ITGAM	umls:C0024141	BeFree	ITGAM coding variant (rs1143679) influences the risk of renal disease, discoid rash and immunological manifestations in patients with systemic lupus erythematosus with European ancestry.	0.278729106	2010	ITGAM	16	31265490	G	A
rs1143679	21454473	3684	ITGAM	umls:C0024141	BeFree	A systemic lupus erythematosus-associated R77H substitution in the CD11b chain of the Mac-1 integrin compromises leukocyte adhesion and phagocytosis.	0.278729106	2011	ITGAM	16	31265490	G	A
rs1143679	22586164	3684	ITGAM	umls:C0024141	BeFree	The rs1143679 (R77H) lupus associated variant of ITGAM (CD11b) impairs complement receptor 3 mediated functions in human monocytes.	0.278729106	2012	ITGAM	16	31265490	G	A
rs1143679	22523428	3684	ITGAM	umls:C0024141	BeFree	The A-allele of ICAM1-ICAM4-ICAM5 rs3093030, associated with elevated plasma levels of soluble ICAM1, and the A-allele of ITGAM rs1143679 showed the strongest association with increased SLE susceptibility in each of the ancestry populations and the trans-ancestry meta-analysis (OR(meta)=1.16, 95% CI 1.11 to 1.22; p=4.88×10(-10) and OR(meta)=1.67, 95% CI 1.55 to 1.79; p=3.32×10(-46), respectively).	0.278729106	2012	ITGAM	16	31265490	G	A
rs1143679	24608226	3684	ITGAM	umls:C0024141	BeFree	Combined protein- and nucleic acid-level effects of rs1143679 (R77H), a lupus-predisposing variant within ITGAM.	0.278729106	2015	ITGAM	16	31265490	G	A
rs1150754	21408207	7148	TNXB	umls:C0024141	GWASCAT	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	0.128001298	2011	TNXB	6	32082981	C	T
rs11540654	19074170	7157	TP53	umls:C0024141	BeFree	Lack of association of the TP53 Arg72Pro SNP and the MDM2 SNP309 with systemic lupus erythematosus in Caucasian, African American, and Asian children and adults.	0.008815624	2009	TP53	17	7676040	C	T,G,A
rs11552708	21984075	8741	TNFSF13	umls:C0024141	BeFree	We previously reported the association of APRIL haplotypes formed by two nonsynonymous polymorphisms, Gly67Arg and Asn96Ser, with systemic lupus erythematosus.	0.007077352	2012	TNFSF13;TNFSF12-TNFSF13	17	7559238	G	A
rs11568821	20881011	5133	PDCD1	umls:C0024141	GAD	[The genetic contribution towards predicting early-onset disease in patients with SLE is quantified for the first time. A more severe SLE phenotype is found in patients with early-onset disease in a large multi-racial cohort, independent of gender, race an]	0.180080714	2011	PDCD1;LOC105373977	2	241851760	C	T,G
rs11568821	17535987	5133	PDCD1	umls:C0024141	BeFree	Previous investigations have also demonstrated that an intronic polymorphism (termed PD1.3; SNP ID rs11568821) in the programmed cell death (PDCD1) gene was associated with systemic lupus erythematosus and rheumatoid arthritis.	0.180080714	2007	PDCD1;LOC105373977	2	241851760	C	T,G
rs11574637	18204098	3687	ITGAX	umls:C0024141	GWASCAT	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	0.24554839	2008	ITGAX	16	31357553	T	C
rs11574637	18204098	3687	ITGAX	umls:C0024141	GAD	[Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.]	0.24554839	2008	ITGAX	16	31357553	T	C
rs11574637	18204098	3684	ITGAM	umls:C0024141	GAD	[Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.]	0.278729106	2008	ITGAX	16	31357553	T	C
rs11603023	24001599	23187	PHLDB1	umls:C0024141	BeFree	We discovered multiple susceptibility variants for SLE in the 11q23.3 region, including variants in/near PHLDB1 (rs11603023, P(_combined) = 1.25E-08, OR = 1.20), DDX6 (rs638893, P(_combined) = 5.19E-07, OR = 1.22) and CXCR5 (rs10892301, P(_combined) = 2.51E-08, OR = 0.85).	0.000271442	2014	PHLDB1	11	118615352	T	C
rs11603023	24001599	1656	DDX6	umls:C0024141	BeFree	We discovered multiple susceptibility variants for SLE in the 11q23.3 region, including variants in/near PHLDB1 (rs11603023, P(_combined) = 1.25E-08, OR = 1.20), DDX6 (rs638893, P(_combined) = 5.19E-07, OR = 1.22) and CXCR5 (rs10892301, P(_combined) = 2.51E-08, OR = 0.85).	0.000271442	2014	PHLDB1	11	118615352	T	C
rs11603023	24001599	643	CXCR5	umls:C0024141	BeFree	We discovered multiple susceptibility variants for SLE in the 11q23.3 region, including variants in/near PHLDB1 (rs11603023, P(_combined) = 1.25E-08, OR = 1.20), DDX6 (rs638893, P(_combined) = 5.19E-07, OR = 1.22) and CXCR5 (rs10892301, P(_combined) = 2.51E-08, OR = 0.85).	0.001085767	2014	PHLDB1	11	118615352	T	C
rs1167796	19838193	3092	HIP1	umls:C0024141	GWASCAT	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	0.122367032	2009	HIP1	7	75543861	G	A
rs1167796	19838193	3092	HIP1	umls:C0024141	GAD	[Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.]	0.122367032	2009	HIP1	7	75543861	G	A
rs117480515	22488580	7128	TNFAIP3	umls:C0024141	BeFree	For TNFAIP3, we first demonstrated that a low-frequency variant, rs117480515, tagged the recently identified TT>A SLE dinucleotide.	0.268175211	2012	NA	NA	NA	NA	NA
rs11860650	23740937	3684	ITGAM	umls:C0024141	GWASCAT	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	0.278729106	2014	ITGAM	16	31315385	C	T
rs12141391	18204098	257194	NEGR1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.002367032	2008	NEGR1;NEGR1-IT1	1	71808790	C	A
rs12150220	22235789	22861	NLRP1	umls:C0024141	BeFree	Our results demonstrated that NLRP1 rs2670660 SNP and the NLRP1 rs12150220-rs2670660 A-G haplotype were associated with SLE in our study population, and in particular with the development of nephritis, rash and arthritis.	0.000542884	2012	NLRP1	17	5582047	A	T
rs12176317	18204098	11118	BTN3A2	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.002367032	2008	BTN3A2	6	26372558	A	G
rs12531711	21408207	23534	TNPO3	umls:C0024141	GWASCAT	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	0.12973957	2011	TNPO3	7	128977412	A	C,G
rs12531711	18204098	23534	TNPO3	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.12973957	2008	TNPO3	7	128977412	A	C,G
rs12531711	21408207	23534	TNPO3	umls:C0024141	GAD	[Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.]	0.12973957	2011	TNPO3	7	128977412	A	C,G
rs12531711	23053960	23534	TNPO3	umls:C0024141	GWASCAT	In the non-HLA region, meta-analysis identified 6 SNPs associated with SLE with genome-wide significance (STAT4, TNPO3, BLK, FAM167A, and IRF5).	0.12973957	2012	TNPO3	7	128977412	A	C,G
rs12537284	18204446	286016	TPI1P2	umls:C0024141	GAD	[Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.]	0.124734064	2008	NA	7	129077852	G	A
rs12537284	18204446	23534	TNPO3	umls:C0024141	GAD	[Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.]	0.12973957	2008	NA	7	129077852	G	A
rs12537284	NA	286016	TPI1P2	umls:C0024141	GAD	NA	0.124734064	NA	NA	7	129077852	G	A
rs12599402	23273568	23274	CLEC16A	umls:C0024141	GWASCAT	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	0.242367032	2013	CLEC16A	16	11096031	T	C
rs1264350	18204098	8870	IER3	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.007372538	2008	LINC00243	6	30828768	T	C
rs1270942	NA	629	CFB	umls:C0024141	GAD	NA	0.134202192	NA	CFB	6	31951083	A	G
rs1270942	21952918	3663	IRF5	umls:C0024141	BeFree	Importantly, our data suggest that in patients with lupus, the presence of the HLA lupus risk alleles in rs1270942 and rs3131379 increases the odds of also carrying the lupus risk allele in IRF5 (rs2070197) by 17% and 16%, respectively (P = 0.0028 and P = 0.0047, respectively).	0.234583243	2012	CFB	6	31951083	A	G
rs1270942	18204098	629	CFB	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.134202192	2008	CFB	6	31951083	A	G
rs12822507	23273568	1389	CREBL2	umls:C0024141	GWASCAT	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	0.12	2013	CREBL2	12	12620587	A	G
rs12949531	19165918	9955	HS3ST3A1	umls:C0024141	GAD	[Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.]	0.002367032	2008	LOC100506974	17	13830489	C	T
rs13023380	23441136	4691	NCL	umls:C0024141	BeFree	DNA carrying the intronic risk allele rs13023380 showed reduced binding efficiency to a cellular protein complex including nucleolin and lupus autoantigen Ku70/80, and showed reduced transcriptional activity in vivo.	0.000271442	2013	IFIH1	2	162297853	G	A
rs13023380	23441136	2547	XRCC6	umls:C0024141	BeFree	DNA carrying the intronic risk allele rs13023380 showed reduced binding efficiency to a cellular protein complex including nucleolin and lupus autoantigen Ku70/80, and showed reduced transcriptional activity in vivo.	0.000814326	2013	IFIH1	2	162297853	G	A
rs13146124	25285625	26246	OR2L2	umls:C0024141	BeFree	When the association was analyzed in 834 Japanese patients with SLE and 817 healthy controls, rs13146124 T was significantly increased in SLE compared with healthy controls (dominant model, P = 5.4×10(-4), Bonferroni-corrected P [Pc] = 0.026, odds ratio [OR] 1.48, 95% confidence interval [CI] 1.18-1.85).	0.000271442	2014	IRF2	4	184470254	G	A
rs131654	19838193	7332	UBE2L3	umls:C0024141	GWASCAT	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	0.126362715	2009	UBE2L3	22	21562901	G	T
rs131654	19838193	23119	HIC2	umls:C0024141	GAD	[Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.]	0.002367032	2009	UBE2L3	22	21562901	G	T
rs131654	19838193	150221	RIMBP3C	umls:C0024141	GAD	[Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.]	0.002367032	2009	UBE2L3	22	21562901	G	T
rs131654	19838193	7332	UBE2L3	umls:C0024141	GAD	[Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.]	0.126362715	2009	UBE2L3	22	21562901	G	T
rs13194781	18204098	8341	HIST1H2BN	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.004734064	2008	NA	6	27847861	A	G
rs13194781	NA	8341	HIST1H2BN	umls:C0024141	GAD	NA	0.004734064	NA	NA	6	27847861	A	G
rs13195509	18204098	11120	BTN2A1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.004734064	2008	BTN2A1	6	26463432	G	A
rs13195509	NA	11120	BTN2A1	umls:C0024141	GAD	NA	0.004734064	NA	BTN2A1	6	26463432	G	A
rs13197574	18204098	221584	ZSCAN12P1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.002367032	2008	ZSCAN12P1	6	28092461	T	C
rs13211507	18204098	84547	PGBD1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.004734064	2008	PGBD1	6	28289600	T	C
rs13211507	NA	84547	PGBD1	umls:C0024141	GAD	NA	0.004734064	NA	PGBD1	6	28289600	T	C
rs13239597	23740937	286016	TPI1P2	umls:C0024141	GWASCAT	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	0.124734064	2014	TNPO3;TPI1P2	7	129055929	C	A
rs13239597	23740937	23534	TNPO3	umls:C0024141	GWASCAT	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	0.12973957	2014	TNPO3;TPI1P2	7	129055929	C	A
rs13277113	18204098	640	BLK	umls:C0024141	GAD	[Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.]	0.272823399	2008	NA	8	11491677	G	A
rs13277113	18204098	83648	FAM167A	umls:C0024141	GAD	[Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.]	0.018740759	2008	NA	8	11491677	G	A
rs13277113	20881011	640	BLK	umls:C0024141	GAD	[The genetic contribution towards predicting early-onset disease in patients with SLE is quantified for the first time. A more severe SLE phenotype is found in patients with early-onset disease in a large multi-racial cohort, independent of gender, race an]	0.272823399	2011	NA	8	11491677	G	A
rs13277113	20131239	83648	FAM167A	umls:C0024141	BeFree	Our findings indicate that the rs13277113A allele is associated not only with SLE but also with SSc and that the FAM167A-BLK region is a common genetic risk factor for both SLE and SSc.	0.018740759	2010	NA	8	11491677	G	A
rs13277113	21765104	10666	CD226	umls:C0024141	BeFree	We replicated the genetic association with rs13277113 (p = 0.0009, OR 1.46) and rs2736340 (p = 0.0001, OR 1.63) from C8orf13-BLK (8p23.1, associated with RA and systemic lupus erythematosus), and rs763361 (p = 0.03) from CD226 (18q22.3, associated with multiple sclerosis and type 1 diabetes) in the Colombian population.	0.006448592	2011	NA	8	11491677	G	A
rs13277113	20131239	640	BLK	umls:C0024141	BeFree	Our findings indicate that the rs13277113A allele is associated not only with SLE but also with SSc and that the FAM167A-BLK region is a common genetic risk factor for both SLE and SSc.	0.272823399	2010	NA	8	11491677	G	A
rs13277113	21765104	83648	FAM167A	umls:C0024141	BeFree	We replicated the genetic association with rs13277113 (p = 0.0009, OR 1.46) and rs2736340 (p = 0.0001, OR 1.63) from C8orf13-BLK (8p23.1, associated with RA and systemic lupus erythematosus), and rs763361 (p = 0.03) from CD226 (18q22.3, associated with multiple sclerosis and type 1 diabetes) in the Colombian population.	0.018740759	2011	NA	8	11491677	G	A
rs13277113	21765104	640	BLK	umls:C0024141	BeFree	We replicated the genetic association with rs13277113 (p = 0.0009, OR 1.46) and rs2736340 (p = 0.0001, OR 1.63) from C8orf13-BLK (8p23.1, associated with RA and systemic lupus erythematosus), and rs763361 (p = 0.03) from CD226 (18q22.3, associated with multiple sclerosis and type 1 diabetes) in the Colombian population.	0.272823399	2011	NA	8	11491677	G	A
rs13385731	20516000	10318	TNIP1	umls:C0024141	BeFree	Significant associations were found for the single nucleotide polymorphism rs10036748 of TNIP1 with photosensitivity (odds ratio (OR) = 0.87, p = 0.01) and vasculitis (OR = 1.18, p = 0.04); rs10847697 of SLC15A4 with discoid rash (OR = 1.18, p = 0.02); rs6590330 of ETS1 with SLE of age at diagnosis <20 years (OR = 1.24, p = 8.91 x 10(-5)); rs13385731 of RasGRP3 with malar rash (OR = 1.20, p = 0.01), discoid rash (OR = 0.78, p = 0.02) and ANA (OR = 0.72, p = 0.004); rs4917014 of IKZF1 with renal nephritis (OR = 1.13, p = 0.02) and malar rash (OR = 0.83, p = 0.00038), respectively.	0.249544073	2010	RASGRP3	2	33476823	T	C
rs13385731	19838193	25780	RASGRP3	umls:C0024141	GAD	[Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.]	0.244734064	2009	RASGRP3	2	33476823	T	C
rs13385731	20516000	121260	SLC15A4	umls:C0024141	BeFree	Significant associations were found for the single nucleotide polymorphism rs10036748 of TNIP1 with photosensitivity (odds ratio (OR) = 0.87, p = 0.01) and vasculitis (OR = 1.18, p = 0.04); rs10847697 of SLC15A4 with discoid rash (OR = 1.18, p = 0.02); rs6590330 of ETS1 with SLE of age at diagnosis <20 years (OR = 1.24, p = 8.91 x 10(-5)); rs13385731 of RasGRP3 with malar rash (OR = 1.20, p = 0.01), discoid rash (OR = 0.78, p = 0.02) and ANA (OR = 0.72, p = 0.004); rs4917014 of IKZF1 with renal nephritis (OR = 1.13, p = 0.02) and malar rash (OR = 0.83, p = 0.00038), respectively.	0.24554839	2010	RASGRP3	2	33476823	T	C
rs13385731	19838193	25780	RASGRP3	umls:C0024141	GWASCAT	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	0.244734064	2009	RASGRP3	2	33476823	T	C
rs1385374	19838193	121260	SLC15A4	umls:C0024141	GWASCAT	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	0.24554839	2009	SLC15A4	12	128816149	C	T
rs1385374	19838193	121260	SLC15A4	umls:C0024141	GAD	[Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.]	0.24554839	2009	SLC15A4	12	128816149	C	T
rs1385374	23273568	121260	SLC15A4	umls:C0024141	GWASCAT	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	0.24554839	2013	SLC15A4	12	128816149	C	T
rs1419183	18204098	7741	ZSCAN26	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.004734064	2008	ZSCAN26	6	28275017	A	C
rs1419183	NA	7741	ZSCAN26	umls:C0024141	GAD	NA	0.004734064	NA	ZSCAN26	6	28275017	A	C
rs148314165	24039598	7124	TNF	umls:C0024141	BeFree	In this report, we evaluate the function of a pair of tandem polymorphic dinucleotides, 42 kb downstream of the promoter of TNFAIP3, (rs148314165, rs200820567, collectively referred to as TT>A) recently nominated as causal variants responsible for genetic association of systemic lupus erythematosus (SLE) with tumor necrosis factor alpha inducible protein 3 (TNFAIP3).	0.12094984	2013	NA	6	137908902	T	-
rs1535001	23740937	23294	ANKS1A	umls:C0024141	GWASCAT	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	0.122367032	2014	ANKS1A	6	34959503	A	G
rs1544410	22004974	7421	VDR	umls:C0024141	BeFree	Three hundred and thirty-seven patients with SLE and 239 healthy controls were genotyped for the VDR gene BsmI polymorphism (rs1544410) by polymerase chain reaction and restriction fragment length polymorphism analysis in this study, after which the relationship between BsmI polymorphisms and the mRNA expression of VDR, as well as clinical manifestations in patients with SLE, was evaluated.	0.018445573	2012	VDR;LOC105369749	12	47846052	C	T
rs1634718	NA	394263	MUC21	umls:C0024141	GAD	NA	0.004734064	NA	MUC22	6	31005088	A	G
rs1635852	23740937	221895	JAZF1	umls:C0024141	GWASCAT	With these, we add three (KIAA0319L, PXK and JAZF1) and one (KIAA0319L) new susceptibility loci for SSc and SLE, respectively, increasing significantly the knowledge of the genetic basis of autoimmunity.	0.242909916	2014	JAZF1	7	28149792	T	C
rs16840639	21637784	10877	CFHR4	umls:C0024141	BeFree	Significant allelic associations with SLE were detected in European Americans (EA) and African Americans (AA), which could be attributed to an intronic CFH SNP (rs6677604, in intron 11, P(meta) = 6.6×10(-8), OR = 1.18) and an intergenic SNP between CFHR1 and CFHR4 (rs16840639, P(meta) = 2.9×10(-7), OR = 1.17) rather than to previously identified disease-associated CFH exonic SNPs, including I62V, Y402H, A474A, and D936E.	0.000271442	2011	NA	1	196855643	T	C
rs16840639	21637784	3078	CFHR1	umls:C0024141	BeFree	Significant allelic associations with SLE were detected in European Americans (EA) and African Americans (AA), which could be attributed to an intronic CFH SNP (rs6677604, in intron 11, P(meta) = 6.6×10(-8), OR = 1.18) and an intergenic SNP between CFHR1 and CFHR4 (rs16840639, P(meta) = 2.9×10(-7), OR = 1.17) rather than to previously identified disease-associated CFH exonic SNPs, including I62V, Y402H, A474A, and D936E.	0.000271442	2011	NA	1	196855643	T	C
rs16891725	18204098	11120	BTN2A1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.004734064	2008	LOC285819	6	26478922	C	T
rs16898264	18204098	3119	HLA-DQB1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.042830529	2008	NA	6	32709375	G	A
rs17039212	19165918	2492	FSHR	umls:C0024141	GAD	[Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.]	0.002367032	2008	NA	2	49728359	C	A
rs17083844	18204098	9306	SOCS6	umls:C0024141	GAD	[Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.]	0.002367032	2008	NA	18	71175007	G	A
rs17250932	22258560	7391	USF1	umls:C0024141	BeFree	The role of upstream stimulatory factor 1 in the transcriptional regulation of the human TBX21 promoter mediated by the T-1514C polymorphism associated with systemic lupus erythematosus.	0.000542884	2012	TBX21	17	47731941	T	C
rs17250932	22258560	30009	TBX21	umls:C0024141	BeFree	The role of upstream stimulatory factor 1 in the transcriptional regulation of the human TBX21 promoter mediated by the T-1514C polymorphism associated with systemic lupus erythematosus.	0.00617715	2012	TBX21	17	47731941	T	C
rs17266594	19180476	55024	BANK1	umls:C0024141	BeFree	To investigate 1 functional (rs17266594) and 2 potentially functional (rs10516487 and rs3733197) BANK1 variants, which were previously identified as systemic lupus erythematosus (SLE) susceptibility markers, to test whether they are associated with rheumatoid arthritis (RA).	0.264646467	2009	BANK1	4	101829765	T	C
rs17266594	21078628	6737	TRIM21	umls:C0024141	BeFree	This study implies that rs10516487 and rs17266594 polymorphisms might contribute to individual susceptibility to SLE and influence the ANA/SSA autoantibody response in SLE patients in Chinese population.	0.022473594	2011	BANK1	4	101829765	T	C
rs17266594	21078628	10950	BTG3	umls:C0024141	BeFree	This study implies that rs10516487 and rs17266594 polymorphisms might contribute to individual susceptibility to SLE and influence the ANA/SSA autoantibody response in SLE patients in Chinese population.	0.001900093	2011	BANK1	4	101829765	T	C
rs17435	20881011	4204	MECP2	umls:C0024141	GAD	[The genetic contribution towards predicting early-onset disease in patients with SLE is quantified for the first time. A more severe SLE phenotype is found in patients with early-onset disease in a large multi-racial cohort, independent of gender, race an]	0.014906897	2011	MECP2	X	154046529	T	A
rs175597	18204098	8341	HIST1H2BN	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.004734064	2008	NA	6	27842848	T	C
rs179008	22065095	51284	TLR7	umls:C0024141	BeFree	We suggest that TLR7 rs179008 and TLR9 rs5743836 can be considered SLE susceptibility factors for women of European descent in our population.	0.097611384	2012	TLR7	X	12885540	A	C,T
rs179008	22065095	54106	TLR9	umls:C0024141	BeFree	We suggest that TLR7 rs179008 and TLR9 rs5743836 can be considered SLE susceptibility factors for women of European descent in our population.	0.02586038	2012	TLR7	X	12885540	A	C,T
rs1794282	18204098	3119	HLA-DQB1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.042830529	2008	NA	6	32698749	C	T
rs1799782	24971336	7515	XRCC1	umls:C0024141	BeFree	XRCC1 Arg399Gln and Arg194Trp polymorphisms and risk of systemic lupus erythematosus in an Iranian population: a pilot study.	0.005819831	2014	XRCC1	19	43553422	G	A
rs1799983	19318399	4846	NOS3	umls:C0024141	BeFree	The presented results in this study do not provide support for a major role of eNOS Glu298Asp neither in the susceptibility for SLE or clinical manifestations, although there was low statistical power for the latter evaluation.	0.013082749	2009	NOS3	7	150999023	T	G
rs1799983	22105628	4846	NOS3	umls:C0024141	BeFree	A meta-analysis was conducted on the associations between the 4b/a, G894T, and C786T polymorphisms of eNOS and SLE and lupus nephritis (LN) (when available) using (1) the allele contrast, (2) the recessive, (3) the dominant, and (4) the additive models.	0.013082749	2012	NOS3	7	150999023	T	G
rs1800450	20881011	4153	MBL2	umls:C0024141	GAD	[The genetic contribution towards predicting early-onset disease in patients with SLE is quantified for the first time. A more severe SLE phenotype is found in patients with early-onset disease in a large multi-racial cohort, independent of gender, race an]	0.073177275	2011	MBL2	10	52771475	C	T
rs1801274	20148910	2209	FCGR1A	umls:C0024141	BeFree	The Fc Gamma Receptor IIa (FcGRIIa) molecule is involved in the clearance of autoantibodies and a functional single nucleotide polymorphism (SNP), rs1801274, which has been shown to alter autoantibody clearance, has been associated with a number of autoimmune diseases (AIDs) including systemic lupus erythematosus and type 1 diabetes.	0.00842463	2010	FCGR2A	1	161509955	A	G
rs1801274	20881011	2212	FCGR2A	umls:C0024141	GAD	[The genetic contribution towards predicting early-onset disease in patients with SLE is quantified for the first time. A more severe SLE phenotype is found in patients with early-onset disease in a large multi-racial cohort, independent of gender, race an]	0.201235993	2011	FCGR2A	1	161509955	A	G
rs1913517	19838193	474354	LRRC18	umls:C0024141	GAD	[Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.]	0.122638474	2009	WDFY4;LRRC18	10	48911009	A	G
rs1913517	19838193	57705	WDFY4	umls:C0024141	GWASCAT	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	0.128186863	2009	WDFY4;LRRC18	10	48911009	A	G
rs1913517	19838193	474354	LRRC18	umls:C0024141	GWASCAT	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	0.122638474	2009	WDFY4;LRRC18	10	48911009	A	G
rs1913517	19838193	57705	WDFY4	umls:C0024141	GAD	[Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.]	0.128186863	2009	WDFY4;LRRC18	10	48911009	A	G
rs1980493	18204098	56244	BTNL2	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.010096888	2008	BTNL2;LOC101929163	6	32395438	T	C
rs1990760	23108955	64135	IFIH1	umls:C0024141	BeFree	Association study of IFIH1 rs1990760 polymorphism with systemic lupus erythematosus in a Chinese population.	0.208262808	2013	IFIH1	2	162267541	C	T
rs1990760	20694011	64135	IFIH1	umls:C0024141	BeFree	In addition to the known association of HLA with IgAD, we identified association with a nonsynonymous variant in IFIH1 (rs1990760G>A, P = 7.3 x 10(-10)) which was previously associated with type 1 diabetes and systemic lupus erythematosus.	0.208262808	2010	IFIH1	2	162267541	C	T
rs1990760	24719229	64135	IFIH1	umls:C0024141	BeFree	Our study supports previous findings of an association between the rs1990760 polymorphism of IFIH1 and SLE and indicates that this SNP may also be associated with malar rash in SLE patients although this finding needs confirmation.	0.208262808	2014	IFIH1	2	162267541	C	T
rs200215055	14651519	2215	FCGR3B	umls:C0024141	BeFree	FCGR2A-H131R, FCGR2B-I232T, FCGR3A-F176V, and FCGR3B genotypes were determined in 167 Chinese patients with SLE and 129 healthy controls.	0.034252672	2004	FCGR3B	1	161626196	C	A,G
rs2004640	19043711	3663	IRF5	umls:C0024141	BeFree	Association between the rs2004640 functional polymorphism of interferon regulatory factor 5 and systemic lupus erythematosus: a meta-analysis.	0.234583243	2009	IRF5	7	128938247	T	G
rs2004640	19043711	3663	IRF5	umls:C0024141	GAD	[Association between the rs2004640 functional polymorphism of interferon regulatory factor 5 and systemic lupus erythematosus: a meta-analysis.]	0.234583243	2009	IRF5	7	128938247	T	G
rs2004640	21239750	3663	IRF5	umls:C0024141	BeFree	The IRF5 haplotype (rs729302 A, rs2004640 T, and rs2280714 T), which was reported as conferring an increased risk of SLE, was significantly associated with MAS susceptibility in patients with systemic JIA (OR 4.61; 95% CI 1.73, 12.3; p < 0.001).	0.234583243	2011	IRF5	7	128938247	T	G
rs2004640	17133578	3663	IRF5	umls:C0024141	BeFree	Two genetic variants of the IRF5 gene (rs2004640 in exon 1 and rs2280714 in the 3'-untranslated region) have been shown to exert functional modifications affecting IRF5 messenger RNA splicing and expression, and have been associated with genetic predisposition to systemic lupus erythematosus (SLE).	0.234583243	2006	IRF5	7	128938247	T	G
rs200820567	24039598	7124	TNF	umls:C0024141	BeFree	In this report, we evaluate the function of a pair of tandem polymorphic dinucleotides, 42 kb downstream of the promoter of TNFAIP3, (rs148314165, rs200820567, collectively referred to as TT>A) recently nominated as causal variants responsible for genetic association of systemic lupus erythematosus (SLE) with tumor necrosis factor alpha inducible protein 3 (TNFAIP3).	0.12094984	2013	NA	6	137908903	T	A
rs200953	18204098	3009	HIST1H1B	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.002367032	2008	HIST1H1B	6	27869489	T	C
rs204991	18204098	63940	GPSM3	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.004734064	2008	GPSM3	6	32193589	T	C
rs2051549	23053960	3120	HLA-DQB2	umls:C0024141	GWASCAT	Genome-wide pathway analysis of genome-wide association studies on systemic lupus erythematosus and rheumatoid arthritis.	0.125081451	2012	HLA-DQB2	6	32762309	G	A
rs20563	23039241	284217	LAMA1	umls:C0024141	BeFree	To evaluate the association between LAMA1 (rs543355) and LAMC1 (rs20563) polymorphisms and the presence of SLE and PE as well as to determine serum levels of anti-LM-111 autoantibodies in the PE group.	0.000271442	2013	LAMC1	1	183116620	A	G
rs206015	NA	4855	NOTCH4	umls:C0024141	GAD	NA	0.00973957	NA	NOTCH4	6	32214982	G	A
rs2070197	21952918	3663	IRF5	umls:C0024141	BeFree	Importantly, our data suggest that in patients with lupus, the presence of the HLA lupus risk alleles in rs1270942 and rs3131379 increases the odds of also carrying the lupus risk allele in IRF5 (rs2070197) by 17% and 16%, respectively (P = 0.0028 and P = 0.0047, respectively).	0.234583243	2012	IRF5	7	128948946	T	C
rs2075596	23857988	4204	MECP2	umls:C0024141	BeFree	Association of MeCP2 (rs2075596, rs2239464) genetic polymorphisms with systemic lupus erythematosus: a meta-analysis.	0.014906897	2014	MECP2	X	154031941	A	G
rs2076530	16690410	3119	HLA-DQB1	umls:C0024141	BeFree	The BTNL2 rs2076530 polymorphism is associated with T1D, RA, and SLE because of its strong linkage disequalibrium with predisposing HLA DQB1-DRB1 haplotypes in Caucasian populations.	0.042830529	2005	BTNL2;LOC101929163	6	32396039	T	C
rs2176082	23740937	54899	PXK	umls:C0024141	GWASCAT	With these, we add three (KIAA0319L, PXK and JAZF1) and one (KIAA0319L) new susceptibility loci for SSc and SLE, respectively, increasing significantly the knowledge of the genetic basis of autoimmunity.	0.256188161	2014	PXK	3	58345459	G	A
rs2187668	21408207	3117	HLA-DQA1	umls:C0024141	GWASCAT	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	0.257926433	2011	HLA-DQA1	6	32638107	C	T
rs2187668	18204098	3117	HLA-DQA1	umls:C0024141	GWASCAT	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	0.257926433	2008	HLA-DQA1	6	32638107	C	T
rs2187668	18204098	3117	HLA-DQA1	umls:C0024141	GAD	[Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.]	0.257926433	2008	HLA-DQA1	6	32638107	C	T
rs2205960	20881011	7292	TNFSF4	umls:C0024141	GAD	[The genetic contribution towards predicting early-onset disease in patients with SLE is quantified for the first time. A more severe SLE phenotype is found in patients with early-onset disease in a large multi-racial cohort, independent of gender, race an]	0.14801339	2011	NA	1	173222336	G	A,T
rs2205960	19838193	7292	TNFSF4	umls:C0024141	GAD	[Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.]	0.14801339	2009	NA	1	173222336	G	A,T
rs2205960	21905002	7128	TNFAIP3	umls:C0024141	BeFree	Single-marker analysis validated the association of BLK rs2736340 (P=4.25×10(-6)) as well as TNFSF4 rs2205960 (P=2.82×10(-5)) and TNFAIP3 rs5029939 (P=1.92×10(-3)) with SLE susceptibility in Chinese.	0.268175211	2012	NA	1	173222336	G	A,T
rs2230926	20617138	391191	OR2AK2	umls:C0024141	BeFree	Association of rs2230926 G allele with SLE was replicated in Japanese (allelic association P = .033, odds ratio [OR] 1.47, recessive model P = .023, OR 8.52).	0.000271442	2010	TNFAIP3	6	137874929	T	C,G
rs2230926	23911423	7128	TNFAIP3	umls:C0024141	BeFree	Associations of TNFAIP3 rs2230926 (p=1.43 × 10(-3)) and TNIP1 rs10036748 (p=4.33 × 10(-3)) with SLE were replicated in our study.	0.268175211	2013	TNFAIP3	6	137874929	T	C,G
rs2230926	19838193	7128	TNFAIP3	umls:C0024141	GWASCAT	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	0.268175211	2009	TNFAIP3	6	137874929	T	C,G
rs2230926	19838193	7128	TNFAIP3	umls:C0024141	GAD	[Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.]	0.268175211	2009	TNFAIP3	6	137874929	T	C,G
rs2230926	20483768	7128	TNFAIP3	umls:C0024141	BeFree	There are two nonsynonymous coding polymorphisms in the deubiquitinating (DUB) domain of TNFAIP3: F127C, which is in high-linkage disequilibrium with reported SLE-risk variants, and A125V, which has not been previously studied.	0.268175211	2010	TNFAIP3	6	137874929	T	C,G
rs2230926	23273568	7128	TNFAIP3	umls:C0024141	GWASCAT	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	0.268175211	2013	TNFAIP3	6	137874929	T	C,G
rs2233956	18204098	29113	C6orf15	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.004734064	2008	C6orf15;PSORS1C1	6	31113428	T	C
rs2233956	18204098	170679	PSORS1C1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.004734064	2008	C6orf15;PSORS1C1	6	31113428	T	C
rs2239464	23857988	4204	MECP2	umls:C0024141	BeFree	Association of MeCP2 (rs2075596, rs2239464) genetic polymorphisms with systemic lupus erythematosus: a meta-analysis.	0.014906897	2014	MECP2	X	154082978	G	A
rs2239804	NA	3122	HLA-DRA	umls:C0024141	GAD	NA	0.010011012	NA	HLA-DRA	6	32443746	T	C
rs2243188	24819332	29949	IL19	umls:C0024141	BeFree	Association study of interleukin-19 rs2243188 polymorphism with systemic lupus erythematosus in a Chinese population.	0.000542884	2015	IL19;LOC105372878	1	206841127	A	C
rs2243250	24628947	3565	IL4	umls:C0024141	BeFree	However, we failed to reveal any association between IL-4 rs2243250 polymorphism and systemic lupus erythematosus (SLE), type 1 diabetes (T1D) or Graves' disease (GD).	0.13953134	2014	IL4	5	132673462	C	T
rs2246614	21167895	6737	TRIM21	umls:C0024141	BeFree	Additionally, rs4963128 and rs2246614 were correlated with a variety of clinical subphenotypes, such as lupus nephritis, arthritis, and the production of anti-SSA/B autoantibodies, despite a lack of significant association between these two SNPs and SLE disease susceptibility in general.	0.022473594	2011	CDHR5	11	619789	T	G
rs2246618	23084292	4855	NOTCH4	umls:C0024141	BeFree	Our results from conditional analysis and model choice with the use of the Bayesian information criterion show that the best model for SLE association includes both classical loci (HLA-DRB1(∗)03:01, HLA-DRB1(∗)08:01, and HLA-DQA1(∗)01:02) and two SNPs, rs8192591 (in class III and upstream of NOTCH4) and rs2246618 (MICB in class I).	0.00973957	2012	MICB	6	31511209	C	T
rs2246618	23084292	4277	MICB	umls:C0024141	BeFree	Our results from conditional analysis and model choice with the use of the Bayesian information criterion show that the best model for SLE association includes both classical loci (HLA-DRB1(∗)03:01, HLA-DRB1(∗)08:01, and HLA-DQA1(∗)01:02) and two SNPs, rs8192591 (in class III and upstream of NOTCH4) and rs2246618 (MICB in class I).	0.005005506	2012	MICB	6	31511209	C	T
rs2246618	23084292	3118	HLA-DQA2	umls:C0024141	BeFree	Our results from conditional analysis and model choice with the use of the Bayesian information criterion show that the best model for SLE association includes both classical loci (HLA-DRB1(∗)03:01, HLA-DRB1(∗)08:01, and HLA-DQA1(∗)01:02) and two SNPs, rs8192591 (in class III and upstream of NOTCH4) and rs2246618 (MICB in class I).	0.003995683	2012	MICB	6	31511209	C	T
rs2255336	21598106	22914	KLRK1	umls:C0024141	BeFree	Prevalence of the NKG2D Thr72Ala polymorphism in patients with systemic lupus erythematosus.	0.002909916	2012	KLRK1;KLRC4-KLRK1;LOC101928100	12	10379727	T	C
rs2275247	23740937	79932	KIAA0319L	umls:C0024141	GWASCAT	With these, we add three (KIAA0319L, PXK and JAZF1) and one (KIAA0319L) new susceptibility loci for SSc and SLE, respectively, increasing significantly the knowledge of the genetic basis of autoimmunity.	0.120271442	2014	KIAA0319L	1	35442850	T	C
rs2280714	21239750	3663	IRF5	umls:C0024141	BeFree	The IRF5 haplotype (rs729302 A, rs2004640 T, and rs2280714 T), which was reported as conferring an increased risk of SLE, was significantly associated with MAS susceptibility in patients with systemic JIA (OR 4.61; 95% CI 1.73, 12.3; p < 0.001).	0.234583243	2011	TNPO3	7	128954671	C	T
rs2280714	17133578	3663	IRF5	umls:C0024141	BeFree	Two genetic variants of the IRF5 gene (rs2004640 in exon 1 and rs2280714 in the 3'-untranslated region) have been shown to exert functional modifications affecting IRF5 messenger RNA splicing and expression, and have been associated with genetic predisposition to systemic lupus erythematosus (SLE).	0.234583243	2006	TNPO3	7	128954671	C	T
rs2301271	21408207	3120	HLA-DQB2	umls:C0024141	GWASCAT	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	0.125081451	2011	HLA-DQB2	6	32757416	A	G
rs2303745	23273568	79016	DDA1	umls:C0024141	GWASCAT	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	0.12	2013	DDA1	19	17309480	G	T
rs2304256	19966805	7297	TYK2	umls:C0024141	BeFree	The highest association was at marker rs2304256 (odds ratio (OR) = 0.86; 95%CI = 0.82-0.90) in the TYK2 gene, which has previously been associated with systemic lupus erythematosus and multiple sclerosis.	0.012268423	2010	TYK2	19	10364976	C	A
rs2313132	19165918	54510	PCDH18	umls:C0024141	GAD	[Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.]	0.002367032	2008	NA	4	137771096	G	A
rs231775	20881011	1493	CTLA4	umls:C0024141	GAD	[The genetic contribution towards predicting early-onset disease in patients with SLE is quantified for the first time. A more severe SLE phenotype is found in patients with early-onset disease in a large multi-racial cohort, independent of gender, race an]	0.067790707	2011	CTLA4	2	203867991	A	G,T
rs2395162	18204098	56244	BTNL2	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.010096888	2008	NA	6	32420003	G	T
rs2395488	NA	352961	HCG26	umls:C0024141	GAD	NA	0.004734064	NA	NA	6	31478132	A	G
rs241453	19387463	266629	SEC14L3	umls:C0024141	BeFree	We found significant evidence of association between TAP2 and SLE (rs241453, P=1.33 x 10(-6)).	0.001900093	2009	TAP2	6	32828449	G	A
rs2431697	21408207	9232	PTTG1	umls:C0024141	GAD	[Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.]	0.002638474	2011	NA	5	160452971	T	C
rs2431697	22218224	406938	MIR146A	umls:C0024141	BeFree	A recent genome-wide association study revealed a variant (rs2431697) in an intergenic region, between the pituitary tumor-transforming 1 (PTTG1) and microRNA (miR-146a) genes, associated with systemic lupus erythematosus (SLE) susceptibility.	0.003528744	2012	NA	5	160452971	T	C
rs2431697	22218224	9232	PTTG1	umls:C0024141	BeFree	A recent genome-wide association study revealed a variant (rs2431697) in an intergenic region, between the pituitary tumor-transforming 1 (PTTG1) and microRNA (miR-146a) genes, associated with systemic lupus erythematosus (SLE) susceptibility.	0.002638474	2012	NA	5	160452971	T	C
rs2476601	21078766	52	ACP1	umls:C0024141	BeFree	The aim of this study was to determine whether the functional protein tyrosine phosphatase nonreceptor 22 (PTPN22) C1858T polymorphism (rs2476601) confers susceptibility to systemic lupus erythematosus (SLE) in ethnically different populations.	0.006710102	2011	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	23359562	52	ACP1	umls:C0024141	BeFree	The protein tyrosine phosphatase LYP, a key regulator of TCR signaling, presents a single nucleotide polymorphism, C1858T, associated with several autoimmune diseases such as type I diabetes, rheumatoid arthritis, and lupus.	0.006710102	2013	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	16052563	26191	PTPN22	umls:C0024141	BeFree	Association analysis of the R620W polymorphism of protein tyrosine phosphatase PTPN22 in systemic lupus erythematosus families: increased T allele frequency in systemic lupus erythematosus patients with autoimmune thyroid disease.	0.276414275	2005	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	17092257	26191	PTPN22	umls:C0024141	BeFree	Multiplex family-based study in systemic lupus erythematosus: association between the R620W polymorphism of PTPN22 and the FcgammaRIIa (CD32A) R131 allele.	0.276414275	2006	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	26018863	26191	PTPN22	umls:C0024141	BeFree	PTPN22 Variant R620W Is Associated With Reduced Toll-like Receptor 7-Induced Type I Interferon in Systemic Lupus Erythematosus.	0.276414275	2015	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	23314521	52	ACP1	umls:C0024141	BeFree	R620W polymorphism of protein tyrosine phosphatase PTPN22 in Egyptian children and adolescents with systemic lupus erythematosus: relation to thyroid autoimmunity.	0.006710102	2013	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	18759295	7124	TNF	umls:C0024141	BeFree	The PTPN22 C1858T polymorphism is associated with skewing of cytokine profiles toward high interferon-alpha activity and low tumor necrosis factor alpha levels in patients with lupus.	0.12094984	2008	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	15004560	26191	PTPN22	umls:C0024141	UNIPROT	A functional variant of lymphoid tyrosine phosphatase is associated with type I diabetes.	0.276414275	2004	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	20881011	26191	PTPN22	umls:C0024141	GAD	[The genetic contribution towards predicting early-onset disease in patients with SLE is quantified for the first time. A more severe SLE phenotype is found in patients with early-onset disease in a large multi-racial cohort, independent of gender, race an]	0.276414275	2011	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	15273934	26191	PTPN22	umls:C0024141	BeFree	Genetic association of the R620W polymorphism of protein tyrosine phosphatase PTPN22 with human SLE.	0.276414275	2004	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	21543514	26191	PTPN22	umls:C0024141	BeFree	Association of the PTPN22 R620W polymorphism with increased risk for SLE in the genetically homogeneous population of Crete.	0.276414275	2011	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	17092257	2212	FCGR2A	umls:C0024141	BeFree	Multiplex family-based study in systemic lupus erythematosus: association between the R620W polymorphism of PTPN22 and the FcgammaRIIa (CD32A) R131 allele.	0.201235993	2006	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	15273934	52	ACP1	umls:C0024141	BeFree	Genetic association of the R620W polymorphism of protein tyrosine phosphatase PTPN22 with human SLE.	0.006710102	2004	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	21078766	26191	PTPN22	umls:C0024141	BeFree	The association between the PTPN22 C1858T polymorphism and systemic lupus erythematosus: a meta-analysis update.	0.276414275	2011	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	18194365	26191	PTPN22	umls:C0024141	BeFree	The functional (R620W) variant of human PTPN22 (protein tyrosine phosphatase non-receptor 22) gene has been implicated in the risk to several autoimmune disorders, including type 1 diabetes, Graves' disease, rheumatoid arthritis and systemic lupus erythematosus.	0.276414275	2008	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	26018863	51284	TLR7	umls:C0024141	BeFree	PTPN22 Variant R620W Is Associated With Reduced Toll-like Receptor 7-Induced Type I Interferon in Systemic Lupus Erythematosus.	0.097611384	2015	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	23314521	26191	PTPN22	umls:C0024141	BeFree	R620W polymorphism of protein tyrosine phosphatase PTPN22 in Egyptian children and adolescents with systemic lupus erythematosus: relation to thyroid autoimmunity.	0.276414275	2013	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	18194365	52	ACP1	umls:C0024141	BeFree	The functional (R620W) variant of human PTPN22 (protein tyrosine phosphatase non-receptor 22) gene has been implicated in the risk to several autoimmune disorders, including type 1 diabetes, Graves' disease, rheumatoid arthritis and systemic lupus erythematosus.	0.006710102	2008	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	16052172	5551	PRF1	umls:C0024141	BeFree	It was reported that a missense single nucleotide polymorphism , R620W (rs2476601), 1858C->T encodes an amino-acid change in the P1 proline-rich motif of the gene PTPN22 and is associated with SLE in North American white individuals.	0.003257302	2005	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	16052172	26191	PTPN22	umls:C0024141	BeFree	The R620W C/T polymorphism of the gene PTPN22 is associated with SLE independently of the association of PDCD1.	0.276414275	2005	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	16052172	5133	PDCD1	umls:C0024141	BeFree	The R620W C/T polymorphism of the gene PTPN22 is associated with SLE independently of the association of PDCD1.	0.180080714	2005	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	21384170	26191	PTPN22	umls:C0024141	BeFree	No association of PTPN22 R620W gene polymorphism with rheumatic heart disease and systemic lupus erythematosus.	0.276414275	2011	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	15934099	26191	PTPN22	umls:C0024141	GAD	[ We replicated the findings of a previous association with RA and identified a novel association with JIA. Together with previous data showing associations with other autoimmune diseases, our findings provide further evidence that the PTPN22 gene plays a ]	0.276414275	2005	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	23359562	26191	PTPN22	umls:C0024141	BeFree	The protein tyrosine phosphatase LYP, a key regulator of TCR signaling, presents a single nucleotide polymorphism, C1858T, associated with several autoimmune diseases such as type I diabetes, rheumatoid arthritis, and lupus.	0.276414275	2013	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	16868974	26191	PTPN22	umls:C0024141	BeFree	Evaluation of the genetic association of the PTPN22 R620W polymorphism in familial and sporadic systemic lupus erythematosus.	0.276414275	2006	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	18759295	26191	PTPN22	umls:C0024141	BeFree	The PTPN22 C1858T polymorphism is associated with skewing of cytokine profiles toward high interferon-alpha activity and low tumor necrosis factor alpha levels in patients with lupus.	0.276414275	2008	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2476601	22704547	26191	PTPN22	umls:C0024141	BeFree	The PTPN22 C1858T variant as a risk factor for rheumatoid arthritis and systemic lupus erythematosus but not for systemic sclerosis in the Colombian population.	0.276414275	2012	PTPN22;AP4B1-AS1	1	113834946	A	G
rs2517403	NA	285834	HCG22	umls:C0024141	GAD	NA	0.007101096	NA	NA	6	31099232	T	C
rs25487	24971336	7515	XRCC1	umls:C0024141	BeFree	XRCC1 Arg399Gln and Arg194Trp polymorphisms and risk of systemic lupus erythematosus in an Iranian population: a pilot study.	0.005819831	2014	XRCC1	19	43551574	T	C
rs25487	21682595	7515	XRCC1	umls:C0024141	BeFree	XRCC1 Arg399Gln gene polymorphism and the risk of systemic lupus erythematosus in the Polish population.	0.005819831	2012	XRCC1	19	43551574	T	C
rs25487	18852222	7515	XRCC1	umls:C0024141	BeFree	In the present study, we aimed to investigate: (a) the efficiency of SLE peripheral blood leucocytes in repairing DNA damage induced by ionizing radiation and (b) the association of DNA repair gene (XRCC1 Arg399Gln, XRCC3 Thr241Met and XRCC4 Ile401Thr) polymorphisms in SLE patients, considering the whole group, or stratified sub-groups according to clinical and laboratory features.	0.005819831	2008	XRCC1	19	43551574	T	C
rs25487	18852222	7515	XRCC1	umls:C0024141	GAD	[Efficiency of the DNA repair and polymorphisms of the XRCC1, XRCC3 and XRCC4 DNA repair genes in systemic lupus erythematosus.]	0.005819831	2008	XRCC1	19	43551574	T	C
rs2618476	19165918	640	BLK	umls:C0024141	GWASCAT	Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.	0.272823399	2008	BLK	8	11495032	T	C
rs2647012	18204098	3119	HLA-DQB1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.042830529	2008	NA	6	32696681	T	C
rs2647012	21408207	3119	HLA-DQB1	umls:C0024141	GAD	[Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.]	0.042830529	2011	NA	6	32696681	T	C
rs2647050	18204098	3119	HLA-DQB1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.042830529	2008	NA	6	32701990	T	C
rs2670660	22235789	22861	NLRP1	umls:C0024141	BeFree	Our results demonstrated that NLRP1 rs2670660 SNP and the NLRP1 rs12150220-rs2670660 A-G haplotype were associated with SLE in our study population, and in particular with the development of nephritis, rash and arthritis.	0.000542884	2012	NA	17	5615686	A	G
rs2736340	21765104	83648	FAM167A	umls:C0024141	BeFree	We replicated the genetic association with rs13277113 (p = 0.0009, OR 1.46) and rs2736340 (p = 0.0001, OR 1.63) from C8orf13-BLK (8p23.1, associated with RA and systemic lupus erythematosus), and rs763361 (p = 0.03) from CD226 (18q22.3, associated with multiple sclerosis and type 1 diabetes) in the Colombian population.	0.018740759	2011	NA	8	11486464	C	T
rs2736340	21765104	640	BLK	umls:C0024141	BeFree	We replicated the genetic association with rs13277113 (p = 0.0009, OR 1.46) and rs2736340 (p = 0.0001, OR 1.63) from C8orf13-BLK (8p23.1, associated with RA and systemic lupus erythematosus), and rs763361 (p = 0.03) from CD226 (18q22.3, associated with multiple sclerosis and type 1 diabetes) in the Colombian population.	0.272823399	2011	NA	8	11486464	C	T
rs2736340	21765104	10666	CD226	umls:C0024141	BeFree	We replicated the genetic association with rs13277113 (p = 0.0009, OR 1.46) and rs2736340 (p = 0.0001, OR 1.63) from C8orf13-BLK (8p23.1, associated with RA and systemic lupus erythematosus), and rs763361 (p = 0.03) from CD226 (18q22.3, associated with multiple sclerosis and type 1 diabetes) in the Colombian population.	0.006448592	2011	NA	8	11486464	C	T
rs2736340	21408207	83648	FAM167A	umls:C0024141	GAD	[Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.]	0.018740759	2011	NA	8	11486464	C	T
rs2736340	21905002	7128	TNFAIP3	umls:C0024141	BeFree	Single-marker analysis validated the association of BLK rs2736340 (P=4.25×10(-6)) as well as TNFSF4 rs2205960 (P=2.82×10(-5)) and TNFAIP3 rs5029939 (P=1.92×10(-3)) with SLE susceptibility in Chinese.	0.268175211	2012	NA	8	11486464	C	T
rs2763979	NA	3304	HSPA1B	umls:C0024141	GAD	NA	0.008458305	NA	HSPA1B	6	31826815	C	T
rs2834167	23749100	3588	IL10RB	umls:C0024141	BeFree	IL-10RB rs2834167 (A/G) polymorphism is associated with the susceptibility to systemic lupus erythematosus: evidence from a study in Chinese Han population.	0.000542884	2014	IL10RB	21	33268483	A	G
rs2844635	NA	285834	HCG22	umls:C0024141	GAD	NA	0.007101096	NA	NA	6	31107704	A	G
rs2844659	18204098	8870	IER3	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.007372538	2008	NA	6	30856755	C	T
rs2844773	NA	7726	TRIM26	umls:C0024141	GAD	NA	0.004734064	NA	NA	6	30239718	C	A
rs2856717	18204098	3119	HLA-DQB1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.042830529	2008	NA	6	32702531	A	G
rs2856718	18204098	3119	HLA-DQB1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.042830529	2008	NA	6	32702478	C	T
rs2856725	18204098	3119	HLA-DQB1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.042830529	2008	NA	6	32698961	C	T
rs2857595	18204098	259197	NCR3	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.007101096	2008	NA	6	31600692	G	A
rs2857595	NA	259197	NCR3	umls:C0024141	GAD	NA	0.007101096	NA	NA	6	31600692	G	A
rs2858305	18204098	3119	HLA-DQB1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.042830529	2008	NA	6	32702687	G	T
rs2858331	18204098	3119	HLA-DQB1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.042830529	2008	NA	6	32713500	A	G
rs3027898	23435933	3654	IRAK1	umls:C0024141	BeFree	Association of interleukin-1 receptor-associated kinase (IRAK1) gene polymorphisms (rs3027898, rs1059702) with systemic lupus erythematosus in a Chinese Han population.	0.011454097	2013	IRAK1	X	154010439	C	A
rs3093030	22523428	3684	ITGAM	umls:C0024141	BeFree	The A-allele of ICAM1-ICAM4-ICAM5 rs3093030, associated with elevated plasma levels of soluble ICAM1, and the A-allele of ITGAM rs1143679 showed the strongest association with increased SLE susceptibility in each of the ancestry populations and the trans-ancestry meta-analysis (OR(meta)=1.16, 95% CI 1.11 to 1.22; p=4.88×10(-10) and OR(meta)=1.67, 95% CI 1.55 to 1.79; p=3.32×10(-46), respectively).	0.278729106	2012	ICAM1;ICAM4	19	10286727	C	T
rs3095089	NA	135656	DPCR1	umls:C0024141	GAD	NA	0.007101096	NA	NA	6	30966017	G	T
rs3099844	NA	352961	HCG26	umls:C0024141	GAD	NA	0.004734064	NA	LOC102725068	6	31481199	C	A
rs3099844	18204098	352961	HCG26	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.004734064	2008	LOC102725068	6	31481199	C	A
rs3099844	25369137	10866	HCP5	umls:C0024141	BeFree	HCP5 rs3099844 is associated with SLE and with anti-Ro/SSA.	0.002638474	2014	LOC102725068	6	31481199	C	A
rs3099844	25369137	6737	TRIM21	umls:C0024141	BeFree	HCP5 rs3099844 is associated with SLE and with anti-Ro/SSA.	0.022473594	2014	LOC102725068	6	31481199	C	A
rs3129890	18204098	3122	HLA-DRA	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.010011012	2008	NA	6	32446496	T	C
rs3129962	18204098	56244	BTNL2	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.010096888	2008	NA	6	32411606	G	A,C
rs3129963	18204098	56244	BTNL2	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.010096888	2008	NA	6	32412431	A	G
rs3129963	NA	56244	BTNL2	umls:C0024141	GAD	NA	0.010096888	NA	NA	6	32412431	A	G
rs3129975	NA	8870	IER3	umls:C0024141	GAD	NA	0.007372538	NA	HCG20	6	30764277	T	C
rs3130320	21408207	4855	NOTCH4	umls:C0024141	GAD	[Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.]	0.00973957	2011	LOC101929163	6	32255481	T	C
rs3130342	18058064	3123	HLA-DRB1	umls:C0024141	BeFree	Stratified analysis also revealed that the association of SNP rs3130342 with SLE was independent of the HLA-DRB1*1501 allele that has been shown to be associated with SLE.	0.235879985	2008	NA	6	32112369	A	C
rs3130380	18204098	414777	HCG18	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.002367032	2008	HCG18;HCG17	6	30311353	G	A
rs3130544	18204098	285834	HCG22	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.007101096	2008	NA	6	31090563	C	A
rs3130544	NA	285834	HCG22	umls:C0024141	GAD	NA	0.007101096	NA	NA	6	31090563	C	A
rs3130618	18204098	1460	CSNK2B	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.004734064	2008	CSNK2B;GPANK1	6	31664357	C	A
rs3130893	NA	282890	ZNF311	umls:C0024141	GAD	NA	0.004734064	NA	NA	6	29012930	A	G
rs3131296	18204098	4855	NOTCH4	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.00973957	2008	NOTCH4	6	32205216	C	T
rs3131296	NA	4855	NOTCH4	umls:C0024141	GAD	NA	0.00973957	NA	NOTCH4	6	32205216	C	T
rs3131379	NA	4439	MSH5	umls:C0024141	GAD	NA	0.130011012	NA	MSH5;MSH5-SAPCD1	6	31753256	G	A
rs3131379	18204446	100532732	MSH5-SAPCD1	umls:C0024141	GWASCAT	Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.	0.12	2008	MSH5;MSH5-SAPCD1	6	31753256	G	A
rs3131379	18204446	4439	MSH5	umls:C0024141	GWASCAT	Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.	0.130011012	2008	MSH5;MSH5-SAPCD1	6	31753256	G	A
rs3131379	18204446	4439	MSH5	umls:C0024141	GAD	[Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.]	0.130011012	2008	MSH5;MSH5-SAPCD1	6	31753256	G	A
rs3131379	25882064	3447	IFNA13	umls:C0024141	BeFree	Using a list of 11 single nucleotide polymorphisms from the results of genome-wide association studies for systemic lupus erythematosus, which we hypothesised would be enriched in variants that regulate type-I IFN production, we identified a genetic risk score based on 3 single nucleotide polymorphisms (rs10516487, rs3131379 and rs7574865), which correlated significantly with production of IFN-α by human peripheral leukocytes stimulated with CpG-oligonucleotide (n=60, P=1.50 × 10(-5)).	0.022801117	2015	MSH5;MSH5-SAPCD1	6	31753256	G	A
rs3131379	21952918	3663	IRF5	umls:C0024141	BeFree	Importantly, our data suggest that in patients with lupus, the presence of the HLA lupus risk alleles in rs1270942 and rs3131379 increases the odds of also carrying the lupus risk allele in IRF5 (rs2070197) by 17% and 16%, respectively (P = 0.0028 and P = 0.0047, respectively).	0.234583243	2012	MSH5;MSH5-SAPCD1	6	31753256	G	A
rs3132580	18204098	135656	DPCR1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.007101096	2008	DPCR1;LOC102723346	6	30952347	G	A
rs3132580	NA	135656	DPCR1	umls:C0024141	GAD	NA	0.007101096	NA	DPCR1;LOC102723346	6	30952347	G	A
rs3132610	18204098	23	ABCF1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.004734064	2008	ABCF1	6	30576624	A	G
rs3132685	NA	10255	HCG9	umls:C0024141	GAD	NA	0.004734064	NA	HCG9	6	29978172	G	T,A
rs3134942	NA	4855	NOTCH4	umls:C0024141	GAD	NA	0.00973957	NA	NOTCH4	6	32200994	G	T
rs3135353	18204098	56244	BTNL2	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.010096888	2008	NA	6	32425100	C	T
rs3135353	NA	56244	BTNL2	umls:C0024141	GAD	NA	0.010096888	NA	NA	6	32425100	C	T
rs315952	23722873	3557	IL1RN	umls:C0024141	BeFree	Polymorphism in IL-1RN rs315952 was significantly associated with SLE in Iranian patients, rs315952CT genotype being a protective factor.	0.021355488	2013	IL1RN	2	113132727	T	A,C
rs33996649	21279993	26191	PTPN22	umls:C0024141	BeFree	Recently, a functional PTPN22 variant (R263Q; rs33996649) was found to be associated with systemic lupus erythematosus (SLE).	0.276414275	2011	PTPN22;AP4B1-AS1	1	113852067	C	T
rs340630	22291604	4299	AFF1	umls:C0024141	GWASCAT	A genome-wide association study identified AFF1 as a susceptibility locus for systemic lupus eyrthematosus in Japanese.	0.122909916	2012	AFF1	4	87037243	G	A
rs340630	22983539	4299	AFF1	umls:C0024141	BeFree	Association of AFF1 rs340630 and AFF3 rs10865035 polymorphisms with systemic lupus erythematosus in a Chinese population.	0.122909916	2012	AFF1	4	87037243	G	A
rs340630	22291604	4299	AFF1	umls:C0024141	GAD	[A genome-wide association study identified AFF1 as a susceptibility locus for systemic lupus eyrthematosus in Japanese.]	0.122909916	2012	AFF1	4	87037243	G	A
rs34330	23273568	1027	CDKN1B	umls:C0024141	GWASCAT	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	0.12	2013	CDKN1B;GPR19	12	12717761	T	C
rs362521	19851445	1388	ATF6B	umls:C0024141	BeFree	Sequential removal of SLE-associated DRB1 haplotypes revealed independent effects due to variation within OR2H2 (extended class I, rs362521, p = 0.006), CREBL1 (class III, rs8283, p = 0.01), and DQB2 (class II, rs7769979, p = 0.003, and rs10947345, p = 0.0004).	0.002638474	2009	OR2H2	6	29588982	C	T
rs362521	19851445	7932	OR2H2	umls:C0024141	BeFree	Sequential removal of SLE-associated DRB1 haplotypes revealed independent effects due to variation within OR2H2 (extended class I, rs362521, p = 0.006), CREBL1 (class III, rs8283, p = 0.01), and DQB2 (class II, rs7769979, p = 0.003, and rs10947345, p = 0.0004).	0.002638474	2009	OR2H2	6	29588982	C	T
rs362521	19851445	129831	RBM45	umls:C0024141	BeFree	Sequential removal of SLE-associated DRB1 haplotypes revealed independent effects due to variation within OR2H2 (extended class I, rs362521, p = 0.006), CREBL1 (class III, rs8283, p = 0.01), and DQB2 (class II, rs7769979, p = 0.003, and rs10947345, p = 0.0004).	0.010043349	2009	OR2H2	6	29588982	C	T
rs3733197	19180476	55024	BANK1	umls:C0024141	BeFree	To investigate 1 functional (rs17266594) and 2 potentially functional (rs10516487 and rs3733197) BANK1 variants, which were previously identified as systemic lupus erythematosus (SLE) susceptibility markers, to test whether they are associated with rheumatoid arthritis (RA).	0.264646467	2009	BANK1	4	101918130	G	A
rs3734266	23273568	54887	UHRF1BP1	umls:C0024141	GWASCAT	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	0.242909916	2013	UHRF1BP1	6	34855410	T	C
rs3749971	18204098	81797	OR12D3	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.004734064	2008	OR5V1;OR12D3	6	29374998	G	A
rs3764880	24445780	51311	TLR8	umls:C0024141	BeFree	The G-G haplotype of TLR7 rs3853839 and TLR8 rs3764880 increased risk of SLE in females (age adjusted p = 0.0032).	0.001357209	2013	TLR8;TLR8-AS1	X	12906707	A	G
rs3764880	24445780	51284	TLR7	umls:C0024141	BeFree	The G-G haplotype of TLR7 rs3853839 and TLR8 rs3764880 increased risk of SLE in females (age adjusted p = 0.0032).	0.097611384	2013	TLR8;TLR8-AS1	X	12906707	A	G
rs377763	18204098	4855	NOTCH4	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.00973957	2008	NA	6	32231367	C	A
rs3803800	21984075	8741	TNFSF13	umls:C0024141	BeFree	We previously reported the association of APRIL haplotypes formed by two nonsynonymous polymorphisms, Gly67Arg and Asn96Ser, with systemic lupus erythematosus.	0.007077352	2012	TNFSF13;TNFSF12-TNFSF13	17	7559652	A	G
rs3813946	17360460	1380	CR2	umls:C0024141	BeFree	Single-nucleotide polymorphism 1 (rs3813946), located in the 5' untranslated region of the CR2 gene, altered transcriptional activity, suggesting a potential mechanism by which CR2 could contribute to the development of lupus.	0.128815624	2007	CR2	1	207454348	T	C
rs381575	23637325	4842	NOS1	umls:C0024141	BeFree	In the Gullah, the NADH dehydrogenase NDUFS4 (rs381575; p = 0.0065, OR 2.10, 95% CI 1.23-3.59) and NO synthase gene NOS1 (rs561712; p = 0.0072, OR 0.62, 95% CI 0.44-0.88) were most strongly associated with SLE.	0.000271442	2014	NDUFS4	5	53617061	A	C
rs381575	23637325	4724	NDUFS4	umls:C0024141	BeFree	In the Gullah, the NADH dehydrogenase NDUFS4 (rs381575; p = 0.0065, OR 2.10, 95% CI 1.23-3.59) and NO synthase gene NOS1 (rs561712; p = 0.0072, OR 0.62, 95% CI 0.44-0.88) were most strongly associated with SLE.	0.000271442	2014	NDUFS4	5	53617061	A	C
rs3821236	19165918	6775	STAT4	umls:C0024141	GWASCAT	Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.	0.324188178	2008	STAT4	2	191038032	G	A
rs3827644	23740937	9474	ATG5	umls:C0024141	GWASCAT	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	0.123724241	2014	ATG5	6	106237320	G	C
rs3828903	19851445	3123	HLA-DRB1	umls:C0024141	BeFree	Further, conditional haplotype analyses demonstrated that variation within MICB (class I, rs3828903, p = 0.006) also contributes to SLE risk independent of HLA-DRB1*0301.	0.235879985	2009	MICB	6	31496962	G	A
rs3853839	24919757	51284	TLR7	umls:C0024141	BeFree	In summary, a previously shown association between the rs3853839 SNP of TLR7 and SLE in Asian patients was also found in Danish patients.	0.097611384	2014	TLR7	X	12889539	C	G
rs3853839	24445780	51284	TLR7	umls:C0024141	BeFree	The G-G haplotype of TLR7 rs3853839 and TLR8 rs3764880 increased risk of SLE in females (age adjusted p = 0.0032).	0.097611384	2013	TLR7	X	12889539	C	G
rs3853839	23468661	51311	TLR8	umls:C0024141	BeFree	Here, we conducted trans-ancestral fine-mapping in 13,339 subjects including European Americans, African Americans, and Amerindian/Hispanics and confirmed rs3853839 as the only variant within the TLR7-TLR8 region exhibiting consistent and independent association with SLE (Pmeta = 7.5×10(-11), OR = 1.24 [1.18-1.34]).	0.001357209	2013	TLR7	X	12889539	C	G
rs3853839	20733074	51284	TLR7	umls:C0024141	GAD	[Sex-specific association of X-linked Toll-like receptor 7 (TLR7) with male systemic lupus erythematosus.]	0.097611384	2010	TLR7	X	12889539	C	G
rs3853839	24445780	51311	TLR8	umls:C0024141	BeFree	The G-G haplotype of TLR7 rs3853839 and TLR8 rs3764880 increased risk of SLE in females (age adjusted p = 0.0032).	0.001357209	2013	TLR7	X	12889539	C	G
rs386493716	21682595	7515	XRCC1	umls:C0024141	BeFree	XRCC1 Arg399Gln gene polymorphism and the risk of systemic lupus erythematosus in the Polish population.	0.005819831	2012	NA	NA	NA	NA	NA
rs386493716	24971336	7515	XRCC1	umls:C0024141	BeFree	XRCC1 Arg399Gln and Arg194Trp polymorphisms and risk of systemic lupus erythematosus in an Iranian population: a pilot study.	0.005819831	2014	NA	NA	NA	NA	NA
rs386493716	18852222	7515	XRCC1	umls:C0024141	BeFree	In the present study, we aimed to investigate: (a) the efficiency of SLE peripheral blood leucocytes in repairing DNA damage induced by ionizing radiation and (b) the association of DNA repair gene (XRCC1 Arg399Gln, XRCC3 Thr241Met and XRCC4 Ile401Thr) polymorphisms in SLE patients, considering the whole group, or stratified sub-groups according to clinical and laboratory features.	0.005819831	2008	NA	NA	NA	NA	NA
rs386545546	24971336	7515	XRCC1	umls:C0024141	BeFree	XRCC1 Arg399Gln and Arg194Trp polymorphisms and risk of systemic lupus erythematosus in an Iranian population: a pilot study.	0.005819831	2014	NA	NA	NA	NA	NA
rs386545618	17664238	4524	MTHFR	umls:C0024141	BeFree	However, MTHFR 677C > T (A222V) and MTHFD1 1958G > A (R653Q) allele and genotype frequencies did not exhibit statistical differences between SLE patients and controls.	0.011368221	2007	NA	NA	NA	NA	NA
rs386602118	21678493	627	BDNF	umls:C0024141	BeFree	Our data do not support the common variant Val66Met of the BDNF gene as an etiologic factor in the various forms of PS and serum BDNF levels in SLE.	0.000542884	2011	NA	NA	NA	NA	NA
rs386602118	16606648	627	BDNF	umls:C0024141	BeFree	The Met66 allele of the functional Val66Met polymorphism in the brain-derived neurotrophic factor gene confers protection against neurocognitive dysfunction in systemic lupus erythematosus.	0.000542884	2006	NA	NA	NA	NA	NA
rs386609373	23323522	1493	CTLA4	umls:C0024141	BeFree	CTLA-4 -1722T/C polymorphism and systemic lupus erythematosus susceptibility: a meta-analysis involving ten separate studies.	0.067790707	2013	NA	NA	NA	NA	NA
rs386609373	23922195	1493	CTLA4	umls:C0024141	BeFree	Overall, there was significant association between the 1722T/C polymorphism and overall SLE risks (OR = 0.78, 95 % CI = 0.63-0.97, P = 0.04 for GG+GA vs. AA, OR = 0.87, 95 % CI = 0.76-0.99, P = 0.04 for G vs. A) in Asian population.In summary, this meta-analysis demonstrates that the CTLA-4 promoter +49A/G and promoter -1722C/T polymorphism may confer susceptibility to SLE, especially in Asian-derived population.	0.067790707	2012	NA	NA	NA	NA	NA
rs386609373	24940764	1493	CTLA4	umls:C0024141	BeFree	CTLA-4 SNPs (CT60A/G, -1722T/C, -1661G/A, and -318C/T) and systemic lupus erythematosus: a meta-analysis.	0.067790707	2015	NA	NA	NA	NA	NA
rs3871466	NA	394263	MUC21	umls:C0024141	GAD	NA	0.004734064	NA	MUC22	6	31015906	T	C
rs389883	NA	8859	STK19	umls:C0024141	GAD	NA	0.007101096	NA	STK19	6	31979683	G	T
rs389884	NA	1797	DXO	umls:C0024141	GAD	NA	0.005005506	NA	DXO;STK19	6	31973120	A	G
rs389884	NA	8859	STK19	umls:C0024141	GAD	NA	0.007101096	NA	DXO;STK19	6	31973120	A	G
rs389884	18204098	8859	STK19	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.007101096	2008	DXO;STK19	6	31973120	A	G
rs389884	18204098	1797	DXO	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.005005506	2008	DXO;STK19	6	31973120	A	G
rs41322052	23481632	4846	NOS3	umls:C0024141	BeFree	The purpose of this study was to analyse the effect of the T-786C polymorphism and intron 4 27 bp variable number tandem repeat(VNTR) eNOS markers for their potential association with Systemic Lupus Erythematosus(SLE), Hashimotos thyroiditis(HT) and Rheumatoid arthritis(RA) as well as to explore their effect on eNOS mRNA expression and nitrate production(NOx).	0.013082749	2013	NOS3	7	150993018	C	T
rs419788	17997607	1791	DNTT	umls:C0024141	BeFree	Using TDT and conditional regression analyses, we have demonstrated the presence of two distinct and independent association signals in SLE: HLA-DRB1*0301 (nominal p = 4.9 x 10(-8), permuted p < 0.0001, OR = 2.3) and the T allele of SNP rs419788 (nominal p = 4.3 x 10(-8), permuted p < 0.0001, OR = 2.0) in intron 6 of the class III region gene SKIV2L.	0.000542884	2007	SKIV2L;NELFE	6	31961022	T	C
rs419788	17997607	6499	SKIV2L	umls:C0024141	BeFree	Using TDT and conditional regression analyses, we have demonstrated the presence of two distinct and independent association signals in SLE: HLA-DRB1*0301 (nominal p = 4.9 x 10(-8), permuted p < 0.0001, OR = 2.3) and the T allele of SNP rs419788 (nominal p = 4.3 x 10(-8), permuted p < 0.0001, OR = 2.0) in intron 6 of the class III region gene SKIV2L.	0.00764398	2007	SKIV2L;NELFE	6	31961022	T	C
rs419788	17997607	3123	HLA-DRB1	umls:C0024141	BeFree	Using TDT and conditional regression analyses, we have demonstrated the presence of two distinct and independent association signals in SLE: HLA-DRB1*0301 (nominal p = 4.9 x 10(-8), permuted p < 0.0001, OR = 2.3) and the T allele of SNP rs419788 (nominal p = 4.3 x 10(-8), permuted p < 0.0001, OR = 2.0) in intron 6 of the class III region gene SKIV2L.	0.235879985	2007	SKIV2L;NELFE	6	31961022	T	C
rs437179	NA	6499	SKIV2L	umls:C0024141	GAD	NA	0.00764398	NA	SKIV2L	6	31961237	A	C
rs4553808	24940764	1493	CTLA4	umls:C0024141	BeFree	CTLA-4 SNPs (CT60A/G, -1722T/C, -1661G/A, and -318C/T) and systemic lupus erythematosus: a meta-analysis.	0.067790707	2015	CTLA4	2	203866282	A	G
rs4639966	19838193	11181	TREH	umls:C0024141	GAD	[Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.]	0.002367032	2009	LOC105369519	11	118702810	T	C
rs4646903	22217397	133482	SLCO6A1	umls:C0024141	BeFree	We investigated the relationship of the cytochrome P450 (CYP) 1A1 rs4646903 and glutathione S-transferase (GST) M1 deletion polymorphisms to SLE risk with attention to interaction with cigarette smoking among 151 SLE cases and 421 controls in female Japanese subjects.	0.001085767	2012	CYP1A1	15	74719300	A	T,G
rs4646903	22217397	27306	HPGDS	umls:C0024141	BeFree	We investigated the relationship of the cytochrome P450 (CYP) 1A1 rs4646903 and glutathione S-transferase (GST) M1 deletion polymorphisms to SLE risk with attention to interaction with cigarette smoking among 151 SLE cases and 421 controls in female Japanese subjects.	0.001900093	2012	CYP1A1	15	74719300	A	T,G
rs4678	18204098	57176	VARS2	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.004734064	2008	VARS2	6	30926164	G	A
rs4728142	NA	375616	KCP	umls:C0024141	GAD	NA	0.004734064	NA	NA	7	128933913	G	A
rs4728142	19838193	375616	KCP	umls:C0024141	GAD	[Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.]	0.004734064	2009	NA	7	128933913	G	A
rs4852324	23273568	100874048	DGUOK-AS1	umls:C0024141	GWASCAT	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	0.12	2013	DGUOK-AS1	2	73975451	T	C
rs4917014	20516000	10318	TNIP1	umls:C0024141	BeFree	Significant associations were found for the single nucleotide polymorphism rs10036748 of TNIP1 with photosensitivity (odds ratio (OR) = 0.87, p = 0.01) and vasculitis (OR = 1.18, p = 0.04); rs10847697 of SLC15A4 with discoid rash (OR = 1.18, p = 0.02); rs6590330 of ETS1 with SLE of age at diagnosis <20 years (OR = 1.24, p = 8.91 x 10(-5)); rs13385731 of RasGRP3 with malar rash (OR = 1.20, p = 0.01), discoid rash (OR = 0.78, p = 0.02) and ANA (OR = 0.72, p = 0.004); rs4917014 of IKZF1 with renal nephritis (OR = 1.13, p = 0.02) and malar rash (OR = 0.83, p = 0.00038), respectively.	0.249544073	2010	NA	7	50266267	T	G
rs4917014	24013639	713	C1QB	umls:C0024141	BeFree	Some of these SNPs affect multiple genes in trans that are known to be altered in individuals with disease: rs4917014, previously associated with systemic lupus erythematosus (SLE), altered gene expression of C1QB and five type I interferon response genes, both hallmarks of SLE.	0.010553895	2013	NA	7	50266267	T	G
rs4917014	20516000	121260	SLC15A4	umls:C0024141	BeFree	Significant associations were found for the single nucleotide polymorphism rs10036748 of TNIP1 with photosensitivity (odds ratio (OR) = 0.87, p = 0.01) and vasculitis (OR = 1.18, p = 0.04); rs10847697 of SLC15A4 with discoid rash (OR = 1.18, p = 0.02); rs6590330 of ETS1 with SLE of age at diagnosis <20 years (OR = 1.24, p = 8.91 x 10(-5)); rs13385731 of RasGRP3 with malar rash (OR = 1.20, p = 0.01), discoid rash (OR = 0.78, p = 0.02) and ANA (OR = 0.72, p = 0.004); rs4917014 of IKZF1 with renal nephritis (OR = 1.13, p = 0.02) and malar rash (OR = 0.83, p = 0.00038), respectively.	0.24554839	2010	NA	7	50266267	T	G
rs4917014	19838193	100130988	C7orf72	umls:C0024141	GAD	[Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.]	0.002367032	2009	NA	7	50266267	T	G
rs4917014	19838193	10320	IKZF1	umls:C0024141	GAD	[Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.]	0.126634157	2009	NA	7	50266267	T	G
rs4948496	23273568	84159	ARID5B	umls:C0024141	GWASCAT	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	0.120542884	2013	ARID5B	10	62045858	T	C
rs4956211	21408207	64850	ETNPPL	umls:C0024141	GAD	[Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.]	0.002367032	2011	NA	4	108801970	G	A
rs4963128	21360504	57661	PHRF1	umls:C0024141	BeFree	We genotyped one KIAA1542 SNP (rs4963128) and one IRF7 SNP (rs1131665 [Q412R]) in an Asian population (1,302 cases, 1,479 controls), to assess their association with SLE.	0.256188161	2011	PHRF1	11	589564	T	C
rs4963128	18204446	57661	PHRF1	umls:C0024141	GAD	[Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.]	0.256188161	2008	PHRF1	11	589564	T	C
rs4963128	21167895	6737	TRIM21	umls:C0024141	BeFree	Additionally, rs4963128 and rs2246614 were correlated with a variety of clinical subphenotypes, such as lupus nephritis, arthritis, and the production of anti-SSA/B autoantibodies, despite a lack of significant association between these two SNPs and SLE disease susceptibility in general.	0.022473594	2011	PHRF1	11	589564	T	C
rs4963128	18204446	57661	PHRF1	umls:C0024141	GWASCAT	Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.	0.256188161	2008	PHRF1	11	589564	T	C
rs4986790	25182168	54106	TLR9	umls:C0024141	BeFree	Association of TLR4 (D299G, T399I), TLR9 -1486T>C, TIRAP S180L and TNF-α promoter (-1031, -863, -857) polymorphisms with risk for systemic lupus erythematosus among South Indians.	0.02586038	2015	TLR4	9	117713024	A	G
rs4986790	25182168	7124	TNF	umls:C0024141	BeFree	Association of TLR4 (D299G, T399I), TLR9 -1486T>C, TIRAP S180L and TNF-α promoter (-1031, -863, -857) polymorphisms with risk for systemic lupus erythematosus among South Indians.	0.12094984	2015	TLR4	9	117713024	A	G
rs4986790	25182168	7099	TLR4	umls:C0024141	BeFree	Association of TLR4 (D299G, T399I), TLR9 -1486T>C, TIRAP S180L and TNF-α promoter (-1031, -863, -857) polymorphisms with risk for systemic lupus erythematosus among South Indians.	0.003257302	2015	TLR4	9	117713024	A	G
rs4986791	25182168	7124	TNF	umls:C0024141	BeFree	Association of TLR4 (D299G, T399I), TLR9 -1486T>C, TIRAP S180L and TNF-α promoter (-1031, -863, -857) polymorphisms with risk for systemic lupus erythematosus among South Indians.	0.12094984	2015	TLR4	9	117713324	C	T
rs4986791	25182168	54106	TLR9	umls:C0024141	BeFree	Association of TLR4 (D299G, T399I), TLR9 -1486T>C, TIRAP S180L and TNF-α promoter (-1031, -863, -857) polymorphisms with risk for systemic lupus erythematosus among South Indians.	0.02586038	2015	TLR4	9	117713324	C	T
rs4986791	25182168	7099	TLR4	umls:C0024141	BeFree	Association of TLR4 (D299G, T399I), TLR9 -1486T>C, TIRAP S180L and TNF-α promoter (-1031, -863, -857) polymorphisms with risk for systemic lupus erythematosus among South Indians.	0.003257302	2015	TLR4	9	117713324	C	T
rs4986791	24243911	7099	TLR4	umls:C0024141	BeFree	In the Polish population of SLE patients, 1196C/T polymorphism of TLR4 gene does not increase the risk of development of NPSLE; however, genotype CC and a dominant allele C is associated with arthritis in the course of SLE.	0.003257302	2014	TLR4	9	117713324	C	T
rs5029939	21905002	7128	TNFAIP3	umls:C0024141	BeFree	Single-marker analysis validated the association of BLK rs2736340 (P=4.25×10(-6)) as well as TNFSF4 rs2205960 (P=2.82×10(-5)) and TNFAIP3 rs5029939 (P=1.92×10(-3)) with SLE susceptibility in Chinese.	0.268175211	2012	TNFAIP3	6	137874586	C	G
rs5029939	19165918	7128	TNFAIP3	umls:C0024141	GAD	[Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.]	0.268175211	2008	TNFAIP3	6	137874586	C	G
rs5029939	19165918	7128	TNFAIP3	umls:C0024141	GWASCAT	Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.	0.268175211	2008	TNFAIP3	6	137874586	C	G
rs5029941	20483768	7128	TNFAIP3	umls:C0024141	BeFree	There are two nonsynonymous coding polymorphisms in the deubiquitinating (DUB) domain of TNFAIP3: F127C, which is in high-linkage disequilibrium with reported SLE-risk variants, and A125V, which has not been previously studied.	0.268175211	2010	TNFAIP3	6	137874923	C	T
rs507230	21437871	3301	DNAJA1	umls:C0024141	BeFree	Association with SLE was confirmed for several genes, including those for the transmembrane receptor CD44 (CD44 [rs507230]; P = 3.98 × 10⁻¹²), the cytokine pleiotrophin (PTN [rs919581]; P = 5.38 × 10⁻⁴), the heat-shock protein DnaJ (DNAJA1 [rs10971259]; P = 6.31 × 10⁻³), and the nuclear import protein karyopherin α1 (KPNA [rs6810306]; P = 4.91 × 10⁻²).	0.000271442	2011	NA	11	35107625	G	A
rs507230	21437871	5764	PTN	umls:C0024141	BeFree	Association with SLE was confirmed for several genes, including those for the transmembrane receptor CD44 (CD44 [rs507230]; P = 3.98 × 10⁻¹²), the cytokine pleiotrophin (PTN [rs919581]; P = 5.38 × 10⁻⁴), the heat-shock protein DnaJ (DNAJA1 [rs10971259]; P = 6.31 × 10⁻³), and the nuclear import protein karyopherin α1 (KPNA [rs6810306]; P = 4.91 × 10⁻²).	0.000271442	2011	NA	11	35107625	G	A
rs525410	21408207	3918	LAMC2	umls:C0024141	GAD	[Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.]	0.122638474	2011	LAMC2	1	183207295	A	G
rs525410	21408207	3918	LAMC2	umls:C0024141	GWASCAT	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	0.122638474	2011	LAMC2	1	183207295	A	G
rs543355	23039241	284217	LAMA1	umls:C0024141	BeFree	To evaluate the association between LAMA1 (rs543355) and LAMC1 (rs20563) polymorphisms and the presence of SLE and PE as well as to determine serum levels of anti-LM-111 autoantibodies in the PE group.	0.000271442	2013	LAMA1	18	6958610	T	C,G
rs548234	19838193	9474	ATG5	umls:C0024141	GAD	[Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.]	0.123724241	2009	NA	6	106120159	C	T
rs548234	19838193	639	PRDM1	umls:C0024141	GAD	[Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.]	0.206362715	2009	NA	6	106120159	C	T
rs549908	19288449	3606	IL18	umls:C0024141	BeFree	An IL-18 genetic A/C polymorphism at coding position 105 (rs549908) has been linked with asthma, rheumatoid, and systemic lupus erythematosus.	0.030885749	2009	IL18	11	112150193	T	A,G
rs558702	18204098	717	C2	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.135016517	2008	C2;ZBTB12	6	31902549	G	A
rs558702	24871463	221527	ZBTB12	umls:C0024141	GWASCAT	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	0.124734064	2014	C2;ZBTB12	6	31902549	G	A
rs558702	NA	221527	ZBTB12	umls:C0024141	GAD	NA	0.124734064	NA	C2;ZBTB12	6	31902549	G	A
rs558702	18204098	221527	ZBTB12	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.124734064	2008	C2;ZBTB12	6	31902549	G	A
rs558702	NA	717	C2	umls:C0024141	GAD	NA	0.135016517	NA	C2;ZBTB12	6	31902549	G	A
rs558702	24871463	717	C2	umls:C0024141	GWASCAT	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	0.135016517	2014	C2;ZBTB12	6	31902549	G	A
rs561712	23637325	4842	NOS1	umls:C0024141	BeFree	In the Gullah, the NADH dehydrogenase NDUFS4 (rs381575; p = 0.0065, OR 2.10, 95% CI 1.23-3.59) and NO synthase gene NOS1 (rs561712; p = 0.0072, OR 0.62, 95% CI 0.44-0.88) were most strongly associated with SLE.	0.000271442	2014	NOS1	12	117314264	C	T
rs561712	23637325	4724	NDUFS4	umls:C0024141	BeFree	In the Gullah, the NADH dehydrogenase NDUFS4 (rs381575; p = 0.0065, OR 2.10, 95% CI 1.23-3.59) and NO synthase gene NOS1 (rs561712; p = 0.0072, OR 0.62, 95% CI 0.44-0.88) were most strongly associated with SLE.	0.000271442	2014	NOS1	12	117314264	C	T
rs573775	24205307	7124	TNF	umls:C0024141	BeFree	The present work analyzed the association of Atg5 rs573775 single nucleotide polymorphism (SNP) with SLE susceptibility, IFNα, TNFα and IL-10 serum levels, and clinical features, in 115 patients and 170 healthy individuals.	0.12094984	2013	ATG5	6	106316991	G	A
rs573775	24205307	3447	IFNA13	umls:C0024141	BeFree	The present work analyzed the association of Atg5 rs573775 single nucleotide polymorphism (SNP) with SLE susceptibility, IFNα, TNFα and IL-10 serum levels, and clinical features, in 115 patients and 170 healthy individuals.	0.022801117	2013	ATG5	6	106316991	G	A
rs5743836	22065095	54106	TLR9	umls:C0024141	BeFree	We suggest that TLR7 rs179008 and TLR9 rs5743836 can be considered SLE susceptibility factors for women of European descent in our population.	0.02586038	2012	TLR9	3	52226766	A	G
rs5743836	22065095	51284	TLR7	umls:C0024141	BeFree	We suggest that TLR7 rs179008 and TLR9 rs5743836 can be considered SLE susceptibility factors for women of European descent in our population.	0.097611384	2012	TLR9	3	52226766	A	G
rs5844572	22127710	6280	S100A9	umls:C0024141	BeFree	Two functional polymorphisms in the MIF gene, a -794 CATT(5-8) microsatellite repeat (rs5844572) and a -173 G/C single-nucleotide polymorphism (rs755622), were assessed for association with SLE in 3,195 patients and healthy controls.	0.001628651	2011	MIF;MIF-AS1	22	23893563	-	CATT,CATTCATT,CATTCATTCATT
rs6049839	21408207	117532	TMC2	umls:C0024141	GAD	[Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.]	0.002367032	2011	TMC2;LOC105372504	20	2537919	G	T
rs6104	17657675	5055	SERPINB2	umls:C0024141	BeFree	Genotype Ser413/Ser of PAI-2 polymorphism Ser413/Cys is associated with anti-phospholipid syndrome and systemic lupus erythematosus in a familial case: comparison with healthy controls.	0.005634266	2007	SERPINB2	18	63903295	C	G
rs61756766	26097183	115650	TNFRSF13C	umls:C0024141	BeFree	The corresponding frequencies of the His159Tyr BAFF-R mutation in SLE and RA patients were 3.5% and 3%, respectively.	0.004353001	2015	TNFRSF13C	22	41925447	G	A
rs638893	24001599	1656	DDX6	umls:C0024141	BeFree	We discovered multiple susceptibility variants for SLE in the 11q23.3 region, including variants in/near PHLDB1 (rs11603023, P(_combined) = 1.25E-08, OR = 1.20), DDX6 (rs638893, P(_combined) = 5.19E-07, OR = 1.22) and CXCR5 (rs10892301, P(_combined) = 2.51E-08, OR = 0.85).	0.000271442	2014	NA	11	118827828	G	A
rs638893	24001599	23187	PHLDB1	umls:C0024141	BeFree	We discovered multiple susceptibility variants for SLE in the 11q23.3 region, including variants in/near PHLDB1 (rs11603023, P(_combined) = 1.25E-08, OR = 1.20), DDX6 (rs638893, P(_combined) = 5.19E-07, OR = 1.22) and CXCR5 (rs10892301, P(_combined) = 2.51E-08, OR = 0.85).	0.000271442	2014	NA	11	118827828	G	A
rs638893	24001599	643	CXCR5	umls:C0024141	BeFree	We discovered multiple susceptibility variants for SLE in the 11q23.3 region, including variants in/near PHLDB1 (rs11603023, P(_combined) = 1.25E-08, OR = 1.20), DDX6 (rs638893, P(_combined) = 5.19E-07, OR = 1.22) and CXCR5 (rs10892301, P(_combined) = 2.51E-08, OR = 0.85).	0.001085767	2014	NA	11	118827828	G	A
rs6445975	18204446	54899	PXK	umls:C0024141	GWASCAT	Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.	0.256188161	2008	PXK	3	58384450	G	T
rs6445975	20881011	54899	PXK	umls:C0024141	GAD	[The genetic contribution towards predicting early-onset disease in patients with SLE is quantified for the first time. A more severe SLE phenotype is found in patients with early-onset disease in a large multi-racial cohort, independent of gender, race an]	0.256188161	2011	PXK	3	58384450	G	T
rs6445975	18204446	54899	PXK	umls:C0024141	GAD	[Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.]	0.256188161	2008	PXK	3	58384450	G	T
rs6457617	18204098	3119	HLA-DQB1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.042830529	2008	NA	6	32696074	C	T
rs652888	18204098	10919	EHMT2	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.007101096	2008	EHMT2	6	31883457	A	G
rs652888	NA	10919	EHMT2	umls:C0024141	GAD	NA	0.007101096	NA	EHMT2	6	31883457	A	G
rs6590330	20516000	10318	TNIP1	umls:C0024141	BeFree	Significant associations were found for the single nucleotide polymorphism rs10036748 of TNIP1 with photosensitivity (odds ratio (OR) = 0.87, p = 0.01) and vasculitis (OR = 1.18, p = 0.04); rs10847697 of SLC15A4 with discoid rash (OR = 1.18, p = 0.02); rs6590330 of ETS1 with SLE of age at diagnosis <20 years (OR = 1.24, p = 8.91 x 10(-5)); rs13385731 of RasGRP3 with malar rash (OR = 1.20, p = 0.01), discoid rash (OR = 0.78, p = 0.02) and ANA (OR = 0.72, p = 0.004); rs4917014 of IKZF1 with renal nephritis (OR = 1.13, p = 0.02) and malar rash (OR = 0.83, p = 0.00038), respectively.	0.249544073	2010	LOC105369566	11	128441164	G	A
rs6590330	19838193	2113	ETS1	umls:C0024141	GAD	[Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.]	0.253539756	2009	LOC105369566	11	128441164	G	A
rs6590330	20516000	121260	SLC15A4	umls:C0024141	BeFree	Significant associations were found for the single nucleotide polymorphism rs10036748 of TNIP1 with photosensitivity (odds ratio (OR) = 0.87, p = 0.01) and vasculitis (OR = 1.18, p = 0.04); rs10847697 of SLC15A4 with discoid rash (OR = 1.18, p = 0.02); rs6590330 of ETS1 with SLE of age at diagnosis <20 years (OR = 1.24, p = 8.91 x 10(-5)); rs13385731 of RasGRP3 with malar rash (OR = 1.20, p = 0.01), discoid rash (OR = 0.78, p = 0.02) and ANA (OR = 0.72, p = 0.004); rs4917014 of IKZF1 with renal nephritis (OR = 1.13, p = 0.02) and malar rash (OR = 0.83, p = 0.00038), respectively.	0.24554839	2010	LOC105369566	11	128441164	G	A
rs6590330	25865496	6772	STAT1	umls:C0024141	BeFree	We propose a model in which the risk allele of rs6590330 is associated with decreased ETS1 expression and increases SLE risk by enhancing the binding of pSTAT1.	0.007448483	2015	LOC105369566	11	128441164	G	A
rs6677604	21637784	10877	CFHR4	umls:C0024141	BeFree	Significant allelic associations with SLE were detected in European Americans (EA) and African Americans (AA), which could be attributed to an intronic CFH SNP (rs6677604, in intron 11, P(meta) = 6.6×10(-8), OR = 1.18) and an intergenic SNP between CFHR1 and CFHR4 (rs16840639, P(meta) = 2.9×10(-7), OR = 1.17) rather than to previously identified disease-associated CFH exonic SNPs, including I62V, Y402H, A474A, and D936E.	0.000271442	2011	CFH	1	196717788	G	A
rs6677604	21637784	3078	CFHR1	umls:C0024141	BeFree	Significant allelic associations with SLE were detected in European Americans (EA) and African Americans (AA), which could be attributed to an intronic CFH SNP (rs6677604, in intron 11, P(meta) = 6.6×10(-8), OR = 1.18) and an intergenic SNP between CFHR1 and CFHR4 (rs16840639, P(meta) = 2.9×10(-7), OR = 1.17) rather than to previously identified disease-associated CFH exonic SNPs, including I62V, Y402H, A474A, and D936E.	0.000271442	2011	CFH	1	196717788	G	A
rs6695567	21408207	6512	SLC1A7	umls:C0024141	GAD	[Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.]	0.002367032	2011	NA	1	53163913	G	A
rs6705628	23273568	100874048	DGUOK-AS1	umls:C0024141	GWASCAT	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	0.12	2013	DGUOK-AS1	2	73981235	C	T
rs6804441	23273568	941	CD80	umls:C0024141	GWASCAT	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	0.123995683	2013	CD80	3	119542097	A	G
rs6810306	21437871	5764	PTN	umls:C0024141	BeFree	Association with SLE was confirmed for several genes, including those for the transmembrane receptor CD44 (CD44 [rs507230]; P = 3.98 × 10⁻¹²), the cytokine pleiotrophin (PTN [rs919581]; P = 5.38 × 10⁻⁴), the heat-shock protein DnaJ (DNAJA1 [rs10971259]; P = 6.31 × 10⁻³), and the nuclear import protein karyopherin α1 (KPNA [rs6810306]; P = 4.91 × 10⁻²).	0.000271442	2011	PARP9;LOC105374071	3	122529863	G	A
rs6810306	21437871	3301	DNAJA1	umls:C0024141	BeFree	Association with SLE was confirmed for several genes, including those for the transmembrane receptor CD44 (CD44 [rs507230]; P = 3.98 × 10⁻¹²), the cytokine pleiotrophin (PTN [rs919581]; P = 5.38 × 10⁻⁴), the heat-shock protein DnaJ (DNAJA1 [rs10971259]; P = 6.31 × 10⁻³), and the nuclear import protein karyopherin α1 (KPNA [rs6810306]; P = 4.91 × 10⁻²).	0.000271442	2011	PARP9;LOC105374071	3	122529863	G	A
rs6822844	20112382	59067	IL21	umls:C0024141	GAD	[Our results indicate that there is an association between rs6822844 and multiple autoimmune diseases in non-European populations. Meta-analysis results strongly reinforce this robust association across multiple autoimmune diseases in both European-derived]	0.135439849	2010	NA	4	122588266	G	T
rs6822844	20112382	3558	IL2	umls:C0024141	GAD	[Our results indicate that there is an association between rs6822844 and multiple autoimmune diseases in non-European populations. Meta-analysis results strongly reinforce this robust association across multiple autoimmune diseases in both European-derived]	0.025579006	2010	NA	4	122588266	G	T
rs6935269	NA	10665	C6orf10	umls:C0024141	GAD	NA	0.009468128	NA	C6orf10;LOC101929163;LOC105379622;LOC105379643;LOC105379657	6	32292573	T	C
rs702966	20112359	3663	IRF5	umls:C0024141	BeFree	In European American and Hispanic American patients, the IRF5 SLE risk haplotype showed an additive effect with the rs702966 C allele on IFNalpha level in anti-dsDNA-positive patients.	0.234583243	2010	PHRF1	11	611919	C	G
rs704840	23740937	100506023	LOC100506023	umls:C0024141	GWASCAT	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	0.12	2014	LOC100506023	1	173257056	T	G
rs7062536	25149475	5634	PRPS2	umls:C0024141	BeFree	We identified a novel variant in PRPS2 on Xp22.3 as associated with SLE with genome-wide significance (rs7062536, OR = 0.84, P = 1.00E-08).	0.000271442	2015	PRPS2	X	12821033	G	A
rs707928	NA	80737	VWA7	umls:C0024141	GAD	NA	0.004734064	NA	VWA7	6	31774813	A	G
rs7097397	20169177	57705	WDFY4	umls:C0024141	GWASCAT	Genome-wide association study in Asian populations identifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosus.	0.128186863	2010	WDFY4	10	48817351	G	A
rs7097397	20169177	57705	WDFY4	umls:C0024141	GAD	[Genome-wide association study in Asian populations identifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosus.]	0.128186863	2010	WDFY4	10	48817351	G	A
rs7186852	19838193	115509	ZNF689	umls:C0024141	GAD	[Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.]	0.002367032	2009	NA	16	30624338	A	G
rs7192	18204098	3122	HLA-DRA	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.010011012	2008	HLA-DRA	6	32443869	T	G
rs7192	NA	3122	HLA-DRA	umls:C0024141	GAD	NA	0.010011012	NA	HLA-DRA	6	32443869	T	G
rs7197475	19838193	115509	ZNF689	umls:C0024141	GAD	[Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.]	0.002367032	2009	NA	16	30631546	C	T
rs72556554	18805785	11277	TREX1	umls:C0024141	BeFree	By comparison, the TREX1 R114H homozygous mutation causes AGS and is found as a heterozygous mutation in systemic lupus erythematosus.	0.251887361	2008	TREX1	3	48466996	G	A,C
rs72556554	21937424	11277	TREX1	umls:C0024141	BeFree	The TREX1 exonuclease R114H mutation in Aicardi-Goutières syndrome and lupus reveals dimeric structure requirements for DNA degradation activity.	0.251887361	2011	TREX1	3	48466996	G	A,C
rs72556555	17660818	11277	TREX1	umls:C0024141	UNIPROT	Mutations in the gene encoding the 3'-5' DNA exonuclease TREX1 are associated with systemic lupus erythematosus.	0.251887361	2007	TREX1;SHISA5	3	48467375	G	A,C
rs729302	20881011	3663	IRF5	umls:C0024141	GAD	[The genetic contribution towards predicting early-onset disease in patients with SLE is quantified for the first time. A more severe SLE phenotype is found in patients with early-onset disease in a large multi-racial cohort, independent of gender, race an]	0.234583243	2011	NA	7	128928906	A	C
rs729302	21239750	3663	IRF5	umls:C0024141	BeFree	The IRF5 haplotype (rs729302 A, rs2004640 T, and rs2280714 T), which was reported as conferring an increased risk of SLE, was significantly associated with MAS susceptibility in patients with systemic JIA (OR 4.61; 95% CI 1.73, 12.3; p < 0.001).	0.234583243	2011	NA	7	128928906	A	C
rs7329174	21044949	1997	ELF1	umls:C0024141	GAD	[ELF1 is associated with systemic lupus erythematosus in Asian populations.]	0.123724241	2011	ELF1	13	40983974	A	G
rs7329174	21044949	1997	ELF1	umls:C0024141	GWASCAT	ELF1 is associated with systemic lupus erythematosus in Asian populations.	0.123724241	2011	ELF1	13	40983974	A	G
rs733618	23323522	1493	CTLA4	umls:C0024141	BeFree	CTLA-4 -1722T/C polymorphism and systemic lupus erythematosus susceptibility: a meta-analysis involving ten separate studies.	0.067790707	2013	CTLA4	2	203866221	T	C
rs733618	23261408	1211	CLTA	umls:C0024141	BeFree	These results suggest that there is evidence of association between the CLTA-4 and SLE, especially -1722T/C polymorphism (rs733618).	0.000271442	2013	CTLA4	2	203866221	T	C
rs733618	23922195	1493	CTLA4	umls:C0024141	BeFree	Overall, there was significant association between the 1722T/C polymorphism and overall SLE risks (OR = 0.78, 95 % CI = 0.63-0.97, P = 0.04 for GG+GA vs. AA, OR = 0.87, 95 % CI = 0.76-0.99, P = 0.04 for G vs. A) in Asian population.In summary, this meta-analysis demonstrates that the CTLA-4 promoter +49A/G and promoter -1722C/T polymorphism may confer susceptibility to SLE, especially in Asian-derived population.	0.067790707	2012	CTLA4	2	203866221	T	C
rs733618	24940764	1493	CTLA4	umls:C0024141	BeFree	CTLA-4 SNPs (CT60A/G, -1722T/C, -1661G/A, and -318C/T) and systemic lupus erythematosus: a meta-analysis.	0.067790707	2015	CTLA4	2	203866221	T	C
rs7396562	24826913	59307	SIGIRR	umls:C0024141	BeFree	The aim of this study was to examine the association of a single-nucleotide polymorphism, rs7396562, of the interferon induced with single immunoglobulin IL-1-related receptor (SIGIRR) gene with SLE in a Chinese population.	0.000542884	2015	SIGIRR	11	408352	C	A
rs755622	22127710	6280	S100A9	umls:C0024141	BeFree	Two functional polymorphisms in the MIF gene, a -794 CATT(5-8) microsatellite repeat (rs5844572) and a -173 G/C single-nucleotide polymorphism (rs755622), were assessed for association with SLE in 3,195 patients and healthy controls.	0.001628651	2011	MIF;MIF-AS1	22	23894205	G	C
rs7574865	17932559	6775	STAT4	umls:C0024141	BeFree	A recent study in the North American White population has documented the association of a common STAT4 haplotype (tagged by rs7574865) with risk for rheumatoid arthritis (RA) and systemic lupus erythematosus.	0.324188178	2007	STAT4	2	191099907	T	G
rs7574865	20881011	6775	STAT4	umls:C0024141	GAD	[The genetic contribution towards predicting early-onset disease in patients with SLE is quantified for the first time. A more severe SLE phenotype is found in patients with early-onset disease in a large multi-racial cohort, independent of gender, race an]	0.324188178	2011	STAT4	2	191099907	T	G
rs7574865	21408207	6775	STAT4	umls:C0024141	GWASCAT	For example, rs7574865 in STAT4 had an OR for anti-dsDNA + SLE of 1.77 (95% CI 1.57-1.99, p = 2.0E-20) compared to an OR for anti-dsDNA - SLE of 1.26 (95% CI 1.12-1.41, p = 2.4E-04), with p(heterogeneity)<0.0005.	0.324188178	2011	STAT4	2	191099907	T	G
rs7574865	23912645	6775	STAT4	umls:C0024141	BeFree	Association of STAT4 rs7574865 with susceptibility to systemic lupus erythematosus in Iranian population.	0.324188178	2014	STAT4	2	191099907	T	G
rs7574865	23628400	6775	STAT4	umls:C0024141	BeFree	Furthermore, the stratified meta-analysis also demonstrate that the STAT4 rs7574865 polymorphism is associated with the presence of autoantibodies with systemic reactivity (anti-ds-DNA antibodies) in SLE patients (OR = 1.37; 95% CI = 1.21 - 1.56, P = 1.12 × 10(-6)).	0.324188178	2013	STAT4	2	191099907	T	G
rs7574865	23273568	6775	STAT4	umls:C0024141	GWASCAT	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	0.324188178	2013	STAT4	2	191099907	T	G
rs7574865	24871463	6775	STAT4	umls:C0024141	GWASCAT	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	0.324188178	2014	STAT4	2	191099907	T	G
rs7574865	22714917	6775	STAT4	umls:C0024141	BeFree	This meta-analysis demonstrates that the STAT4 rs7574865 T allele confers susceptibility to SLE, RA, T1D, SSc, JIA, APS, IBD-UC, and pSS patients, supporting the hypothesis of association between STAT4 gene polymorphism and subgroup of autoimmune diseases.	0.324188178	2012	STAT4	2	191099907	T	G
rs7574865	18204098	6775	STAT4	umls:C0024141	GWASCAT	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	0.324188178	2008	STAT4	2	191099907	T	G
rs7574865	19838193	6775	STAT4	umls:C0024141	GWASCAT	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	0.324188178	2009	STAT4	2	191099907	T	G
rs7574865	21408207	6775	STAT4	umls:C0024141	GAD	[For example, rs7574865 in STAT4 had an OR for anti-dsDNA + SLE of 1.77 (95% CI 1.57-1.99, pa=a2.0E-20) compared to an OR for anti-dsDNA - SLE of 1.26 (95% CI 1.12-1.41, pa=a2.4E-04), with p(heterogeneity)<0.0005.]	0.324188178	2011	STAT4	2	191099907	T	G
rs7574865	25882064	3447	IFNA13	umls:C0024141	BeFree	Using a list of 11 single nucleotide polymorphisms from the results of genome-wide association studies for systemic lupus erythematosus, which we hypothesised would be enriched in variants that regulate type-I IFN production, we identified a genetic risk score based on 3 single nucleotide polymorphisms (rs10516487, rs3131379 and rs7574865), which correlated significantly with production of IFN-α by human peripheral leukocytes stimulated with CpG-oligonucleotide (n=60, P=1.50 × 10(-5)).	0.022801117	2015	STAT4	2	191099907	T	G
rs7574865	21408207	6775	STAT4	umls:C0024141	BeFree	For example, rs7574865 in STAT4 had an OR for anti-dsDNA + SLE of 1.77 (95% CI 1.57-1.99, p = 2.0E-20) compared to an OR for anti-dsDNA - SLE of 1.26 (95% CI 1.12-1.41, p = 2.4E-04), with p(heterogeneity)<0.0005.	0.324188178	2011	STAT4	2	191099907	T	G
rs7574865	18759272	6775	STAT4	umls:C0024141	BeFree	Recently, the association of a STAT4 haplotype marked by rs7574865 with rheumatoid arthritis (RA) and systemic lupus erythematosus was reported.	0.324188178	2008	STAT4	2	191099907	T	G
rs7574865	18273036	6775	STAT4	umls:C0024141	BeFree	To test the hypothesis that the variant haplotype of STAT4 seen in RA and SLE is also associated with pSS, we genotyped rs7574865, the most strongly disease-associated SNP in the variant STAT4 haplotype, in 124 Caucasian pSS subjects and compared them to 1143 Caucasian controls.	0.324188178	2008	STAT4	2	191099907	T	G
rs7574865	23053960	6775	STAT4	umls:C0024141	GWASCAT	In the non-HLA region, meta-analysis identified 6 SNPs associated with SLE with genome-wide significance (STAT4, TNPO3, BLK, FAM167A, and IRF5).	0.324188178	2012	STAT4	2	191099907	T	G
rs7601754	23740937	6775	STAT4	umls:C0024141	GWASCAT	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	0.324188178	2014	STAT4	2	191075725	G	A
rs763110	15674374	356	FASLG	umls:C0024141	BeFree	The -844C/T polymorphism in the Fas ligand promoter associates with Taiwanese SLE.	0.137631247	2005	FASLG	1	172658358	C	T
rs763361	21765104	83648	FAM167A	umls:C0024141	BeFree	We replicated the genetic association with rs13277113 (p = 0.0009, OR 1.46) and rs2736340 (p = 0.0001, OR 1.63) from C8orf13-BLK (8p23.1, associated with RA and systemic lupus erythematosus), and rs763361 (p = 0.03) from CD226 (18q22.3, associated with multiple sclerosis and type 1 diabetes) in the Colombian population.	0.018740759	2011	CD226	18	69864406	T	A,C
rs763361	22941566	10666	CD226	umls:C0024141	BeFree	This meta-analysis demonstrates the CD226 rs763361 polymorphism confers susceptibility to autoimmune disease in Europeans, South Americans and Asians, and in particular, shows that the CD226 rs763361 polymorphism is associated with SLE, SSc and T1D.	0.006448592	2012	CD226	18	69864406	T	A,C
rs763361	21765104	10666	CD226	umls:C0024141	BeFree	We replicated the genetic association with rs13277113 (p = 0.0009, OR 1.46) and rs2736340 (p = 0.0001, OR 1.63) from C8orf13-BLK (8p23.1, associated with RA and systemic lupus erythematosus), and rs763361 (p = 0.03) from CD226 (18q22.3, associated with multiple sclerosis and type 1 diabetes) in the Colombian population.	0.006448592	2011	CD226	18	69864406	T	A,C
rs763361	21765104	640	BLK	umls:C0024141	BeFree	We replicated the genetic association with rs13277113 (p = 0.0009, OR 1.46) and rs2736340 (p = 0.0001, OR 1.63) from C8orf13-BLK (8p23.1, associated with RA and systemic lupus erythematosus), and rs763361 (p = 0.03) from CD226 (18q22.3, associated with multiple sclerosis and type 1 diabetes) in the Colombian population.	0.272823399	2011	CD226	18	69864406	T	A,C
rs7750641	18204098	6941	TCF19	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.007101096	2008	TCF19	6	31161533	C	T
rs7750641	NA	6941	TCF19	umls:C0024141	GAD	NA	0.007101096	NA	TCF19	6	31161533	C	T
rs7769979	19851445	1388	ATF6B	umls:C0024141	BeFree	Sequential removal of SLE-associated DRB1 haplotypes revealed independent effects due to variation within OR2H2 (extended class I, rs362521, p = 0.006), CREBL1 (class III, rs8283, p = 0.01), and DQB2 (class II, rs7769979, p = 0.003, and rs10947345, p = 0.0004).	0.002638474	2009	HLA-DQB2	6	32755795	G	A
rs7769979	19851445	129831	RBM45	umls:C0024141	BeFree	Sequential removal of SLE-associated DRB1 haplotypes revealed independent effects due to variation within OR2H2 (extended class I, rs362521, p = 0.006), CREBL1 (class III, rs8283, p = 0.01), and DQB2 (class II, rs7769979, p = 0.003, and rs10947345, p = 0.0004).	0.010043349	2009	HLA-DQB2	6	32755795	G	A
rs7769979	19851445	7932	OR2H2	umls:C0024141	BeFree	Sequential removal of SLE-associated DRB1 haplotypes revealed independent effects due to variation within OR2H2 (extended class I, rs362521, p = 0.006), CREBL1 (class III, rs8283, p = 0.01), and DQB2 (class II, rs7769979, p = 0.003, and rs10947345, p = 0.0004).	0.002638474	2009	HLA-DQB2	6	32755795	G	A
rs7775397	18204098	10665	C6orf10	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.009468128	2008	C6orf10;LOC101929163;LOC105379622;LOC105379643	6	32293475	T	G
rs7812879	19838193	83648	FAM167A	umls:C0024141	GAD	[Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.]	0.018740759	2009	NA	8	11482672	T	C
rs7927370	21408207	81328	OR4A15	umls:C0024141	GAD	[Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.]	0.002367032	2011	OR4A15	11	55368743	C	T
rs80077409	25416694	4313	MMP2	umls:C0024141	BeFree	This study for the first time not only suggests that MMP-9 -C1562 T and MMP-2 -G1575A alleles synergistically increase the risk of SLE but also high serum levels of MDA, neopterin, and circulatory levels of MMP-2 and lower MMP-9 in SLE patients.	0.000542884	2014	MMP9	20	46013499	G	A
rs805294	NA	80740	LY6G6C	umls:C0024141	GAD	NA	0.004734064	NA	C6orf25;LY6G6C	6	31720440	A	G
rs8192591	23084292	3118	HLA-DQA2	umls:C0024141	BeFree	Our results from conditional analysis and model choice with the use of the Bayesian information criterion show that the best model for SLE association includes both classical loci (HLA-DRB1(∗)03:01, HLA-DRB1(∗)08:01, and HLA-DQA1(∗)01:02) and two SNPs, rs8192591 (in class III and upstream of NOTCH4) and rs2246618 (MICB in class I).	0.003995683	2012	NOTCH4	6	32218019	C	T
rs8192591	23084292	4277	MICB	umls:C0024141	BeFree	Our results from conditional analysis and model choice with the use of the Bayesian information criterion show that the best model for SLE association includes both classical loci (HLA-DRB1(∗)03:01, HLA-DRB1(∗)08:01, and HLA-DQA1(∗)01:02) and two SNPs, rs8192591 (in class III and upstream of NOTCH4) and rs2246618 (MICB in class I).	0.005005506	2012	NOTCH4	6	32218019	C	T
rs8192591	23084292	4855	NOTCH4	umls:C0024141	BeFree	Our results from conditional analysis and model choice with the use of the Bayesian information criterion show that the best model for SLE association includes both classical loci (HLA-DRB1(∗)03:01, HLA-DRB1(∗)08:01, and HLA-DQA1(∗)01:02) and two SNPs, rs8192591 (in class III and upstream of NOTCH4) and rs2246618 (MICB in class I).	0.00973957	2012	NOTCH4	6	32218019	C	T
rs8283	19851445	129831	RBM45	umls:C0024141	BeFree	Sequential removal of SLE-associated DRB1 haplotypes revealed independent effects due to variation within OR2H2 (extended class I, rs362521, p = 0.006), CREBL1 (class III, rs8283, p = 0.01), and DQB2 (class II, rs7769979, p = 0.003, and rs10947345, p = 0.0004).	0.010043349	2009	ATF6B	6	32115523	A	G
rs8283	19851445	7932	OR2H2	umls:C0024141	BeFree	Sequential removal of SLE-associated DRB1 haplotypes revealed independent effects due to variation within OR2H2 (extended class I, rs362521, p = 0.006), CREBL1 (class III, rs8283, p = 0.01), and DQB2 (class II, rs7769979, p = 0.003, and rs10947345, p = 0.0004).	0.002638474	2009	ATF6B	6	32115523	A	G
rs8283	19851445	1388	ATF6B	umls:C0024141	BeFree	Sequential removal of SLE-associated DRB1 haplotypes revealed independent effects due to variation within OR2H2 (extended class I, rs362521, p = 0.006), CREBL1 (class III, rs8283, p = 0.01), and DQB2 (class II, rs7769979, p = 0.003, and rs10947345, p = 0.0004).	0.002638474	2009	ATF6B	6	32115523	A	G
rs8321	NA	30834	ZNRD1	umls:C0024141	GAD	NA	0.004734064	NA	ZNRD1	6	30064745	A	C
rs853676	NA	64288	ZSCAN31	umls:C0024141	GAD	NA	0.004734064	NA	ZSCAN31	6	28331910	C	T
rs853676	18204098	64288	ZSCAN31	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.004734064	2008	ZSCAN31	6	28331910	C	T
rs853679	18204098	64288	ZSCAN31	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.004734064	2008	ZSCAN31	6	28329086	C	A
rs861539	24395651	7517	XRCC3	umls:C0024141	BeFree	Association between XRCC3 Thr241Met SNP and systemic lupus erythematosus in Han Chinese patients in Taiwan, and a meta-analysis of healthy populations.	0.002909916	2013	KLC1;XRCC3	14	103699416	G	A
rs861539	18852222	7515	XRCC1	umls:C0024141	BeFree	In the present study, we aimed to investigate: (a) the efficiency of SLE peripheral blood leucocytes in repairing DNA damage induced by ionizing radiation and (b) the association of DNA repair gene (XRCC1 Arg399Gln, XRCC3 Thr241Met and XRCC4 Ile401Thr) polymorphisms in SLE patients, considering the whole group, or stratified sub-groups according to clinical and laboratory features.	0.005819831	2008	KLC1;XRCC3	14	103699416	G	A
rs861539	18852222	7517	XRCC3	umls:C0024141	GAD	[Efficiency of the DNA repair and polymorphisms of the XRCC1, XRCC3 and XRCC4 DNA repair genes in systemic lupus erythematosus.]	0.002909916	2008	KLC1;XRCC3	14	103699416	G	A
rs8734	20230526	100133941	CD24	umls:C0024141	BeFree	CD24 Ala57Val gene polymorphism and the risk of systemic lupus erythematosus.	0.011268532	2010	NA	NA	NA	NA	NA
rs8734	25830931	100133941	CD24	umls:C0024141	BeFree	Association between the CD24 Ala57Val polymorphism and risk for multiple sclerosis and systemic lupus erythematosus: a meta-analysis.	0.011268532	2015	NA	NA	NA	NA	NA
rs877819	23273568	57705	WDFY4	umls:C0024141	GWASCAT	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	0.128186863	2013	WDFY4;LOC105378299	10	48834906	A	G
rs886403	NA	394263	MUC21	umls:C0024141	GAD	NA	0.004734064	NA	NA	6	30989841	T	C
rs886424	18204098	8870	IER3	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.007372538	2008	LINC00243	6	30814225	C	T
rs907715	20881011	59067	IL21	umls:C0024141	GAD	[The genetic contribution towards predicting early-onset disease in patients with SLE is quantified for the first time. A more severe SLE phenotype is found in patients with early-onset disease in a large multi-racial cohort, independent of gender, race an]	0.135439849	2011	IL21	4	122613898	C	T
rs918959	21408207	57703	CWC22	umls:C0024141	GAD	[Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.]	0.002367032	2011	NA	2	180649002	G	A
rs919581	21437871	3301	DNAJA1	umls:C0024141	BeFree	Association with SLE was confirmed for several genes, including those for the transmembrane receptor CD44 (CD44 [rs507230]; P = 3.98 × 10⁻¹²), the cytokine pleiotrophin (PTN [rs919581]; P = 5.38 × 10⁻⁴), the heat-shock protein DnaJ (DNAJA1 [rs10971259]; P = 6.31 × 10⁻³), and the nuclear import protein karyopherin α1 (KPNA [rs6810306]; P = 4.91 × 10⁻²).	0.000271442	2011	PTN	7	137295427	A	G
rs919581	21437871	5764	PTN	umls:C0024141	BeFree	Association with SLE was confirmed for several genes, including those for the transmembrane receptor CD44 (CD44 [rs507230]; P = 3.98 × 10⁻¹²), the cytokine pleiotrophin (PTN [rs919581]; P = 5.38 × 10⁻⁴), the heat-shock protein DnaJ (DNAJA1 [rs10971259]; P = 6.31 × 10⁻³), and the nuclear import protein karyopherin α1 (KPNA [rs6810306]; P = 4.91 × 10⁻²).	0.000271442	2011	PTN	7	137295427	A	G
rs9261290	NA	80352	RNF39	umls:C0024141	GAD	NA	0.004734064	NA	RNF39	6	30070870	T	C
rs9268530	18204098	56244	BTNL2	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.010096888	2008	NA	6	32415446	T	C
rs9271366	23257407	3123	HLA-DRB1	umls:C0024141	BeFree	The minor allele G and its homozygous genotype GG of HLA-DRB1/HLA-DQA1 rs9271366 significantly increased the SLE susceptibility in Malaysian patients, including those of Malay and Chinese ethnicity (odds ratio (OR) > 1, p < 0.05).	0.235879985	2013	NA	6	32619077	G	A
rs9271366	21695597	3123	HLA-DRB1	umls:C0024141	BeFree	The most strongly associated SNP with SLE was the rs9271366 (odds ratio, OR = 1.70, p = 5.6 × 10(-5)) near the HLA-DRB1 gene.	0.235879985	2011	NA	6	32619077	G	A
rs9275224	18204098	3119	HLA-DQB1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.042830529	2008	NA	6	32692101	A	G
rs9275328	23257407	3118	HLA-DQA2	umls:C0024141	BeFree	As for HLA-DQB1/HLA-DQA2 rs9275328, the minor allele T and the heterozygous genotype CT conferred protective effect to SLE in Malaysians, as well as in Malays and Chinese, by having OR < 1 and p value <0.05.	0.003995683	2013	NA	6	32699045	C	T
rs9275328	23257407	3119	HLA-DQB1	umls:C0024141	BeFree	As for HLA-DQB1/HLA-DQA2 rs9275328, the minor allele T and the heterozygous genotype CT conferred protective effect to SLE in Malaysians, as well as in Malays and Chinese, by having OR < 1 and p value <0.05.	0.042830529	2013	NA	6	32699045	C	T
rs9275428	23740238	3119	HLA-DQB1	umls:C0024141	BeFree	In the GWAS phase, rs9275428 located near HLA-DQB1 showed the strongest association with SLE (OR 0.50, false discovery rate (FDR) p=3.07×10(-6)).	0.042830529	2014	NA	6	32703201	A	G
rs9275572	18204098	3119	HLA-DQB1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.042830529	2008	NA	6	32711222	A	G
rs9275596	18204098	3119	HLA-DQB1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.042830529	2008	NA	6	32713854	C	T
rs9275659	18204098	3119	HLA-DQB1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.042830529	2008	LOC102725019	6	32718326	C	A,G,T
rs9275686	18204098	3119	HLA-DQB1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.042830529	2008	NA	6	32719793	G	A
rs9357152	18204098	3119	HLA-DQB1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.042830529	2008	NA	6	32697183	A	G
rs9358946	18204098	11120	BTN2A1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.004734064	2008	LOC285819	6	26478699	G	A
rs9379858	18204098	11118	BTN3A2	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.002367032	2008	BTN3A2	6	26367461	T	C
rs9379859	18204098	11118	BTN3A2	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.002367032	2008	BTN3A2	6	26369321	C	T
rs9379897	18204098	29777	ABT1	umls:C0024141	GAD	[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.]	0.002367032	2008	LOC105374989	6	26601298	T	C
rs956237	22291604	51176	LEF1	umls:C0024141	GAD	[A genome-wide association study identified AFF1 as a susceptibility locus for systemic lupus eyrthematosus in Japanese.]	0.002367032	2012	LEF1	4	108125804	G	A
rs960709	23740937	10318	TNIP1	umls:C0024141	GWASCAT	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	0.249544073	2014	TNIP1	5	151081488	A	G
rs979233	18204098	2690	GHR	umls:C0024141	GAD	[Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.]	0.002367032	2008	LOC102723768	5	42375141	A	T,C
rs9888739	21408207	3684	ITGAM	umls:C0024141	GAD	[SNPs in the previously identified SLE susceptibility loci STAT4, IRF5, ITGAM, and the major histocompatibility complex were strongly associated with anti-dsDNA + SLE.]	0.278729106	2011	ITGAM	16	31301932	C	T
rs9888739	18204446	3684	ITGAM	umls:C0024141	GAD	[Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.]	0.278729106	2008	ITGAM	16	31301932	C	T
rs9888739	21408207	3684	ITGAM	umls:C0024141	GWASCAT	SNPs in the previously identified SLE susceptibility loci STAT4, IRF5, ITGAM, and the major histocompatibility complex were strongly associated with anti-dsDNA + SLE.	0.278729106	2011	ITGAM	16	31301932	C	T
rs9888739	24871463	3684	ITGAM	umls:C0024141	GWASCAT	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	0.278729106	2014	ITGAM	16	31301932	C	T
rs9888739	18204446	3684	ITGAM	umls:C0024141	GWASCAT	Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.	0.278729106	2008	ITGAM	16	31301932	C	T

GWASdb Annotation(Total Genotypes:0)
(Waiting for update.)

GWASdb Snp Trait(Total Genotypes:1244)
CHR	POS	SNPID	REF	ALT	ORI_SNPID	PMID	P_VALUE	P_VALUE_TEXT	OR/BETA	CI95_TEXT	GWAS_INITIAL_SAMPLE_SIZE	SUB_POPULATION	SUPER_POPULATION	GWAS_TRAIT	HPO_ID	HPO_TERM	DO_ID	DO_TERM	MESH_ID	MESH_TERM	EFO_ID	EFO_TERM	DOLITE_TERM	RISK_ALLELE	PUBLICATION_TYPE	AA	GENE_SYMBOL	TYPE	REFGENE
1	31471702	rs7536851	A	C	rs7536851	pha002867	2.29E-05	phs000202	phs000216	1.69	[1.33-2.17]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	A	PUM1	intron
1	31490614	rs10753241	A	G	rs10753241	pha002867	2.20E-05	phs000202	phs000216	1.69	[1.33-2.17]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	A	PUM1	intron
1	31494475	rs10753242	T	G	rs10753242	pha002867	2.16E-05	phs000202	phs000216	1.69	[1.33-2.17]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	PUM1	intron
1	31539051	rs7526662	A	G	rs7526662	pha002867	1.86E-05	phs000202	phs000216	1.69	[1.33-2.17]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	A	NA	NA
1	35908451	rs2275247	T	C	rs2275247	23740937	1.00E-10	lcSSc	1.51	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
1	42056194	rs943374	A	G	rs943374	24925725	4.78E-05	(Additive)	1.37	[1.59-1.59]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
1	42077958	rs11210498	T	G	rs11210498	24925725	7.58E-05	(Dominant)	1.64	[2.08-2.08]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
1	42083369	rs7519983	G	A	rs7519983	24925725	6.75E-05	(Dominant)	1.64	[2.08-2.08]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
1	42091634	rs11210501	T	C	rs11210501	24925725	7.28E-05	(Additive)	1.35	[1.56-1.56]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
1	42093015	rs752010	C	T	rs752010	24925725	2.00E-06	(Dominant)	1.75	[1.41-2.22]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
1	42093340	rs2077172	A	G	rs2077172	24925725	2.31E-06	(Dominant)	1.75	[2.22-2.22]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
1	42093821	rs6664724	G	A	rs6664724	24925725	4.27E-06	(Dominant)	1.75	[2.22-2.22]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
1	42094719	rs2038978	A	G	rs2038978	24925725	2.65E-06	(Dominant)	1.75	[2.22-2.22]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
1	42098321	rs6681441	G	A	rs6681441	24925725	1.90E-05	(Dominant)	1.69	[2.13-2.13]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
1	42099583	rs4083593	A	G	rs4083593	24925725	6.77E-06	(Dominant)	1.72	[2.17-2.17]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
1	42101134	rs11210503	A	G	rs11210503	24925725	2.26E-05	(Dominant)	1.69	[2.13-2.13]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
1	42101843	rs10890151	C	A	rs10890151	24925725	6.92E-05	(Dominant)	1.67	[2.13-2.13]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
1	42101962	rs10789405	C	T	rs10789405	24925725	2.13E-05	(Dominant)	1.69	[2.13-2.13]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
1	44438974	rs7161	C	T	rs7161	23740937	2.75E-06	NA	1.27	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
1	53629585	rs6695567	G	A	rs6695567	21408207	4.00E-06	NA	1.32	[1.18-1.47]	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
1	66517050	rs12040042	A	G	rs12040042	23740937	3.46E-06	NA	1.73	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
1	67814440	rs3790566	T	C	rs3790566	23740937	8.24E-08	NA	1.21	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
1	67822377	rs3790567	A	G	rs3790567	23740937	2.45E-05	NA	1.16	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
1	72274473	rs12141391	C	A	rs12141391	18204098	7.00E-06	NA	NA	NA	1,311 cases; 3,340 controls	NOPOP(4651)	ALL(4651)	NOPOP(4651)	ALL(4651)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs12141391-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
1	86938706	rs2791516	C	T	rs2791516	23740937	1.05E-06	NA	1.22	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
1	91529589	rs469846	G	A	rs469846	pha002867	3.43E-05	phs000202	phs000216	2.69	[1.68-4.30]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	T	NA	NA
1	114330202	rs2797409	T	C	rs2797409	23740937	2.81E-04	NA	1.17	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
1	114377568	rs2476601	A	G	rs2476601	18204446	5.20E-06	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
1	161472158	rs10800309	A	G	rs10800309	18204446	7.00E-04	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
1	161479745	rs1801274	A	G	rs1801274	18204446	6.78E-07	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
1	161479745	rs1801274	A	G	rs1801274	23740937	5.02E-04	NA	1.11	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
1	161479745	rs1801274	A	G	rs1801274	24871463	9.00E-06	NA	NA	NA	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
1	166944928	rs393025	C	A	rs393025	24925725	1.32E-05	(Recessive)	1.85	[2.44-2.44]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
1	166950458	rs402031	A	G	rs402031	24925725	1.18E-05	(Recessive)	1.85	[2.50-2.50]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
1	167467298	rs858543	A	G	rs858543	22004975	8.37E-04	Systemic lupus erythematosus (SLE)	NA	NA	612 Chinese cases; 2193 Chinese controls	Chinese(2805)	ALL(2805)	ASN(2805)	ALL(2805)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	C	CD247
1	167467298	rs858543	A	G	rs858543	23273568	4.00E-04	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	C
1	167468864	rs704853	G	T	rs704853	22004975	2.47E-07	Systemic lupus erythematosus (SLE)	NA	NA	612 Chinese cases; 2193 Chinese controls	Chinese(2805)	ALL(2805)	ASN(2805)	ALL(2805)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	A	CD247
1	167468864	rs704853	G	T	rs704853	23273568	1.79E-04	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	A
1	167563012	rs6666091	T	C	rs6666091	23740937	1.94E-04	NA	1.14	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
1	173191475	rs2205960	G	T	rs2205960	19838193	3.00E-32	NA	1.46	[1.37-1.56]	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2205960-A	Research Support, Non-U.S. Gov't	G	NA
1	173191475	rs2205960	G	T	rs2205960	23273568	3.00E-12	NA	1.36	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2205960-T	Meta-Analysis	Research Support, Non-U.S. Gov't	G
1	173191475	rs2205960	G	T	rs2205960	24925725	7.82E-05	(Recessive)	2.41	[1.59-3.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2205960-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
1	173219471	rs1012507	G	T	rs1012507	23273568	1.60E-10	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	T
1	173223863	rs844648	G	A	rs844648	23273568	7.90E-08	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	A
1	173226195	rs704840	T	G	rs704840	23273568	1.90E-10	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	G
1	173226195	rs704840	T	G	rs704840	23740937	4.00E-07	NA	1.18	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
1	173236065	rs10489265	A	C	rs10489265	23273568	7.60E-12	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	T
1	173309713	rs10798269	A	G	rs10798269	18204446	1.00E-07	NA	1.22	[1.14-1.32]	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
1	173332629	rs1857066	A	C	rs1857066	23740937	2.32E-09	NA	1.32	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
1	183116531	rs12565776	A	G	rs12565776	24871463	5.00E-06	NA	NA	NA	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs12565776	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
1	183176430	rs525410	A	G	rs525410	21408207	6.00E-07	NA	1.33	[1.19-1.47]	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
1	183180260	rs16860537	A	G	rs16860537	23740937	5.00E-06	ACA	1.5	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
1	183353853	rs2022013	C	T	rs2022013	18204446	1.08E-07	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
1	183596703	rs2231241	G	A	rs2231241	23273568	8.80E-05	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	C
1	183604258	rs11811536	C	A	rs11811536	23273568	1.10E-04	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	A
1	183616884	rs10911390	C	T	rs10911390	23273568	6.00E-06	NA	1.13	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs10911390-T	Meta-Analysis	Research Support, Non-U.S. Gov't	C
1	184649503	rs10911628	C	A	rs10911628	24871463	2.00E-13	NA	1.95	[1.77-2.16]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs10911628-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
1	189723623	rs10737562	A	G	rs10737562	21408207	7.00E-06	NA	1.3	[1.16-1.45]	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
1	197268763	rs482526	A	C	rs482526	24925725	5.07E-05	(Recessive)	1.98	[1.44-2.73]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs482526-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
1	197280295	rs664767	A	C	rs664767	24925725	5.07E-05	(Recessive)	1.98	[1.44-2.73]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs664767-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
1	197283185	rs1415214	C	T	rs1415214	24925725	5.92E-05	(Recessive)	1.97	[1.43-2.72]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs1415214-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
1	197288308	rs1764623	G	T	rs1764623	24925725	4.64E-05	(Recessive)	1.99	[1.44-2.74]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs1764623-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
1	197297408	rs550098	A	G	rs550098	24925725	2.87E-05	(Recessive)	2.07	[1.48-2.88]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs550098-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
1	197298373	rs580067	T	C	rs580067	24925725	2.77E-05	(Recessive)	2.07	[1.48-2.88]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs580067-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
1	197299315	rs1615444	C	T	rs1615444	24925725	2.72E-05	(Recessive)	2.07	[1.48-2.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs1615444-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
1	197300496	rs1764786	A	G	rs1764786	24925725	2.65E-05	(Recessive)	2.07	[1.48-2.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs1764786-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
1	197302402	rs2821131	T	G	rs2821131	24925725	1.99E-05	(Recessive)	2.09	[1.50-2.91]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2821131-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
1	197302690	rs2786115	A	G	rs2786115	24925725	7.07E-06	(Recessive)	2.25	[1.59-3.18]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2786115-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
1	197304081	rs2786113	T	G	rs2786113	24925725	1.87E-05	(Recessive)	2.09	[1.50-2.91]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2786113-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
1	197306099	rs2786111	C	T	rs2786111	24925725	5.00E-06	(Recessive)	2.26	[1.60-3.19]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2786111-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
1	239720458	rs12406060	T	C	rs12406060	24925725	7.87E-05	(Dominant)	1.52	[1.89-1.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
1	239726247	rs1984207	A	G	rs1984207	24925725	7.85E-05	(Dominant)	1.52	[1.92-1.92]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
2	33701890	rs13385731	T	C	rs13385731	19838193	1.00E-15	NA	1.43	[1.32-1.56]	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs13385731-A	Research Support, Non-U.S. Gov't	T	RASGRP3
2	33701890	rs13385731	T	C	rs13385731	23273568	4.00E-06	NA	1.39	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs13385731-A	Meta-Analysis	Research Support, Non-U.S. Gov't	T
2	38298139	rs1800440	T	C	rs1800440	pha002867	1.30E-05	phs000202	phs000216	1.79	[1.38-2.32]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	A	CYP1B1	missense
2	47290570	rs4953456	T	C	rs4953456	23740937	2.91E-06	NA	1.34	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
2	49955497	rs17039212	C	A	rs17039212	19165918	9.00E-06	NA	NA	NA	431 cases; 2,155 controls	NOPOP(2586)	ALL(2586)	NOPOP(2586)	ALL(2586)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
2	53788277	rs10460550	T	C	rs10460550	24925725	2.86E-05	(Additive)	1.56	[1.92-1.92]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
2	53791087	rs718349	G	T	rs718349	24925725	3.33E-05	(Additive)	1.49	[1.79-1.79]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
2	53796167	rs7566120	G	A	rs7566120	24925725	2.92E-05	(Additive)	1.49	[1.75-1.75]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
2	57848179	rs10496070	A	T	rs10496070	23740937	3.73E-06	NA	1.2	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
2	74202578	rs4852324	T	C	rs4852324	23273568	6.00E-14	NA	1.27	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs4852324-T	Meta-Analysis	Research Support, Non-U.S. Gov't	T
2	74208362	rs6705628	C	T	rs6705628	23273568	7.00E-17	NA	1.33	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs6705628-C	Meta-Analysis	Research Support, Non-U.S. Gov't	C
2	96980113	rs4907310	C	T	rs4907310	23740937	7.73E-04	dcSSc	1.1	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
2	127758448	rs12993006	C	T	rs12993006	24871463	4.00E-06	NA	1.45	[1.35-1.56]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs12993006-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
2	156256701	rs4544377	G	A	rs4544377	24871463	2.00E-06	NA	1.83	[1.62-2.07]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs4544377-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
2	170354790	rs12619026	A	G	rs12619026	23740937	1.69E-06	NA	1.28	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
2	181513729	rs918959	G	A	rs918959	21408207	2.00E-06	NA	1.72	[1.39-2.17]	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
2	183906786	rs1022337	T	C	rs1022337	24925725	6.94E-05	(Additive)	1.45	[1.20-1.74]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs1022337-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
2	188594997	rs11675507	A	G	rs11675507	24925725	4.81E-05	(Dominant)	1.59	[1.96-1.96]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
2	188600305	rs2349872	G	A	rs2349872	24925725	3.06E-05	(Dominant)	1.61	[1.96-1.96]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
2	188601710	rs1402145	A	C	rs1402145	24925725	3.49E-05	(Additive)	1.52	[1.82-1.82]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
2	188607403	rs1402144	A	G	rs1402144	24925725	3.64E-05	(Dominant)	1.59	[1.96-1.96]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
2	188609736	rs9288147	A	G	rs9288147	24925725	4.00E-05	(Dominant)	1.61	NA	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
2	188611039	rs1520477	T	C	rs1520477	24925725	3.94E-05	(Additive)	1.52	[1.82-1.82]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
2	188616978	rs4667192	T	C	rs4667192	24925725	3.43E-05	(Dominant)	1.59	[1.96-1.96]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
2	188618150	rs13032640	G	A	rs13032640	24925725	3.33E-05	(Dominant)	1.59	[1.96-1.96]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
2	188620681	rs6748449	C	T	rs6748449	24925725	3.13E-05	(Additive)	1.52	[1.82-1.82]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
2	188623152	rs6715141	T	C	rs6715141	24925725	2.70E-05	(Additive)	1.52	[1.82-1.82]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
2	191902758	rs3821236	G	A	rs3821236	19165918	8.00E-11	NA	1.49	NA	431 cases; 2,155 controls	NOPOP(2586)	ALL(2586)	NOPOP(2586)	ALL(2586)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
2	191902758	rs3821236	G	A	rs3821236	21408207	5.20E-13	NA	NA	NA	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
2	191931464	rs1517352	A	C	rs1517352	21408207	5.90E-07	NA	NA	NA	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
2	191935804	rs10168266	C	T	rs10168266	23273568	2.30E-20	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	C
2	191938600	rs7594501	G	A	rs7594501	23273568	1.60E-09	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	G
2	191940260	rs16833239	G	A	rs16833239	23273568	1.20E-09	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	G
2	191940451	rs7601754	G	A	rs7601754	18204446	3.70E-06	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
2	191940451	rs7601754	G	A	rs7601754	19838193	6.70E-05	NA	NA	NA	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	G	STAT4
2	191940451	rs7601754	G	A	rs7601754	21408207	2.30E-06	NA	NA	NA	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
2	191940451	rs7601754	G	A	rs7601754	23273568	6.80E-10	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	G
2	191940451	rs7601754	G	A	rs7601754	23740937	3.00E-11	NA	1.32	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
2	191954852	rs10931481	G	A	rs10931481	21408207	8.10E-10	NA	NA	NA	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
2	191964633	rs7574865	T	G	rs7574865	18204098	9.00E-14	NA	NA	NA	1,311 cases; 3,340 controls	NOPOP(4651)	ALL(4651)	NOPOP(4651)	ALL(4651)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7574865-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
2	191964633	rs7574865	T	G	rs7574865	18204446	2.80E-09	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
2	191964633	rs7574865	T	G	rs7574865	19838193	5.00E-42	NA	1.51	[1.43-1.61]	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7574865-A	Research Support, Non-U.S. Gov't	T	STAT4
2	191964633	rs7574865	T	G	rs7574865	21408207	2.00E-20	NA	1.77	[1.57-1.99]	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7574865-T	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
2	191964633	rs7574865	T	G	rs7574865	21408207	8.00E-06	case-only	1.41	[1.21-1.63]	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7574865-T	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
2	191964633	rs7574865	T	G	rs7574865	23053960	4.00E-14	NA	1.48	[1.34-1.63]	1,527 European ancestry cases; 3,421 European ancestry controls	European(4948)	ALL(4948)	EUR(4948)	ALL(4948)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7574865-T	Meta-Analysis	Research Support, Non-U.S. Gov't	T
2	191964633	rs7574865	T	G	rs7574865	23273568	1.00E-21	NA	1.63	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7574865-T	Meta-Analysis	Research Support, Non-U.S. Gov't	T
2	191964633	rs7574865	T	G	rs7574865	24871463	5.00E-09	NA	1.51	[1.41-1.62]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7574865-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
2	197863851	rs4850742	C	T	rs4850742	23740937	4.29E-06	NA	1.38	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
2	220698125	rs10498070	A	C	rs10498070	23740937	2.00E-07	lcSSc	1.16	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
2	233893807	rs6437086	A	G	rs6437086	17911428	2.00E-05	NA	NA	NA	51 cases; 114 controls	NOPOP(165)	ALL(165)	NOPOP(165)	ALL(165)	Lupus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	NA	A	NA
2	238792133	rs6728476	A	G	rs6728476	23740937	1.54E-06	NA	1.25	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
3	1632353	rs4684256	C	T	rs4684256	24871463	1.00E-07	NA	1.48	[1.38-1.58]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs4684256-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
3	4742251	rs6762558	A	G	rs6762558	23740937	4.94E-06	NA	1.23	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
3	5055578	rs2616521	T	C	rs2616521	pha002867	3.49E-05	phs000202	phs000216	2.17	[1.49-3.13]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	NA	NA
3	20465208	rs6793327	T	A	rs6793327	23740937	3.06E-06	NA	1.23	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
3	38843647	rs11717455	T	C	rs11717455	23273568	7.00E-06	NA	1.41	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs11717455-T	Meta-Analysis	Research Support, Non-U.S. Gov't	T
3	58331186	rs2176082	G	A	rs2176082	23740937	5.00E-11	ACA	1.21	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
3	58370177	rs6445975	G	T	rs6445975	18204446	7.00E-09	NA	1.25	[1.16-1.35]	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs6445975-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
3	99340297	rs16841441	G	A	rs16841441	17911428	7.00E-05	NA	NA	NA	51 cases; 114 controls	NOPOP(165)	ALL(165)	NOPOP(165)	ALL(165)	Lupus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	NA	G	NA
3	118917422	rs13315549	G	A	rs13315549	23740937	2.67E-06	NA	1.46	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
3	119150836	rs1132200	C	T	rs1132200	23740937	2.52E-04	NA	1.17	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
3	119260944	rs6804441	A	G	rs6804441	23273568	3.00E-16	NA	1.27	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs6804441-A	Meta-Analysis	Research Support, Non-U.S. Gov't	A
3	149814751	rs4681569	C	G	rs4681569	23740937	2.15E-06	NA	1.22	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
3	174961387	rs1463525	T	C	rs1463525	21408207	8.00E-06	case-only	1.37	[1.19-1.59]	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
3	177095072	rs12629106	C	T	rs12629106	21408207	4.00E-06	case-only	1.56	[1.30-1.89]	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
3	181969352	rs377443148	G	GA	rs6791663	pha002867	3.29E-05	phs000202	phs000216	1.64	[1.30-2.08]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	NA	NA
3	181969352	rs559996376	G	GA	rs6791663	pha002867	3.29E-05	phs000202	phs000216	1.64	[1.30-2.08]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	NA	NA
3	181969352	rs6791663	G	A	rs6791663	pha002867	3.29E-05	phs000202	phs000216	1.64	[1.30-2.08]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	NA	NA
4	3026173	rs2471327	G	A	rs2471327	23740937	2.00E-06	NA	1.18	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
4	7280324	rs6814708	T	C	rs6814708	23740937	1.81E-05	ACA	1.12	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
4	13010092	rs2056117	C	T	rs2056117	24925725	3.79E-05	(Additive)	1.35	[1.59-1.59]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
4	23757800	rs13138252	G	A	rs13138252	17911428	4.00E-05	NA	NA	NA	51 cases; 114 controls	NOPOP(165)	ALL(165)	NOPOP(165)	ALL(165)	Lupus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	NA	G	NA
4	26072751	rs4692059	T	C	rs4692059	24925725	7.79E-05	(Additive)	1.39	[1.59-1.59]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
4	27525947	rs1502251	T	G	rs1502251	24925725	6.10E-05	(Recessive)	2.81	[1.68-4.68]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs1502251-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
4	27528524	rs16879459	A	G	rs16879459	24925725	6.60E-05	(Recessive)	2.8	[1.68-4.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs16879459-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
4	27530694	rs1993402	A	C	rs1993402	24925725	7.00E-05	(Recessive)	2.79	[1.67-4.65]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs1993402-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
4	27533346	rs10939164	T	G	rs10939164	24925725	7.23E-05	(Recessive)	2.78	[1.67-4.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs10939164-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	NA
4	54971211	rs12500475	A	G	rs12500475	24925725	2.64E-06	(Recessive)	2.94	[1.86-4.66]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs12500475-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
4	55011123	rs1017280	C	T	rs1017280	24925725	1.24E-06	(Recessive)	3.23	[1.99-5.22]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs1017280-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
4	55011769	rs1364989	T	C	rs1364989	24925725	5.00E-07	(Recessive)	3.41	[2.10-5.54]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs1364989-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
4	55016819	rs12507253	C	T	rs12507253	24925725	1.63E-06	(Recessive)	3.13	[1.95-5.03]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs12507253-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
4	55045716	rs10027676	T	C	rs10027676	24925725	3.91E-06	(Recessive)	3.08	NA	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs10027676-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
4	87958395	rs340630	G	A	rs340630	22291604	8.00E-09	NA	1.21	[1.14-1.30]	891 Japanese ancestry cases; 3,384 Japanese ancestry controls	Japanese(4275)	ALL(4275)	ASN(4275)	ALL(4275)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs340630-A	Research Support, Non-U.S. Gov't	G	AFF1
4	98652600	rs1947516	T	C	rs1947516	23740937	2.83E-06	NA	1.33	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
4	102715888	rs4522865	G	A	rs4522865	23273568	5.00E-06	NA	1.35	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs4522865-A	Meta-Analysis	Research Support, Non-U.S. Gov't	A
4	102746780	rs4276281	C	A	rs4276281	23273568	1.10E-04	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	A
4	102750922	rs17266594	T	C	rs17266594	18204447	4.74E-11	NA	NA	NA	279 cases; 515 controls	NOPOP(794)	ALL(794)	NOPOP(794)	ALL(794)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	T
4	102751076	rs10516487	G	A	rs10516487	18204447	4.00E-10	NA	1.38	[1.25-1.53]	279 cases; 515 controls	NOPOP(794)	ALL(794)	NOPOP(794)	ALL(794)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs10516487-G	Meta-Analysis	Research Support, Non-U.S. Gov't	C
4	102751076	rs10516487	G	A	rs10516487	23273568	1.20E-04	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	C
4	102751276	rs10516486	C	T	rs10516486	23273568	1.60E-04	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	A
4	102756731	rs13129744	T	C	rs13129744	23273568	3.20E-04	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	T
4	102791905	rs10516483	C	G	rs10516483	18204447	5.62E-04	NA	NA	NA	279 cases; 515 controls	NOPOP(794)	ALL(794)	NOPOP(794)	ALL(794)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	G
4	102793500	rs2216546	G	T	rs2216546	23740937	2.14E-05	NA	1.21	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
4	102839287	rs3733197	G	A	rs3733197	18204447	4.67E-05	NA	NA	NA	279 cases; 515 controls	NOPOP(794)	ALL(794)	NOPOP(794)	ALL(794)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	G
4	109046960	rs956237	G	A	rs956237	22291604	2.00E-06	NA	1.18	[1.10-1.26]	891 Japanese ancestry cases; 3,384 Japanese ancestry controls	Japanese(4275)	ALL(4275)	ASN(4275)	ALL(4275)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs956237-A	Research Support, Non-U.S. Gov't	G	LEF1
4	109723126	rs4956211	G	A	rs4956211	21408207	1.00E-06	NA	1.33	[1.19-1.48]	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs4956211-A	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
4	138692250	rs2313132	G	A	rs2313132	19165918	8.00E-06	NA	NA	NA	431 cases; 2,155 controls	NOPOP(2586)	ALL(2586)	NOPOP(2586)	ALL(2586)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
4	171865495	rs1368005	G	T	rs1368005	24925725	4.10E-05	(Additive)	1.37	[1.61-1.61]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
4	171869645	rs6831331	C	T	rs6831331	24925725	3.52E-05	(Additive)	1.37	[1.59-1.59]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
4	171869735	rs6856523	A	C	rs6856523	24925725	3.52E-05	(Additive)	1.37	[1.59-1.59]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
4	171872498	rs13121066	G	A	rs13121066	24925725	2.67E-05	(Additive)	1.39	[1.61-1.61]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
4	171872654	rs13122956	C	T	rs13122956	24925725	3.50E-05	(Additive)	1.35	[1.59-1.59]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
4	171879302	rs13128132	G	A	rs13128132	24925725	2.67E-05	(Additive)	1.39	[1.61-1.61]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
4	171880122	rs1223314	A	G	rs1223314	24925725	3.47E-05	(Additive)	1.37	[1.59-1.59]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
4	171880580	rs1560560	A	C,G,T	rs1560560	24925725	2.67E-05	(Additive)	1.39	[1.61-1.61]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
4	171881521	rs970432	C	A	rs970432	24925725	3.42E-05	(Additive)	1.35	[1.56-1.56]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
4	171881792	rs970431	C	T	rs970431	24925725	3.40E-05	(Additive)	1.35	[1.56-1.56]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
4	171881872	rs970430	C	A	rs970430	24925725	3.42E-05	(Additive)	1.35	[1.56-1.56]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
4	171882080	rs1236448	C	T	rs1236448	24925725	8.14E-06	(Additive)	1.43	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A,G
4	171883321	rs2567965	T	C	rs2567965	24925725	3.42E-05	(Additive)	1.35	[1.56-1.56]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
4	171884710	rs17245674	G	A	rs17245674	24925725	8.14E-06	(Additive)	1.43	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
4	171885533	rs2567960	T	C	rs2567960	24925725	8.16E-06	(Additive)	1.43	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
4	171886287	rs2567959	A	G	rs2567959	24925725	3.40E-05	(Additive)	1.35	[1.56-1.56]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
4	171888222	rs967616	G	A	rs967616	24925725	2.00E-06	(Additive)	1.45	[1.23-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
4	171889465	rs17186473	C	T	rs17186473	24925725	3.60E-05	(Additive)	1.35	[1.56-1.56]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
4	171889623	rs2567957	G	A	rs2567957	24925725	1.94E-05	(Additive)	1.37	[1.59-1.59]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
4	171889742	rs2567956	C	T	rs2567956	24925725	8.14E-06	(Additive)	1.43	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
4	171890171	rs17186543	C	T	rs17186543	24925725	8.16E-06	(Additive)	1.43	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
4	171890667	rs2661923	C	A	rs2661923	24925725	8.13E-06	(Additive)	1.43	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
4	171890676	rs13139444	G	A	rs13139444	24925725	7.89E-06	(Additive)	1.43	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
4	171893150	rs2567952	C	T	rs2567952	24925725	8.06E-06	(Additive)	1.43	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
4	171893393	rs2661917	C	T	rs2661917	24925725	8.06E-06	(Additive)	1.43	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
4	171897197	rs12331863	G	A	rs12331863	24925725	8.33E-06	(Additive)	1.43	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
4	171905607	rs1396323	G	A	rs1396323	24925725	1.10E-05	(Additive)	1.41	[1.64-1.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
4	171906096	rs7681844	C	A	rs7681844	24925725	1.11E-05	(Additive)	1.41	[1.64-1.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
4	171909506	rs13148831	G	T	rs13148831	24925725	1.13E-05	(Additive)	1.41	[1.64-1.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
4	171911181	rs2332086	G	A	rs2332086	24925725	1.13E-05	(Additive)	1.41	[1.64-1.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
4	171914470	rs7682721	T	G	rs7682721	24925725	1.14E-05	(Additive)	1.41	[1.64-1.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
4	171919389	rs13126363	G	A	rs13126363	24925725	2.24E-05	(Additive)	1.39	[1.64-1.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
4	171921530	rs1546445	A	G	rs1546445	24925725	3.74E-05	(Additive)	1.37	[1.59-1.59]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
4	171926337	rs1605651	A	G	rs1605651	24925725	1.28E-05	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
4	171927813	rs13115632	A	G	rs13115632	24925725	1.28E-05	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
4	171928371	rs11132865	C	A	rs11132865	24925725	1.28E-05	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
4	171929062	rs4692627	T	C	rs4692627	24925725	1.28E-05	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
4	171931201	rs1396325	G	A	rs1396325	24925725	1.28E-05	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
4	171935468	rs6858075	A	G	rs6858075	24925725	1.28E-05	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
4	171936205	rs1508507	A	G	rs1508507	24925725	1.28E-05	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
4	171936344	rs1508508	C	T	rs1508508	24925725	4.18E-05	(Additive)	1.35	[1.56-1.56]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
4	171936831	rs9968437	C	T	rs9968437	24925725	1.27E-05	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
4	171938957	rs25512	G	T	rs25512	24925725	1.28E-05	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
4	171938984	rs25511	T	C	rs25511	24925725	1.27E-05	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
4	171939004	rs25510	A	G	rs25510	24925725	1.28E-05	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
4	171939094	rs12648447	T	C	rs12648447	24925725	1.27E-05	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
4	171939426	rs6849128	A	G	rs6849128	24925725	1.28E-05	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
4	171939600	rs6811103	T	C	rs6811103	24925725	1.17E-05	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
4	171939724	rs6811337	T	C	rs6811337	24925725	8.91E-06	(Additive)	1.43	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
4	171939951	rs6553556	A	G	rs6553556	24925725	1.21E-05	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
4	171940057	rs7673070	C	T	rs7673070	24925725	1.21E-05	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
4	171940284	rs13151801	C	T	rs13151801	24925725	1.21E-05	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
4	171940465	rs10012648	C	A	rs10012648	24925725	1.21E-05	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
4	171940486	rs6812562	A	G	rs6812562	24925725	1.21E-05	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
4	171940502	rs6817733	T	C	rs6817733	24925725	6.75E-05	(Additive)	1.37	[1.61-1.61]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
4	171940605	rs13138342	T	C	rs13138342	24925725	1.21E-05	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
4	171941088	rs11735676	T	C	rs11735676	24925725	1.21E-05	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
4	171943010	rs7340816	A	C	rs7340816	24925725	1.51E-05	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
4	171943217	rs6827582	A	G	rs6827582	24925725	1.17E-05	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
4	171963260	rs17246620	A	G	rs17246620	24925725	9.50E-06	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
4	171969779	rs17187123	G	A	rs17187123	24925725	1.36E-05	(Additive)	1.41	[1.64-1.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
4	171972225	rs17246878	C	T	rs17246878	24925725	1.39E-05	(Additive)	1.41	[1.64-1.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
4	171972374	rs1508296	T	C	rs1508296	24925725	1.49E-05	(Additive)	1.41	[1.64-1.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
4	171974687	rs13110268	A	G	rs13110268	24925725	1.50E-05	(Additive)	1.41	[1.64-1.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
4	171983768	rs13110811	C	T	rs13110811	24925725	4.35E-05	(Additive)	1.41	[1.64-1.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
4	179103301	rs13145748	G	A	rs13145748	24925725	3.84E-05	(Dominant)	1.59	NA	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
4	179104097	rs2219449	A	G	rs2219449	24925725	4.30E-05	(Dominant)	1.59	NA	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
5	11076061	rs10513066	T	C	rs10513066	24925725	7.40E-05	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
5	11106572	rs1018967	G	A	rs1018967	24925725	7.91E-05	(Additive)	1.41	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
5	11158453	rs6892303	C	A	rs6892303	24925725	2.23E-05	(Recessive)	1.85	[2.44-2.44]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
5	11161237	rs2023916	C	T	rs2023916	24925725	2.24E-05	(Recessive)	2.04	[2.78-2.78]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
5	11161625	rs1978156	T	C	rs1978156	24925725	2.33E-05	(Recessive)	2.04	[2.78-2.78]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
5	42375243	rs979233	A	C	rs979233	18204098	4.00E-06		NA	NA	1,311 cases; 3,340 controls	NOPOP(4651)	ALL(4651)	NOPOP(4651)	ALL(4651)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs979233-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
5	57214179	rs1844438	A	G	rs4337811	24925725	3.71E-06	(Recessive)	2.48	[1.70-3.60]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs4337811-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
5	57214817	rs10041935	A	C	rs10041935	24925725	3.00E-06	(Recessive)	2.5	[1.71-3.66]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs10041935-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
5	57311558	rs10472030	C	T	rs10472030	24925725	6.24E-05	(Recessive)	2.17	[1.50-3.14]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs10472030-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
5	89620100	rs2972956	A	G	rs2972956	pha002867	6.07E-06	phs000202	phs000216	2.04	[1.49-2.78]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	C	NA	NA
5	114027841	rs285912	G	C	rs285912	23740937	1.52E-05	ACA	1.14	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
5	150458146	rs10036748	C	T	rs10036748	19838193	2.00E-09	NA	1.23	[1.15-1.33]	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs10036748-A	Research Support, Non-U.S. Gov't	T	TNIP1
5	150458146	rs10036748	C	T	rs10036748	23273568	3.00E-06	NA	1.25	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs10036748-T	Meta-Analysis	Research Support, Non-U.S. Gov't	T
5	150461049	rs960709	A	G	rs960709	23740937	2.00E-08	NA	1.21	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
5	150462638	rs13168551	T	C	rs13168551	23273568	4.00E-06	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	C
5	150485241	rs868641	T	C	rs868641	23273568	1.20E-05	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	G
5	150486991	rs4958893	T	C	rs4958893	23273568	8.90E-06	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	C
5	150487174	rs4958894	T	C	rs4958894	23273568	4.60E-06	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	C
5	152548160	rs2910036	G	C	rs2910036	23740937	2.89E-06	NA	1.3	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
5	159879978	rs2431697	T	C	rs2431697	18204446	1.00E-10	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
5	159879978	rs2431697	T	C	rs2431697	21408207	2.00E-06	NA	1.32	[1.18-1.47]	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
5	159934161	rs4921296	A	G	rs4921296	23740937	3.95E-04	NA	1.16	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
5	177739628	rs2913774	C	T	rs2913774	24925725	6.48E-05	(Additive)	1.52	[1.25-1.85]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2913774-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	1443801	rs17202895	T	C	rs17202895	24925725	5.71E-05	(Dominant)	1.57	[1.27-1.93]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs17202895-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	5024363	rs2764142	G	A	rs2764142	23740937	3.53E-06	NA	1.31	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
6	15397635	rs9383054	A	G	rs9383054	24871463	7.00E-04	NA	1.23	[1.31-1.15]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9383054-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	15398849	rs2299054	C	T	rs2299054	24871463	6.60E-04	NA	1.23	[1.31-1.16]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2299054-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	16841508	rs12204538	G	A	rs12204538	23740937	4.13E-06	NA	1.46	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
6	18629070	rs7748349	G	A	rs7748349	24871463	7.30E-04	NA	1.25	[1.34-1.18]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7748349-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	19811660	rs9350190	A	G	rs9350190	24925725	2.47E-06	(Dominant)	1.72	[2.13-2.13]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	19811991	rs9368127	G	A	rs9368127	24925725	2.41E-06	(Dominant)	1.72	[2.13-2.13]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	19818560	rs4140624	C	T	rs4140624	24925725	2.18E-06	(Dominant)	1.72	[2.13-2.13]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	19819908	rs12206194	T	C	rs12206194	24925725	3.15E-06	(Dominant)	1.69	[2.13-2.13]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	19820658	rs6910773	T	C	rs6910773	24925725	1.42E-06	(Dominant)	1.72	[2.13-2.13]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	19823238	rs7773456	T	G	rs7773456	24925725	7.00E-07	(Dominant)	1.75	[1.43-2.17]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	25425526	rs7774567	A	G	rs7774567	24871463	1.50E-04	NA	1.65	[1.84-1.47]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7774567-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	25874423	rs13198474	G	A	rs13198474	24871463	1.40E-04	NA	1.61	[1.79-1.45]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs13198474-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	26313348	rs6923139	C	T	rs6923139	24871463	7.70E-04	NA	1.37	[1.50-1.25]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs6923139-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	26367689	rs9379858	T	C	rs9379858	24871463	1.60E-05	NA	1.54	[1.68-1.41]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9379858-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	26369549	rs9379859	C	T	rs9379859	24871463	2.50E-05	NA	1.53	[1.67-1.40]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9379859-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T,C
6	26372786	rs12176317	A	G	rs12176317	24871463	2.40E-05	NA	1.53	[1.67-1.40]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs12176317-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	26463660	rs13195509	G	A	rs13195509	24871463	6.90E-08	NA	1.8	[1.98-1.63]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs13195509-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	26463660	rs13195509	G	A	rs13195509	pha002867	7.66E-06	phs000202	phs000216	2.3	[1.60-3.31]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	BTN2A1	missense
6	26472655	rs7763910	A	G	rs7763910	24871463	4.10E-04	NA	1.26	[1.34-1.19]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7763910-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	26476155	rs1407045	A	G	rs1407045	24871463	3.20E-04	NA	1.25	[1.33-1.18]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1407045-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	26601526	rs9379897	T	C	rs9379897	24871463	1.60E-05	NA	1.52	[1.66-1.39]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9379897-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	26942027	rs9393777	T	C	rs9393777	24871463	1.70E-04	NA	1.41	[1.54-1.30]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9393777-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	27024687	rs12190473	C	T	rs12190473	24871463	5.70E-05	NA	1.41	[1.51-1.31]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs12190473-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	27037080	rs13194491	C	T	rs13194491	24871463	1.40E-04	NA	1.65	[1.93-1.41]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs13194491-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	27185664	rs13219354	T	C	rs13219354	24871463	5.50E-06	NA	1.53	[1.67-1.41]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs13219354-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	27395764	rs6926142	T	C	rs6926142	24871463	3.30E-04	NA	1.31	[1.39-1.23]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs6926142-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	27408181	rs760880	G	A,C,T	rs760880	24871463	9.00E-04	NA	1.29	[1.38-1.22]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs760880-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	27412386	rs7772160	C	T	rs7772160	24871463	3.20E-04	NA	1.31	[1.39-1.23]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7772160-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	27445703	rs7761966	C	T	rs7761966	24871463	5.90E-05	NA	1.32	[1.41-1.25]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7761966-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	27491299	rs6904596	G	A	rs6904596	24871463	1.90E-08	NA	1.73	[1.89-1.58]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs6904596-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	27534528	rs10484399	A	G	rs10484399	24871463	8.90E-09	NA	1.8	[1.97-1.64]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs10484399-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	27534528	rs10484399	A	G	rs10484399	pha002867	8.53E-06	phs000202	phs000216	2.1	[1.51-2.90]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	A	NA	NA
6	27560587	rs10946940	A	G	rs10946940	24871463	8.00E-09	NA	1.45	[1.37-1.54]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs10946940-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	27560587	rs10946940	A	G	rs10946940	pha002867	1.11E-06	phs000202	phs000216	1.65	[1.35-2.01]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	A	NA	NA
6	27683572	rs9380010	A	G	rs9380010	24871463	4.70E-06	NA	1.38	[1.48-1.29]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9380010-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G,A
6	27689502	rs9295740	G	A	rs9295740	24871463	1.70E-06	NA	1.41	[1.51-1.31]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9295740-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	27694421	rs9468209	C	T	rs9468209	24871463	2.10E-05	NA	1.32	[1.40-1.24]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9468209-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	27715243	rs9283880	A	C	rs9283880	24871463	5.90E-06	NA	1.38	[1.48-1.29]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9283880-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	27715243	rs9283880	A	C	rs9283880	pha002867	5.34E-06	phs000202	phs000216	1.71	[1.36-2.16]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	C	NA	NA
6	27721835	rs4713120	C	A	rs4713120	24871463	1.80E-05	NA	1.32	[1.40-1.24]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs4713120-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	27726731	rs7776351	C	T	rs7776351	24871463	2.30E-06	NA	1.39	[1.48-1.30]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7776351-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	27739380	rs742047	A	G	rs742047	24871463	9.40E-07	NA	1.44	[1.54-1.34]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs742047-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	27810626	rs175597	T	C	rs175597	24871463	6.00E-09	NA	1.73	[1.89-1.59]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs175597-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	27811815	rs200997	G	A	rs200997	24871463	6.70E-07	NA	1.39	[1.49-1.30]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs200997-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	27815494	rs200991	C	A	rs200991	24871463	7.60E-08	NA	1.54	[1.67-1.43]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs200991-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	27815639	rs13194781	A	G	rs13194781	24871463	5.80E-09	NA	1.81	[1.98-1.65]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs13194781-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	27815639	rs13194781	A	G	rs13194781	pha002867	6.28E-06	phs000202	phs000216	2.12	[1.53-2.94]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	A	NA	NA
6	27835930	rs200951	A	G	rs200951	24871463	1.10E-06	NA	1.4	[1.50-1.31]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs200951-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	27837267	rs200953	T	C	rs200953	24871463	1.30E-08	NA	1.7	[1.86-1.56]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs200953-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	27859453	rs200969	T	C	rs200969	24871463	1.00E-05	NA	1.4	[1.50-1.30]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs200969-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	27998258	rs149990	G	A	rs149990	24871463	1.10E-05	NA	1.5	[1.63-1.38]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs149990-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	28014597	rs149900	C	T	rs149900	24871463	7.20E-05	NA	1.37	[1.47-1.27]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs149900-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	28021589	rs203888	G	A	rs203888	24871463	1.50E-05	NA	1.38	[1.48-1.28]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs203888-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	28022248	rs203890	T	C	rs203890	24871463	4.80E-05	NA	1.36	[1.46-1.27]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs203890-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	28027688	rs9468276	A	C	rs9468276	24871463	1.60E-05	NA	1.37	[1.47-1.28]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9468276-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	28033087	rs149951	T	C	rs149951	24871463	2.60E-05	NA	1.35	[1.44-1.26]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs149951-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	28048624	rs203877	T	C	rs203877	24871463	3.90E-05	NA	1.35	[1.44-1.26]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs203877-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	28143118	rs9380064	A	G	rs9380064	24871463	9.70E-07	NA	1.56	[1.69-1.43]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9380064-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	28143118	rs9380064	A	G	rs9380064	pha002867	3.75E-06	phs000202	phs000216	1.96	[1.47-2.60]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	A	NA	NA
6	28173219	rs1233708	G	A	rs1233708	24871463	2.00E-05	NA	1.36	[1.45-1.27]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1233708-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	28203300	rs9380069	A	G	rs9380069	24871463	4.20E-07	NA	1.57	[1.71-1.45]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9380069-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	28203300	rs9380069	A	G	rs9380069	pha002867	1.38E-06	phs000202	phs000216	2.03	[1.52-2.70]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	NA	NA
6	28209102	rs9295768	G	A	rs9295768	24871463	1.70E-06	NA	1.46	[1.57-1.35]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9295768-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	28210688	rs967005	C	T	rs967005	24871463	2.50E-07	NA	1.5	[1.62-1.39]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs967005-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	28210688	rs967005	C	T	rs967005	pha002867	3.38E-05	phs000202	phs000216	1.68	[1.32-2.15]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	NA	NA
6	28242794	rs1419183	A	C	rs1419183	24871463	1.30E-07	NA	1.57	[1.70-1.45]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1419183-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	28242794	rs1419183	A	C	rs1419183	pha002867	5.14E-07	phs000202	phs000216	2.03	[1.54-2.68]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	ZNF187	intron
6	28257377	rs13211507	T	C	rs13211507	24871463	2.30E-08	NA	1.78	[1.95-1.62]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs13211507-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	28257377	rs13211507	T	C	rs13211507	pha002867	8.18E-06	phs000202	phs000216	2.1	[1.52-2.91]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	T	PGBD1	intron
6	28299687	rs853676	C	T	rs853676	24871463	5.70E-07	NA	1.5	[1.63-1.39]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs853676-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	28299687	rs853676	C	T	rs853676	pha002867	6.14E-06	phs000202	phs000216	1.87	[1.43-2.46]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	ZNF323	intron
6	28331252	rs213228	A	C	rs213228	24871463	7.80E-04	NA	1.22	[1.30-1.15]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs213228-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	28346910	rs7774981	T	C	rs7774981	24871463	7.40E-04	NA	1.26	[1.34-1.17]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7774981-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	28354250	rs3799499	G	T	rs3799499	24871463	6.20E-04	NA	1.26	[1.35-1.18]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3799499-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	28358320	rs1361385	A	G	rs1361385	24871463	8.10E-04	NA	1.23	[1.32-1.16]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1361385-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	28391465	rs2859365	A	G	rs2859365	24871463	9.80E-04	NA	1.22	[1.29-1.14]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2859365-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	28630691	rs13194504	G	A	rs13194504	24871463	7.70E-09	NA	1.81	[1.98-1.65]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs13194504-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	28630691	rs13194504	G	A	rs13194504	pha002867	1.01E-05	phs000202	phs000216	2.06	[1.49-2.84]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	NA	NA
6	28669315	rs6939576	G	A	rs6939576	24871463	5.70E-04	NA	1.27	[1.36-1.19]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs6939576-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	28689672	rs9468413	C	A	rs9468413	24871463	7.90E-05	NA	1.38	[1.49-1.27]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9468413-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	28700352	rs6456834	T	G	rs6456834	24871463	1.00E-04	NA	1.37	[1.48-1.27]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs6456834-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	28712663	rs1233579	A	G	rs1233579	24871463	5.40E-08	NA	1.75	[1.92-1.59]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1233579-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	28712663	rs1233579	A	G	rs1233579	pha002867	2.44E-05	phs000202	phs000216	1.99	[1.45-2.74]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	A	NA	NA
6	28776117	rs4324798	G	A	rs4324798	24871463	5.40E-09	NA	1.8	[1.97-1.64]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs4324798-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	28776117	rs4324798	G	A	rs4324798	pha002867	1.89E-05	phs000202	phs000216	1.99	[1.45-2.74]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	NA	NA
6	28792477	rs209181	G	A	rs209181	24871463	2.00E-04	NA	1.42	[1.53-1.31]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs209181-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	28837437	rs3131093	C	T	rs3131093	24871463	9.30E-09	NA	1.78	[1.95-1.63]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3131093-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	28837437	rs3131093	C	T	rs3131093	pha002867	1.67E-05	phs000202	phs000216	2	[1.46-2.75]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	T	NA	NA
6	28954293	rs3129791	G	A	rs3129791	24871463	2.30E-09	NA	1.82	NA	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3129791-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	28954293	rs3129791	G	A	rs3129791	pha002867	1.10E-05	phs000202	phs000216	2.04	[1.48-2.79]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	NA	NA
6	28980707	rs3130893	A	G	rs3130893	24871463	1.30E-09	NA	1.84	[2.01-1.68]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3130893-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	28980707	rs3130893	A	G	rs3130893	pha002867	9.64E-06	phs000202	phs000216	2.05	[1.49-2.81]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	A	NA	NA
6	29031142	rs3117143	C	A	rs3117143	24871463	3.30E-11	NA	1.98	[2.18-1.80]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3117143-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	29149561	rs3116817	G	A	rs3116817	24871463	3.70E-04	NA	1.24	[1.32-1.16]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3116817-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	29179237	rs3130817	T	G	rs3130817	24871463	2.50E-07	NA	1.5	[1.62-1.40]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3130817-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	29230683	rs3130827	T	C	rs3130827	24871463	1.10E-04	NA	1.29	[1.37-1.20]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3130827-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	29256420	rs1884123	A	G	rs1884123	24871463	2.80E-05	NA	1.31	[1.40-1.23]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1884123-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	29272012	rs3117426	C	T	rs3117426	24871463	1.60E-09	NA	1.58	[1.69-1.47]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3117426-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	29284518	rs720831	A	G	rs720831	24871463	5.00E-04	NA	1.25	[1.32-1.18]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs720831-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	29342775	rs3749971	G	A	rs3749971	24871463	1.20E-08	NA	1.74	[1.91-1.59]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3749971-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	29442701	rs2746150	C	T	rs2746150	24871463	2.90E-09	NA	1.81	[1.98-1.65]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2746150-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	29442701	rs2746150	C	T	rs2746150	pha002867	3.42E-05	phs000202	phs000216	1.91	[1.41-2.59]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	C	NA	NA
6	29468809	rs1233487	A	G	rs1233487	24871463	5.60E-06	NA	1.39	[1.48-1.30]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1233487-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	29537224	rs1235162	A	G	rs1235162	24871463	8.10E-09	NA	1.77	[1.94-1.62]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1235162-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	29611431	rs29232	C	T	rs29232	24871463	1.90E-04	NA	1.32	[1.41-1.23]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs29232-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	29906691	rs2860580	A	C,G,T	rs2860580	24871463	5.70E-04	NA	1.28	[1.37-1.20]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2860580-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	29918099	rs2517713	G	T	rs2517713	24871463	5.30E-04	NA	1.3	[1.39-1.22]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2517713-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	29945949	rs3132685	G	A,C,T	rs3132685	24871463	2.50E-10	NA	1.81	[1.96-1.66]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3132685-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	29945949	rs3132685	G	A,C,T	rs3132685	pha002867	1.14E-05	phs000202	phs000216	1.9	[1.43-2.54]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	C	HCG9	intron
6	30032522	rs8321	A	C	rs8321	24871463	3.80E-11	NA	1.9	[2.08-1.74]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs8321-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	30032522	rs8321	A	C	rs8321	pha002867	6.18E-06	phs000202	phs000216	1.18	[0.93-1.47]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	T	ZNRD1	UTR-3
6	30038647	rs9261290	T	C	rs9261290	24871463	3.80E-10	NA	1.83	NA	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9261290-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	30038647	rs9261290	T	C	rs9261290	pha002867	1.73E-05	phs000202	phs000216	1.92	[1.43-2.59]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	T	RNF39	UTR-3
6	30073847	rs2844795	C	T	rs2844795	24871463	2.40E-05	NA	1.37	[1.46-1.28]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2844795-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	30078275	rs2523989	C	T	rs2523989	24871463	3.00E-07	NA	1.57	[1.69-1.45]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2523989-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	30079993	rs2523987	A	C	rs2523987	24871463	5.30E-08	NA	1.63	[1.77-1.51]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2523987-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	30080274	rs2517598	G	A	rs2517598	24871463	1.00E-06	NA	1.51	[1.63-1.40]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2517598-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	30120563	rs2257914	C	A	rs2257914	24871463	9.00E-04	NA	1.41	[1.55-1.28]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2257914-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	30140525	rs6905949	T	C	rs6905949	24871463	9.40E-04	NA	1.37	[1.49-1.25]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs6905949-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	30207495	rs2844773	C	A	rs2844773	24871463	2.50E-07	NA	1.56	[1.68-1.44]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2844773-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	30207495	rs2844773	C	A	rs2844773	pha002867	1.17E-05	phs000202	phs000216	1.8	[1.38-2.34]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	NA	NA
6	30231224	rs3094073	G	A	rs3094073	24871463	1.70E-07	NA	1.56	[1.69-1.45]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3094073-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T,C
6	30231224	rs3094073	G	A	rs3094073	pha002867	7.68E-06	phs000202	phs000216	1.81	[1.40-2.36]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	T,C	NA	NA
6	30279130	rs3130380	G	A	rs3130380	24871463	1.30E-09	NA	1.8	[1.96-1.65]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3130380-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	30301600	rs12663184	C	T	rs12663184	24871463	2.50E-04	NA	1.47	[1.62-1.33]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs12663184-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	30327839	rs3130350	G	T	rs3130350	24871463	2.40E-12	NA	1.97	[2.15-1.80]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3130350-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	30332555	rs1012411	T	G	rs1012411	24871463	1.40E-04	NA	1.31	[1.40-1.23]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1012411-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	30333505	rs3094054	G	T	rs3094054	24871463	7.20E-11	NA	1.88	[2.05-1.73]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3094054-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	30333505	rs3094054	G	T	rs3094054	pha002867	3.65E-05	phs000202	phs000216	1.86	[1.38-2.49]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	C	NA	NA
6	30451904	rs3094694	T	C	rs3094694	24871463	7.80E-06	NA	1.44	[1.55-1.34]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3094694-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	30544401	rs3132610	A	G	rs3132610	24871463	1.90E-08	NA	1.72	[1.87-1.58]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3132610-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	30652781	rs9262143	C	T	rs9262143	24871463	4.60E-11	NA	1.95	[2.13-1.78]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9262143-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	30697447	rs3094127	A	G	rs3094127	24871463	8.20E-05	NA	1.33	[1.42-1.24]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3094127-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	30732054	rs3129975	T	C	rs3129975	24871463	3.10E-09	NA	1.53	[1.64-1.43]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3129975-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	30732054	rs3129975	T	C	rs3129975	pha002867	2.40E-07	phs000202	phs000216	1.85	[1.47-2.34]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	T	NA	NA
6	30782002	rs886424	C	T	rs886424	24871463	6.70E-12	NA	1.83	[1.99-1.69]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs886424-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	30805921	rs3095352	C	T	rs3095352	24871463	1.90E-04	NA	1.28	[1.36-1.20]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3095352-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G,A
6	30822771	rs3130653	C	A	rs3130653	24871463	3.40E-04	NA	1.25	[1.34-1.18]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3130653-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	30824532	rs2844659	C	T	rs2844659	24871463	2.20E-11	NA	1.66	[1.78-1.55]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2844659-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	30829522	rs2844657	A	G	rs2844657	24871463	9.30E-08	NA	1.54	[1.65-1.43]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2844657-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	30848253	rs7756521	T	C	rs7756521	24871463	7.70E-04	NA	1.37	[1.48-1.27]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7756521-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	30890871	rs753725	T	C	rs753725	24871463	4.10E-05	NA	1.31	[1.39-1.23]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs753725-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	30894759	rs2532934	G	A	rs2532934	24871463	3.70E-05	NA	1.31	[1.39-1.23]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2532934-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	30896147	rs3873334	G	A	rs3873334	24871463	4.60E-04	NA	1.38	[1.51-1.27]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3873334-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	30905313	rs3132571	A	G	rs3132571	24871463	3.80E-05	NA	1.28	[1.37-1.21]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3132571-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	30920124	rs3132580	G	A	rs3132580	24871463	3.60E-12	NA	1.8	[1.94-1.66]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3132580-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	30920124	rs3132580	G	A	rs3132580	pha002867	1.66E-05	phs000202	phs000216	1.77	[1.37-2.30]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	C	DPCR1	missense
6	30921882	rs3757340	T	C	rs3757340	24871463	5.00E-04	NA	1.3	[1.39-1.22]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3757340-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	30932309	rs2844697	C	T	rs2844697	24871463	1.70E-06	NA	1.38	[1.46-1.29]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2844697-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	30933794	rs3095089	G	T	rs3095089	24871463	4.80E-11	NA	1.68	[1.81-1.56]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3095089-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	30933794	rs3095089	G	T	rs3095089	pha002867	2.09E-05	phs000202	phs000216	1.69	[1.33-2.16]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	C	NA	NA
6	30957618	rs886403	T	C	rs886403	24871463	1.00E-06	NA	1.38	[1.47-1.29]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs886403-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	30957618	rs886403	T	C	rs886403	pha002867	5.60E-07	phs000202	phs000216	1.72	[1.39-2.12]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	T	MUC21	UTR-3
6	30972589	rs1634717	G	T	rs1634717	24871463	1.00E-05	NA	1.3	[1.38-1.22]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1634717-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	30972865	rs1634718	A	G	rs1634718	24871463	6.10E-08	NA	1.45	[1.55-1.36]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1634718-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	30972865	rs1634718	A	G	rs1634718	pha002867	2.64E-08	phs000202	phs000216	1.87	[1.50-2.34]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	A	MUC22	nearGene-5
6	30983683	rs3871466	T	C	rs3871466	24871463	8.80E-05	NA	1.44	[1.59-1.30]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3871466-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	30983683	rs3871466	T	C	rs3871466	pha002867	3.74E-05	phs000202	phs000216	1.82	[1.37-2.44]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	A	MUC22	intron
6	30987176	rs4713411	C	A	rs4713411	24871463	8.50E-05	NA	1.3	[1.39-1.22]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs4713411-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	30987211	rs4713412	A	G	rs4713412	24871463	1.60E-04	NA	1.29	[1.38-1.20]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs4713412-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	30987786	rs7758976	A	G	rs7758976	24871463	1.20E-05	NA	1.33	[1.42-1.25]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7758976-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	30993533	rs2523898	A	G	rs2523898	24871463	4.00E-05	NA	1.31	[1.39-1.23]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2523898-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	31023524	rs7744253	T	C	rs7744253	24871463	8.40E-04	NA	1.35	[1.45-1.25]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7744253-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C,T
6	31052127	rs2535315	C	T	rs2535315	24871463	6.10E-04	NA	1.33	[1.42-1.25]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2535315-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31052684	rs2535311	A	G	rs2535311	24871463	6.20E-04	NA	1.33	[1.42-1.25]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2535311-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	31058340	rs3130544	C	A	rs3130544	24871463	2.30E-15	NA	2	[2.17-1.85]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3130544-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31058340	rs3130544	C	A	rs3130544	pha002867	1.95E-06	phs000202	phs000216	1.93	[1.47-2.53]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	C	NA	NA
6	31067009	rs2517403	T	C	rs2517403	24871463	2.90E-07	NA	1.33	[1.41-1.25]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2517403-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A,G
6	31067009	rs2517403	T	C	rs2517403	pha002867	3.96E-06	phs000202	phs000216	1.6	[1.31-1.96]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	A,G	NA	NA
6	31075481	rs2844635	A	G	rs2844635	24871463	5.90E-07	NA	1.32	[1.40-1.24]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2844635-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	31075481	rs2844635	A	G	rs2844635	pha002867	6.41E-06	phs000202	phs000216	1.58	[1.30-1.93]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	T	NA	NA
6	31081205	rs2233956	T	C	rs2233956	24871463	3.40E-06	NA	1.52	[1.64-1.41]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2233956-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	31089631	rs111199278	C	T	rs3095314	24871463	9.30E-04	NA	1.23	[1.31-1.16]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3095314-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31089631	rs3095314	C	T	rs3095314	24871463	9.30E-04	NA	1.23	[1.31-1.16]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3095314-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31091992	rs3094204	A	G	rs3094204	24871463	2.50E-04	NA	1.31	[1.39-1.23]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3094204-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31091992	rs545914110	A	G	rs3094204	24871463	2.50E-04	NA	1.31	[1.39-1.23]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3094204-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31101674	rs3130564	C	T	rs3130564	24871463	1.40E-07	NA	1.55	[1.66-1.44]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3130564-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31106268	rs3130573	A	G	rs3130573	24871463	2.20E-04	NA	1.24	[1.32-1.17]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3130573-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	31114182	rs746647	A	G	rs746647	24871463	9.00E-04	NA	1.2	[1.28-1.13]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs746647-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	31129310	rs7750641	C	T	rs7750641	24871463	1.50E-13	NA	1.94	[2.10-1.79]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7750641-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31129310	rs7750641	C	T	rs7750641	pha002867	5.60E-06	phs000202	phs000216	1.88	[1.43-2.47]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	C	TCF19	missense
6	31140047	rs1265159	G	A	rs1265159	24871463	9.50E-06	NA	1.36	[1.46-1.27]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1265159-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31145920	rs887464	C	T	rs887464	24871463	3.80E-06	NA	1.38	[1.47-1.30]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs887464-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31154620	rs6921663	T	C	rs6921663	24925725	9.83E-04	(Dominant)	1.52	[1.21-1.91]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs6921663-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31162963	rs4713447	A	G	rs4713447	24925725	1.44E-04	(Dominant)	1.55	[1.22-1.96]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs4713447-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31166539	rs9404982	G	A	rs9404982	24925725	1.90E-04	(Dominant)	1.54	[1.22-1.95]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9404982-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G,A
6	31167815	rs3868075	A	G	rs3868075	24925725	2.23E-04	(Dominant)	1.54	[1.22-1.95]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3868075-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31170528	rs9263871	A	G	rs9263871	24925725	9.00E-06	(Dominant)	1.7	[1.35-2.13]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9263871-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31170713	rs9263873	T	C	rs9263873	24925725	2.47E-04	(Dominant)	1.54	[1.21-1.95]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9263873-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31184196	rs3869109	A	G	rs3869109	24871463	2.40E-04	NA	1.3	[1.39-1.22]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3869109-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31199208	rs3130473	C	T	rs3130473	24871463	5.40E-06	NA	1.37	[1.46-1.28]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3130473-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	NA
6	31229678	rs11966319	C	T	rs11966319	24925725	2.79E-04	(Dominant)	1.6	[1.21-2.12]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs11966319-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31229701	rs11966332	C	T	rs11966332	24925725	2.77E-04	(Dominant)	1.6	[1.21-2.12]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs11966332-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31240128	rs2074489	C	T	rs2074489	24925725	4.40E-04	(Dominant)	1.54	[1.22-1.95]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2074489-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31240431	rs2074488	G	T	rs2074488	24925725	2.58E-04	(Dominant)	1.61	[1.21-2.13]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2074488-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31243170	rs3132486	G	A	rs3132486	24871463	9.60E-05	NA	1.31	[1.39-1.23]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3132486-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	31251462	rs2394963	C	T	rs2394963	24925725	5.63E-04	(Dominant)	1.54	[1.22-1.95]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2394963-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31254263	rs7754443	G	A	rs7754443	24925725	6.34E-04	(Dominant)	1.53	[1.22-1.93]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs7754443-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31254936	rs9468920	G	A	rs9468920	24925725	6.26E-04	(Dominant)	1.53	[1.22-1.93]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9468920-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31257104	rs4628144	T	C	rs4628144	24925725	6.19E-04	(Dominant)	1.53	[1.22-1.93]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs4628144-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	31258968	rs3906269	G	A	rs3906269	24925725	6.21E-04	(Dominant)	1.53	[1.22-1.93]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3906269-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31261276	rs2243868	A	G	rs2243868	24871463	4.80E-05	NA	1.34	[1.42-1.27]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2243868-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31262169	rs3873379	T	C	rs3873379	24925725	6.21E-04	(Dominant)	1.53	[1.22-1.93]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3873379-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	31266522	rs2524089	G	T	rs2524089	24871463	4.30E-05	NA	1.34	[1.42-1.27]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2524089-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	31272261	rs6457374	C	T	rs6457374	24871463	1.70E-11	NA	1.73	[1.85-1.61]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs6457374-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	31317347	rs2156875	C	T	rs2156875	24871463	8.30E-05	NA	1.3	[1.38-1.22]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2156875-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31318144	rs2523619	T	C	rs2523619	24871463	4.40E-05	NA	1.46	[1.58-1.35]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2523619-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	31321211	rs2596501	C	T	rs2596501	24871463	3.50E-09	NA	1.55	[1.64-1.45]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2596501-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	31322487	rs3819294	G	A	rs3819294	24925725	5.90E-04	(Dominant)	2	[1.40-2.87]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3819294-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31327334	rs2523589	G	T	rs2523589	24871463	4.20E-07	NA	1.42	[1.51-1.33]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2523589-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31327334	rs2523589	G	T	rs2523589	24925725	1.77E-04	(Dominant)	1.69	[1.31-2.19]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2523589-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31327701	rs9378249	T	G	rs9378249	24925725	6.19E-04	(Dominant)	1.98	[1.39-2.84]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9378249-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	31331829	rs2523554	C	T	rs2523554	24871463	3.10E-11	NA	1.62	[1.72-1.52]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2523554-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	NA
6	31334945	rs2844575	T	C	rs2844575	24871463	2.60E-04	NA	1.27	[1.36-1.19]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2844575-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	31336870	rs2253907	C	T	rs2253907	24871463	1.50E-04	NA	1.31	[1.39-1.23]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2253907-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	31353593	rs2844529	G	A	rs2844529	24871463	1.00E-05	NA	1.43	[1.53-1.33]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2844529-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	31354104	rs2428486	T	C	rs2428486	24871463	7.20E-06	NA	1.44	[1.54-1.35]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2428486-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31354560	rs13437082	C	T	rs13437082	24871463	7.20E-04	NA	1.37	[1.47-1.28]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs13437082-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	31354819	rs4711269	C	T	rs4711269	24871463	6.80E-04	NA	1.37	[1.47-1.28]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs4711269-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	31355318	rs2596560	T	C	rs2596560	24871463	4.70E-10	NA	1.58	[1.69-1.48]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2596560-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	31362930	rs2523467	C	T	rs2523467	24871463	4.90E-06	NA	1.45	[1.55-1.35]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2523467-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	NA
6	31364707	rs2251396	G	A	rs2251396	24871463	7.90E-07	NA	1.45	[1.55-1.36]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2251396-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31379115	rs1131896	G	A	rs1131896	24871463	1.20E-04	NA	1.4	[1.50-1.30]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1131896-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31379198	rs2256028	C	A	rs2256028	24871463	3.80E-04	NA	1.45	[1.58-1.33]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2256028-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31388214	rs2844513	G	A	rs2844513	24871463	3.90E-06	NA	1.43	[1.52-1.35]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2844513-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	NA
6	31389784	rs2844511	A	G	rs2844511	24871463	8.30E-08	NA	1.51	[1.60-1.41]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2844511-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	NA
6	31409605	rs9267084	G	A	rs9267084	24925725	3.89E-05	(Dominant)	1.82	[2.38-2.38]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	NA
6	31417191	rs3128982	A	G	rs3128982	24871463	2.00E-06	NA	1.42	[1.52-1.34]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3128982-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	NA
6	31432125	rs2284178	C	T	rs2284178	24871463	3.50E-05	NA	1.34	[1.42-1.27]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2284178-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	NA
6	31440082	rs1055569	C	T	rs1055569	24871463	9.70E-04	NA	1.34	[1.43-1.25]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1055569-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	NA
6	31445909	rs2395488	A	G	rs2395488	24871463	3.40E-08	NA	1.42	[1.51-1.33]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2395488-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	NA
6	31445909	rs2395488	A	G	rs2395488	pha002867	5.72E-06	phs000202	phs000216	1.56	[1.29-1.89]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	NA	NA	NA
6	31446466	rs2248372	G	A	rs2248372	24871463	6.80E-06	NA	1.42	[1.52-1.33]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2248372-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	NA
6	31448976	rs3099844	C	A	rs3099844	24871463	6.10E-16	NA	2.01	[2.18-1.86]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3099844-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	NA
6	31448976	rs3099844	C	A	rs3099844	pha002867	7.98E-06	phs000202	phs000216	1.83	[1.41-2.39]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	NA	NA	NA
6	31472720	rs2855812	G	T	rs2855812	24871463	7.10E-09	NA	1.55	[1.66-1.45]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2855812-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	NA
6	31476854	rs2844498	C	T	rs2844498	24871463	1.50E-05	NA	1.38	[1.47-1.30]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2844498-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31489644	rs3132454	A	G	rs3132454	24871463	6.20E-04	NA	1.31	[1.40-1.23]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3132454-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	31515799	rs2071591	G	A	rs2071591	24871463	3.50E-07	NA	1.43	[1.53-1.34]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2071591-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31540784	rs1041981	C	A	rs1041981	24871463	5.20E-07	NA	1.42	[1.51-1.33]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1041981-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31568469	rs2857595	G	A	rs2857595	24871463	7.60E-15	NA	1.81	[1.95-1.69]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2857595-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31568469	rs2857595	G	A	rs2857595	pha002867	6.48E-06	phs000202	phs000216	1.71	[1.36-2.16]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	C	NA	NA
6	31572956	rs2844479	A	C	rs2844479	24871463	9.30E-04	NA	1.33	[1.42-1.25]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2844479-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	31593476	rs2260000	A	G	rs2260000	24871463	5.00E-05	NA	1.36	[1.46-1.28]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2260000-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	31597753	rs2242660	G	A	rs2242660	24871463	3.70E-09	NA	1.47	[1.56-1.38]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2242660-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	31601843	rs3115663	T	C	rs3115663	24871463	8.30E-14	NA	1.75	[1.88-1.63]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3115663-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31602967	rs1046089	G	A	rs1046089	24871463	2.70E-10	NA	1.54	[1.64-1.45]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1046089-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31602967	rs1046089	G	A	rs1046089	pha002867	1.30E-05	phs000202	phs000216	1.57	[1.28-1.92]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	PRRC2A	missense
6	31603770	rs11229	A	G	rs11229	24871463	7.80E-14	NA	1.75	[1.88-1.63]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs11229-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	31610529	rs1077393	A	G	rs1077393	24871463	1.40E-08	NA	1.48	[1.58-1.39]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1077393-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	31616366	rs805303	G	A	rs805303	24871463	7.40E-08	NA	1.41	[1.49-1.32]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs805303-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31620520	rs3117582	T	G	rs3117582	24871463	1.10E-20	NA	2.28	[2.47-2.10]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3117582-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	31620520	rs3117582	T	G	rs3117582	pha002867	4.53E-08	phs000202	phs000216	2.21	[1.66-2.93]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	A	APOM	intron
6	31632134	rs3130618	C	A	rs3130618	24871463	6.50E-14	NA	1.76	[1.88-1.63]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3130618-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31688217	rs805294	A	G	rs805294	24871463	4.10E-08	NA	1.4	[1.49-1.32]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs805294-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	NA
6	31688217	rs805294	A	G	rs805294	pha002867	5.69E-06	phs000202	phs000216	1.59	[1.30-1.94]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	NA	LY6G6C	intron
6	31721033	rs3131379	G	A	rs3131379	18204446	2.00E-52	NA	2.36	[2.11-2.64]	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3131379-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
6	31721033	rs3131379	G	A	rs3131379	24871463	2.60E-20	NA	2.26	[2.45-2.08]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3131379-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31721033	rs3131379	G	A	rs3131379	pha002867	4.89E-08	phs000202	phs000216	2.2	[1.66-2.92]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	C	MSH5	intron
6	31726688	rs707939	C	A	rs707939	24871463	3.00E-04	NA	1.33	[1.42-1.25]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs707939-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31742590	rs707928	A	G	rs707928	24871463	1.40E-07	NA	1.4	[1.49-1.31]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs707928-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31742590	rs707928	A	G	rs707928	pha002867	3.39E-05	phs000202	phs000216	1.53	[1.25-1.88]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	C	VWA7	intron
6	31777946	rs2075800	C	T	rs2075800	24871463	2.00E-04	NA	1.35	[1.44-1.27]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2075800-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31794592	rs2763979	C	T	rs2763979	24871463	2.90E-07	NA	1.38	[1.47-1.30]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2763979-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	31794592	rs2763979	C	T	rs2763979	pha002867	8.14E-06	phs000202	phs000216	1.58	[1.29-1.93]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	T	HSPA1B	nearGene-5
6	31837277	rs660550	C	A	rs660550	24871463	3.20E-10	NA	1.59	[1.69-1.49]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs660550-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31838441	rs644827	T	C	rs644827	24871463	4.10E-10	NA	1.59	[1.69-1.49]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs644827-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31838713	rs494620	G	A	rs494620	24871463	2.20E-07	NA	1.49	[1.59-1.41]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs494620-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31839309	rs2242665	C	T	rs2242665	24871463	4.80E-10	NA	1.58	[1.68-1.49]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2242665-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31843924	rs2736428	C	T	rs2736428	24871463	3.40E-05	NA	1.38	[1.47-1.30]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2736428-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31851234	rs652888	A	G	rs652888	24871463	1.00E-10	NA	1.64	[1.76-1.53]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs652888-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31851234	rs652888	A	G	rs652888	pha002867	1.56E-05	phs000202	phs000216	1.66	[1.32-2.09]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	C	EHMT2	intron
6	31860337	rs535586	T	C	rs535586	24871463	5.60E-11	NA	1.64	[1.75-1.54]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs535586-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31864304	rs659445	G	A	rs659445	24871463	4.30E-11	NA	1.65	[1.75-1.54]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs659445-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31870326	rs558702	G	A	rs558702	24871463	8.00E-21	NA	2.28	[2.10-2.47]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs558702-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31870326	rs558702	G	A	rs558702	pha002867	4.20E-08	phs000202	phs000216	2.2	[1.66-2.92]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	C	C2	intron
6	31893944	rs2734335	G	A	rs2734335	24871463	2.60E-06	NA	1.45	[1.54-1.35]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2734335-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	31917540	rs4151657	T	C	rs4151657	24871463	4.70E-05	NA	1.39	[1.48-1.30]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs4151657-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	31918860	rs1270942	A	G	rs1270942	18204446	1.27E-51	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
6	31918860	rs1270942	A	G	rs1270942	24871463	4.20E-20	NA	2.24	[2.43-2.07]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1270942-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	31918860	rs1270942	A	G	rs1270942	pha002867	7.82E-08	phs000202	phs000216	2.16	[1.63-2.85]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	T	CFB	intron
6	31919578	rs2072633	A	G	rs2072633	24871463	2.90E-06	NA	1.44	[1.53-1.35]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2072633-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	31922254	rs630379	A	C	rs630379	24871463	5.50E-14	NA	1.8	[1.92-1.69]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs630379-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31929014	rs437179	A	C	rs437179	24871463	4.80E-11	NA	1.66	[1.76-1.56]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs437179-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31929014	rs437179	A	C	rs437179	pha002867	8.61E-06	phs000202	phs000216	1.59	[1.30-1.96]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	SKIV2L	missense
6	31930441	rs592229	G	T	rs592229	24871463	1.70E-07	NA	1.51	[1.60-1.41]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs592229-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31940897	rs389884	A	G	rs389884	24871463	1.30E-19	NA	2.23	[2.41-2.05]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs389884-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	31940897	rs389884	A	G	rs389884	24925725	9.98E-05	(Dominant)	1.53	[1.22-1.90]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs389884-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	31940897	rs389884	A	G	rs389884	pha002867	9.42E-08	phs000202	phs000216	2.14	[1.62-2.84]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	T	STK19	intron
6	31946614	rs6941112	G	A	rs6941112	24871463	2.40E-04	NA	1.36	[1.45-1.27]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs6941112-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	31947460	rs389883	G	T	rs389883	24871463	7.00E-11	NA	1.65	[1.76-1.56]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs389883-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	31947460	rs389883	G	T	rs389883	pha002867	1.56E-05	phs000202	phs000216	1.57	[1.28-1.93]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	A	STK19	intron
6	32014828	rs433061	G	A	rs433061	24925725	9.08E-05	(Dominant)	1.53	[1.23-1.91]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs433061-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32026107	rs1009382	C	T	rs1009382	18058064	5.18E-06	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 538 Japanese controls	Japanese(632)	ALL(632)	ASN(632)	ALL(632)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	A	TNXB
6	32030284	rs2239689	G	A	rs2239689	24871463	7.50E-05	NA	1.38	[1.47-1.28]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2239689-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32038550	rs1150755	C	T	rs1150755	24925725	2.31E-05	(Dominant)	1.58	[1.27-1.96]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs1150755-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A,G
6	32038700	rs2071295	C	T	rs2071295	24871463	5.50E-05	NA	1.38	[1.48-1.30]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2071295-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32050067	rs185819	T	C	rs185819	24871463	2.90E-08	NA	1.51	[1.60-1.41]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs185819-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32050758	rs1150754	C	T	rs1150754	21408207	6.00E-29	NA	2.21	[1.93-2.53]	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1150754-A	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
6	32050758	rs1150754	C	T	rs1150754	24925725	2.30E-05	(Dominant)	1.58	[1.27-1.96]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs1150754-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32059867	rs1150753	A	G	rs1150753	24925725	8.42E-05	(Dominant)	1.54	[1.23-1.92]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs1150753-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32064726	rs1150752	T	C	rs1150752	24925725	8.30E-05	(Dominant)	1.54	[1.23-1.92]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs1150752-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32076499	rs2269426	G	A	rs2269426	24871463	4.90E-07	NA	1.48	[1.58-1.39]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2269426-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32080146	rs3130342	A	C	rs3130342	18058064	9.30E-07	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 538 Japanese controls	Japanese(632)	ALL(632)	ASN(632)	ALL(632)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	G	NA
6	32083175	rs8111	C	T	rs8111	24871463	7.70E-05	NA	1.41	[1.52-1.32]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs8111-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32109979	rs204999	A	G	rs204999	24871463	3.10E-05	NA	1.34	[1.43-1.26]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs204999-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32146492	rs3134945	C	A	rs3134945	24871463	3.20E-08	NA	1.52	[1.62-1.41]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3134945-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32151222	rs1035798	G	A	rs1035798	24871463	8.50E-04	NA	1.38	[1.48-1.28]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1035798-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32154998	rs204994	C	T	rs204994	24871463	3.90E-07	NA	1.49	[1.59-1.39]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs204994-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32161430	rs204990	C	A	rs204990	24871463	4.40E-09	NA	1.57	[1.68-1.46]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs204990-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32168771	rs3134942	G	T	rs3134942	24871463	1.10E-18	NA	2.1	[2.27-1.94]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3134942-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32168771	rs3134942	G	T	rs3134942	pha002867	1.86E-08	phs000202	phs000216	2.17	[1.66-2.84]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	A	NOTCH4	cds-synon
6	32172993	rs3131296	C	T	rs3131296	24871463	1.90E-17	NA	1.99	[2.15-1.85]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3131296-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32172993	rs3131296	C	T	rs3131296	pha002867	1.09E-08	phs000202	phs000216	2.18	[1.67-2.85]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	NOTCH4	intron
6	32177900	rs9267833	T	C	rs9267833	24871463	6.10E-04	NA	1.39	[1.50-1.30]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9267833-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32179438	rs3132956	G	A	rs3132956	24925725	9.62E-05	(Dominant)	1.49	[1.21-1.85]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3132956-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32182759	rs206015	G	A	rs206015	24871463	8.40E-05	NA	1.52	[1.69-1.37]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs206015-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32182759	rs206015	G	A	rs206015	pha002867	7.69E-06	phs000202	phs000216	1.96	[1.47-2.63]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	T	NOTCH4	intron
6	32190620	rs3134931	T	C	rs3134931	24871463	5.00E-05	NA	1.36	[1.46-1.27]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3134931-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32195017	rs482759	A	G	rs482759	24871463	3.00E-04	NA	1.4	[1.53-1.30]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs482759-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32203537	rs3130299	A	G	rs3130299	24871463	3.10E-07	NA	1.58	[1.70-1.47]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3130299-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32205942	rs6901158	C	T	rs6901158	24925725	6.12E-05	(Dominant)	1.55	[1.25-1.93]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs6901158-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32209027	rs382259	T	C	rs382259	24871463	6.80E-06	NA	1.58	[1.69-1.47]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs382259-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32211317	rs411326	C	T	rs411326	24871463	9.00E-05	NA	1.33	[1.43-1.23]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs411326-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32215472	rs3130309	A	G	rs3130309	24925725	4.83E-06	(Additive)	1.45	[1.25-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3130309-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32217092	rs6936204	T	C	rs6936204	24925725	2.92E-06	(Additive)	1.46	[1.26-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs6936204-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32217232	rs9267972	A	G	rs9267972	24925725	2.00E-06	(Dominant)	1.85	NA	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9267972-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32218843	rs3115573	A	G	rs3115573	24871463	1.50E-04	NA	1.36	[1.45-1.28]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3115573-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32218989	rs9296015	G	A	rs9296015	24871463	4.30E-05	NA	1.46	[1.59-1.33]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9296015-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32219725	rs4959089	A	G	rs4959089	24871463	6.30E-05	NA	1.45	[1.58-1.33]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs4959089-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32220685	rs3130315	G	A	rs3130315	24871463	1.50E-04	NA	1.36	[1.45-1.28]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3130315-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32220918	rs3115571	A	G	rs3115571	24925725	3.93E-06	(Additive)	1.45	[1.25-1.68]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3115571-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32221228	rs3130316	T	C	rs3130316	24925725	3.93E-06	(Additive)	1.45	[1.25-1.68]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3130316-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32221782	rs3096700	A	C	rs3096700	24925725	4.01E-06	(Additive)	1.45	[1.25-1.68]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3096700-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32223258	rs3130320	T	C	rs3130320	21408207	3.00E-06	case-only	1.39	[1.21-1.60]	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3130320-T	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
6	32223258	rs3130320	T	C	rs3130320	24871463	8.80E-14	NA	1.72	[1.83-1.61]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3130320-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32223258	rs3130320	T	C	rs3130320	24925725	9.30E-06	(Dominant)	1.71	[1.36-2.15]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3130320-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32223925	rs3130322	T	C	rs3130322	24925725	4.39E-05	(Dominant)	1.54	[1.25-1.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3130322-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32224139	rs3115569	G	A	rs3115569	24925725	4.40E-05	(Dominant)	1.54	[1.25-1.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3115569-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32224319	rs3115568	G	T	rs3115568	24925725	4.42E-05	(Dominant)	1.54	[1.25-1.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3115568-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32224489	rs6908927	G	A	rs6908927	24925725	4.40E-05	(Dominant)	1.54	[1.25-1.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs6908927-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32234015	rs3132928	G	A	rs3132928	24925725	7.99E-05	(Dominant)	1.5	[1.22-1.84]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3132928-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32235895	rs3132931	T	G	rs3132931	24925725	5.73E-05	(Dominant)	1.52	[1.24-1.87]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3132931-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32236142	rs3115560	G	A	rs3115560	24925725	5.75E-05	(Dominant)	1.52	[1.24-1.87]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3115560-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32238013	rs3096673	T	C	rs3096673	24925725	5.76E-05	(Dominant)	1.52	[1.24-1.87]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3096673-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32238680	rs3132945	A	G	rs3132945	24925725	5.76E-05	(Dominant)	1.52	[1.24-1.87]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3132945-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32243129	rs1559873	T	C	rs1559873	24925725	5.29E-05	(Dominant)	1.53	[1.24-1.88]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs1559873-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32243155	rs1559874	G	A	rs1559874	24925725	5.22E-05	(Dominant)	1.53	[1.24-1.88]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs1559874-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32244627	rs3130340	T	C	rs3130340	24871463	7.20E-10	NA	1.6	[1.71-1.49]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3130340-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32244627	rs3130340	T	C	rs3130340	24925725	5.15E-05	(Dominant)	1.53	[1.24-1.88]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3130340-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32245827	rs3115553	C	T	rs3115553	24871463	8.70E-10	NA	1.6	[1.71-1.49]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3115553-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32245827	rs3115553	C	T	rs3115553	24925725	4.91E-05	(Dominant)	1.53	[1.25-1.88]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3115553-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32256418	rs9268142	T	C	rs9268142	24925725	5.19E-05	(Dominant)	1.53	[1.24-1.88]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9268142-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32256473	rs9268143	A	G	rs9268143	24925725	5.19E-05	(Dominant)	1.53	[1.24-1.88]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9268143-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32257199	rs9268144	T	C	rs9268144	24925725	1.11E-05	(Dominant)	1.63	[1.31-2.03]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9268144-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32260350	rs6935269	T	C	rs6935269	24871463	5.00E-10	NA	1.6	[1.72-1.50]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs6935269-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32260350	rs6935269	T	C	rs6935269	24925725	3.43E-05	(Dominant)	1.54	[1.25-1.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs6935269-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32260350	rs6935269	T	C	rs6935269	pha002867	1.42E-05	phs000202	phs000216	1.63	[1.31-2.04]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	C	C6orf10	nearGene-3
6	32261252	rs7775397	T	G	rs7775397	18204446	8.00E-47	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
6	32261252	rs7775397	T	G	rs7775397	24871463	1.80E-17	NA	2.17	NA	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7775397-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32261252	rs7775397	T	G	rs7775397	24925725	1.16E-05	(Dominant)	1.63	[1.31-2.03]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs7775397-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32261507	rs3749966	T	C	rs3749966	24925725	4.30E-05	(Dominant)	1.53	[1.25-1.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3749966-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32268080	rs7750783	C	T	rs7750783	24925725	3.77E-05	(Dominant)	1.54	[1.25-1.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs7750783-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32268701	rs6909427	T	G	rs6909427	24925725	3.77E-05	(Dominant)	1.54	[1.25-1.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs6909427-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32270283	rs7775592	G	A	rs7775592	24925725	3.76E-05	(Dominant)	1.54	[1.25-1.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs7775592-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32270875	rs9268163	C	T	rs9268163	24925725	3.57E-05	(Dominant)	1.54	[1.25-1.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9268163-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32271807	rs3864300	G	T	rs3864300	24925725	3.40E-05	(Dominant)	1.54	[1.25-1.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3864300-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32271955	rs3864301	C	T	rs3864301	24925725	3.40E-05	(Dominant)	1.54	[1.25-1.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3864301-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32272711	rs9268170	A	G	rs9268170	24925725	3.40E-05	(Dominant)	1.54	[1.25-1.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9268170-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32273765	rs6457536	A	G	rs6457536	24871463	2.20E-09	NA	1.59	[1.70-1.48]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs6457536-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32273765	rs6457536	A	G	rs6457536	24925725	6.68E-05	(Dominant)	1.52	[1.24-1.87]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs6457536-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32274079	rs9268176	C	T	rs9268176	24925725	4.95E-05	(Dominant)	1.53	[1.24-1.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9268176-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32274882	rs9268177	C	A	rs9268177	24925725	9.08E-06	(Dominant)	1.64	[1.31-2.04]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9268177-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32275027	rs7341300	C	T	rs7341300	24925725	3.32E-05	(Dominant)	1.54	[1.25-1.90]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs7341300-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32275194	rs7341328	G	A	rs7341328	24925725	3.32E-05	(Dominant)	1.54	[1.25-1.90]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs7341328-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32276009	rs9268181	T	C	rs9268181	24925725	3.32E-05	(Dominant)	1.54	[1.25-1.90]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9268181-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32276027	rs9268182	T	G	rs9268182	24925725	3.32E-05	(Dominant)	1.54	[1.25-1.90]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9268182-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32277934	rs9268197	C	A	rs9268197	24925725	3.32E-05	(Dominant)	1.54	[1.25-1.90]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9268197-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32278670	rs9268200	C	T	rs9268200	24925725	3.32E-05	(Dominant)	1.54	[1.25-1.90]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9268200-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32278792	rs3864302	C	T	rs3864302	24925725	3.32E-05	(Dominant)	1.54	[1.25-1.90]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3864302-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32279284	rs9268201	G	A	rs9268201	24925725	3.32E-05	(Dominant)	1.54	[1.25-1.90]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9268201-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32279340	rs9268202	C	T	rs9268202	24925725	3.32E-05	(Dominant)	1.54	[1.25-1.90]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9268202-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32279500	rs9268204	C	T	rs9268204	24925725	3.32E-05	(Dominant)	1.54	[1.25-1.90]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9268204-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32279622	rs6934429	G	T	rs6934429	24925725	3.32E-05	(Dominant)	1.54	[1.25-1.90]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs6934429-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32280462	rs9268207	C	T	rs9268207	24925725	3.25E-05	(Dominant)	1.54	[1.26-1.90]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9268207-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32280591	rs9268208	T	C	rs9268208	24925725	9.40E-06	(Dominant)	1.64	[1.31-2.04]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9268208-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32280620	rs9268209	A	C	rs9268209	24925725	2.52E-05	(Dominant)	1.58	[1.28-1.95]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9268209-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32281360	rs1018434	T	C	rs1018434	24925725	3.96E-05	(Dominant)	1.54	[1.25-1.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs1018434-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32281621	rs3864303	A	G	rs3864303	24925725	4.08E-05	(Dominant)	1.54	[1.25-1.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3864303-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32281676	rs1018431	G	A	rs1018431	24925725	4.08E-05	(Dominant)	1.54	[1.25-1.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs1018431-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32281688	rs1018430	C	T	rs1018430	24925725	4.08E-05	(Dominant)	1.54	[1.25-1.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs1018430-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32281958	rs2069026	C	T	rs2069026	24925725	4.05E-05	(Dominant)	1.54	[1.25-1.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2069026-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32282019	rs6903871	A	C	rs6903871	24925725	4.08E-05	(Dominant)	1.54	[1.25-1.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs6903871-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32282979	rs6909790	A	G	rs6909790	24925725	4.22E-05	(Dominant)	1.54	[1.25-1.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs6909790-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32283494	rs6915455	G	A	rs6915455	24925725	8.16E-05	(Dominant)	1.52	[1.23-1.88]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs6915455-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32283699	rs9268218	A	G	rs9268218	24925725	4.51E-05	(Dominant)	1.54	[1.25-1.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9268218-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G,A
6	32284108	rs9268219	T	G	rs9268219	24925725	9.83E-06	(Dominant)	1.63	[1.31-2.03]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9268219-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32290208	rs9268235	C	T	rs9268235	24925725	1.03E-05	(Dominant)	1.63	[1.31-2.03]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9268235-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32291643	rs521828	C	T	rs521828	24925725	4.45E-06	(Dominant)	1.59	[1.29-1.95]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs521828-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32298814	rs3129949	C	A	rs3129949	24925725	1.36E-05	(Dominant)	1.55	[1.26-1.91]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3129949-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32299822	rs1003878	G	A	rs1003878	24871463	6.60E-07	NA	1.46	[1.56-1.36]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1003878-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32299822	rs1003878	G	A	rs1003878	24925725	1.72E-05	(Dominant)	1.54	[1.26-1.90]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs1003878-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32306090	rs9368716	G	A	rs9368716	24925725	2.21E-05	(Additive)	1.39	[1.61-1.61]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32317635	rs2076537	G	A	rs2076537	24871463	4.90E-04	NA	1.28	[1.36-1.20]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2076537-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32325562	rs2395149	G	A	rs2395149	24925725	1.22E-05	(Dominant)	1.62	[1.30-2.02]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2395149-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32333827	rs3129927	A	C	rs3129927	24925725	1.24E-05	(Dominant)	1.62	[1.30-2.02]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3129927-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32336766	rs3129939	A	G	rs3129939	24871463	6.90E-11	NA	1.72	[1.85-1.60]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3129939-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32338695	rs3129943	A	G	rs3129943	24871463	3.80E-07	NA	1.45	[1.55-1.36]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3129943-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32338695	rs3129943	A	G	rs3129943	24925725	3.60E-06	(Dominant)	1.58	[1.29-1.95]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3129943-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32339076	rs2050190	A	G	rs2050190	24871463	2.00E-05	NA	1.32	[1.40-1.24]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2050190-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32339647	rs2050189	T	C	rs2050189	24871463	2.00E-06	NA	1.43	[1.53-1.34]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2050189-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32341353	rs9268402	G	A	rs9268402	24925725	3.47E-05	(Additive)	1.43	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32345689	rs2894254	T	G	rs2894254	24925725	3.25E-05	(Dominant)	1.58	[1.27-1.97]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2894254-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32354428	rs4424066	A	G	rs4424066	24871463	7.70E-05	NA	1.28	[1.37-1.20]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs4424066-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32354428	rs4424066	A	G	rs4424066	24925725	7.34E-05	(Additive)	1.39	[1.61-1.61]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32355683	rs9268473	A	G	rs9268473	24925725	6.24E-05	(Additive)	1.39	[1.61-1.61]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32358270	rs3117099	G	A	rs3117099	24925725	5.44E-05	(Dominant)	1.53	[1.24-1.89]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3117099-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32361111	rs3817973	C	T	rs3817973	24871463	8.50E-05	NA	1.28	[1.36-1.20]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3817973-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32363215	rs1980493	T	C	rs1980493	24871463	1.70E-12	NA	1.81	[1.95-1.68]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1980493-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32363527	rs2076533	C	T	rs2076533	24925725	6.60E-05	(Additive)	1.39	[1.61-1.61]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32363816	rs2076530	T	C	rs2076530	24871463	1.30E-04	NA	1.28	[1.36-1.20]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2076530-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32368087	rs3817963	T	C	rs3817963	24871463	5.10E-04	NA	1.3	[1.40-1.22]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3817963-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32371619	rs3793126	A	G	rs3793126	24925725	8.33E-05	(Dominant)	1.59	[1.96-1.96]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32375330	rs9268493	G	A	rs9268493	24925725	9.20E-05	(Dominant)	1.59	[1.96-1.96]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32375352	rs9268494	A	C	rs9268494	24925725	9.25E-05	(Dominant)	1.59	[1.96-1.96]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32375695	rs9268499	G	A	rs9268499	24925725	9.49E-05	(Dominant)	1.59	[1.96-1.96]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A,G
6	32380208	rs3129963	A	G	rs3129963	24871463	1.40E-12	NA	1.77	[1.90-1.64]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3129963-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32380208	rs3129963	A	G	rs3129963	pha002867	6.53E-06	phs000202	phs000216	1.74	[1.37-2.22]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	A	NA	NA
6	32380262	rs6932542	A	G	rs6932542	24871463	1.50E-07	NA	1.42	[1.52-1.33]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs6932542-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32381939	rs743862	T	C	rs743862	24871463	9.40E-04	NA	1.33	[1.42-1.25]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs743862-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32384721	rs9268542	A	G	rs9268542	24871463	1.40E-05	NA	1.42	[1.52-1.33]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9268542-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32389648	rs3135363	A	G	rs3135363	24871463	6.00E-04	NA	1.24	[1.32-1.16]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3135363-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32392877	rs3135353	C	T	rs3135353	pha002867	1.43E-05	phs000202	phs000216	1.77	[1.37-2.29]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	NA	NA
6	32396506	rs3129847	A	G	rs3129847	24925725	7.28E-05	(Dominant)	1.57	[1.28-1.94]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3129847-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32396615	rs3135342	G	T	rs3135342	24925725	7.24E-05	(Dominant)	1.57	[1.28-1.94]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3135342-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32398872	rs3135340	T	G	rs3135340	24925725	7.21E-05	(Dominant)	1.57	[1.28-1.94]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3135340-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32398975	rs4988822	C	T	rs4988822	24925725	7.21E-05	(Dominant)	1.57	[1.28-1.94]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs4988822-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32399337	rs3129856	T	C	rs3129856	24925725	5.27E-05	(Dominant)	1.58	[1.27-1.97]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3129856-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32399842	rs2395172	T	C	rs2395172	24925725	6.80E-05	(Dominant)	1.57	[1.28-1.94]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2395172-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32400520	rs3129858	G	A	rs3129858	24925725	6.70E-05	(Dominant)	1.57	[1.28-1.94]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3129858-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32403655	rs983561	T	A,C,G	rs983561	24925725	7.62E-05	(Dominant)	1.56	[1.27-1.92]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs983561-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32404135	rs5000563	A	G	rs5000563	24925725	7.94E-05	(Dominant)	1.56	[1.27-1.92]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs5000563-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32404878	rs2395174	T	G	rs2395174	24871463	8.50E-08	NA	1.49	[1.59-1.40]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2395174-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32404878	rs2395174	T	G	rs2395174	24925725	8.65E-05	(Dominant)	1.56	[1.27-1.91]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2395174-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32408497	rs3135394	A	G	rs3135394	24925725	7.11E-05	(Dominant)	1.57	[1.26-1.96]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs3135394-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32411523	rs2239804	T	C	rs2239804	24871463	1.50E-09	NA	1.58	[1.68-1.47]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2239804-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32411523	rs2239804	T	C	rs2239804	pha002867	1.89E-06	phs000202	phs000216	1.61	[1.32-1.96]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	A	HLA-DRA	intron
6	32411646	rs7192	T	G	rs7192	18204446	6.20E-40	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
6	32411646	rs7192	T	G	rs7192	24871463	8.00E-15	NA	1.71	[1.82-1.61]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7192-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32411646	rs7192	T	G	rs7192	pha002867	5.43E-10	phs000202	phs000216	1.04	[0.85-1.27]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	HLA-DRA	missense
6	32414273	rs3129890	T	C	rs3129890	24871463	6.60E-09	NA	1.49	[1.59-1.39]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3129890-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	NA
6	32418710	rs9268766	C	A	rs9296032	24925725	1.13E-05	(Dominant)	1.78	[1.42-2.23]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9296032-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32427789	rs9268832	T	C	rs9268832	24871463	7.20E-15	NA	1.71	[1.82-1.61]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9268832-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32427789	rs9268832	T	C	rs9268832	pha002867	3.14E-10	phs000202	phs000216	1.9	[1.56-2.32]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	T	NA	NA
6	32433167	rs2395185	G	T	rs2395185	24871463	1.10E-04	NA	1.34	[1.43-1.25]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2395185-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32570400	rs2516049	T	C	rs2516049	24871463	7.00E-04	NA	1.27	[1.36-1.19]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2516049-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32573991	rs9270984	T	G	rs9270984	23273568	5.00E-24	NA	1.73	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9270984-T	Meta-Analysis	Research Support, Non-U.S. Gov't	G
6	32575369	rs9271055	G	T	rs9271055	23273568	7.40E-24	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	T
6	32576478	rs9271100	T	C	rs9271100	19838193	1.00E-12	NA	1.9	[1.59-2.27]	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	T	NA
6	32576478	rs9271100	T	C	rs9271100	23273568	1.00E-22	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	T
6	32577380	rs660895	A	G	rs660895	23273568	1.30E-13	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	A
6	32586854	rs9271366	G	A	rs9271366	23273568	2.40E-18	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	A
6	32605884	rs2187668	C	T	rs2187668	18204098	3.00E-21	NA	NA	NA	1,311 cases; 3,340 controls	NOPOP(4651)	ALL(4651)	NOPOP(4651)	ALL(4651)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2187668-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32605884	rs2187668	C	T	rs2187668	21408207	6.00E-28	NA	2.23	[1.94-2.57]	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2187668-A	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
6	32605884	rs2187668	C	T	rs2187668	24871463	7.70E-17	NA	2.04	[2.21-1.88]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2187668-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32605884	rs2187668	C	T	rs2187668	pha002867	7.27E-07	phs000202	phs000216	1.96	[1.50-2.56]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	HLA-DQA1	intron
6	32651117	rs9275141	T	G	rs9275141	24871463	4.30E-10	NA	1.56	[1.66-1.47]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9275141-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32651117	rs9275141	T	G	rs9275141	24925725	6.80E-05	(Additive)	1.41	[1.64-1.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32651117	rs9275141	T	G	rs9275141	pha002867	7.42E-06	phs000202	phs000216	1.56	[1.28-1.89]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	NA	NA
6	32658310	rs9469220	G	A	rs9469220	24925725	6.02E-05	(Recessive)	1.82	[2.44-2.44]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32658715	rs2858330	T	C	rs2858330	24925725	3.59E-05	(Additive)	1.41	[1.64-1.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32659158	rs5002702	G	A	rs5002702	24925725	8.16E-05	(Additive)	1.37	[1.59-1.59]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32659645	rs2856674	A	G	rs2856674	24925725	8.79E-06	(Dominant)	1.6	[1.29-1.99]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2856674-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32659878	rs9275224	A	G	rs9275224	24925725	7.23E-05	(Additive)	1.37	[1.59-1.59]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G,A
6	32660051	rs4713582	T	C	rs4713582	24925725	7.99E-05	(Additive)	1.37	[1.59-1.59]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32660153	rs4713583	T	G	rs4713583	24925725	7.97E-05	(Additive)	1.37	[1.59-1.59]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32663289	rs9275292	C	A	rs9275292	24925725	7.29E-05	(Additive)	1.39	[1.59-1.59]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32663391	rs9275295	A	G	rs9275295	24925725	7.29E-05	(Additive)	1.39	[1.59-1.59]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32663564	rs5000634	A	G	rs5000634	24871463	2.60E-06	NA	1.43	[1.52-1.33]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs5000634-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32663851	rs6457617	C	T	rs6457617	24925725	6.73E-05	(Additive)	1.39	[1.61-1.61]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32664458	rs2647012	T	C	rs2647012	21408207	8.00E-06	case-only	1.38	[1.20-1.59]	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2647012-A	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
6	32664458	rs2647012	T	C	rs2647012	24871463	1.20E-14	NA	1.71	[1.81-1.61]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2647012-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32664458	rs2647012	T	C	rs2647012	24925725	3.00E-07	(Additive)	1.52	[1.30-1.75]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32664458	rs2647012	T	C	rs2647012	pha002867	2.19E-07	phs000202	phs000216	1.69	[1.39-2.07]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	NA	NA
6	32664880	rs2647003	T	G	rs2647003	24925725	3.62E-07	(Additive)	1.49	[1.72-1.72]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32664960	rs9357152	A	G	rs9357152	24871463	1.80E-09	NA	1.64	[1.78-1.52]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9357152-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32666526	rs1794282	C	T	rs1794282	18204446	2.60E-46	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
6	32666526	rs1794282	C	T	rs1794282	24871463	9.60E-18	NA	2.17	NA	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1794282-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32666526	rs1794282	C	T	rs1794282	24925725	2.77E-05	(Dominant)	1.6	[1.28-2.01]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs1794282-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32666526	rs1794282	C	T	rs1794282	pha002867	2.21E-07	phs000202	phs000216	2.12	[1.59-2.81]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	NA	NA
6	32667280	rs2647040	A	G	rs2647040	24925725	6.09E-07	(Additive)	1.49	[1.72-1.72]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32667910	rs2647044	G	A	rs2647044	24925725	7.75E-06	(Dominant)	1.61	NA	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2647044-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32668323	rs2858310	G	A	rs2858310	24925725	7.67E-07	(Additive)	1.49	[1.72-1.72]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32668336	rs2647046	A	C	rs2647046	24925725	8.04E-07	(Additive)	1.49	[1.72-1.72]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32669767	rs2647050	T	C	rs2647050	24871463	7.60E-13	NA	1.69	[1.81-1.59]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2647050-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32670255	rs2856718	C	T	rs2856718	24871463	1.10E-12	NA	1.69	[1.81-1.59]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2856718-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32674649	rs9275517	A	G	rs9275517	24925725	1.92E-06	(Additive)	1.47	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A,G
6	32674952	rs9275521	T	C	rs9275521	24925725	1.28E-06	(Additive)	1.47	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32675109	rs9275524	T	C	rs9275524	24925725	2.09E-06	(Additive)	1.47	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32677669	rs536833125	C	T	rs9380318	24925725	2.11E-06	(Additive)	1.47	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32677938	rs9275565	T	C	rs9394114	24925725	2.09E-06	(Additive)	1.47	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32678477	rs3998157	C	A	rs3998157	24925725	2.09E-06	(Additive)	1.47	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32678999	rs9275572	A	G	rs9275572	18204446	7.00E-48	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
6	32678999	rs9275572	A	G	rs9275572	24871463	5.00E-16	NA	1.74	[1.64-1.85]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9275572-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32678999	rs9275572	A	G	rs9275572	24925725	2.45E-06	(Additive)	1.45	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32678999	rs9275572	A	G	rs9275572	pha002867	1.37E-09	phs000202	phs000216	1.84	[1.51-2.23]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	NA	NA
6	32679326	rs9275576	C	T	rs9275576	24925725	8.33E-06	(Dominant)	1.62	[1.30-2.02]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9275576-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32680970	rs7745656	G	T	rs7745656	24871463	1.30E-08	NA	1.61	[1.72-1.49]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7745656-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32681277	rs2858331	A	G	rs2858331	24871463	8.60E-11	NA	1.61	[1.72-1.52]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2858331-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32681631	rs9275596	C	T	rs9275596	24925725	2.01E-06	(Additive)	1.48	[1.28-1.72]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9275596-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T,C
6	32723917	rs7756516	C	T	rs7756516	24871463	8.40E-05	NA	1.34	[1.42-1.27]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7756516-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32725193	rs2301271	A	G	rs2301271	21408207	2.00E-12	NA	1.47	[1.32-1.63]	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2301271-T	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
6	32725193	rs2301271	A	G	rs2301271	24871463	7.70E-08	NA	1.47	[1.57-1.39]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2301271-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32730012	rs7453920	A	G	rs7453920	24871463	8.70E-08	NA	1.47	[1.56-1.39]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7453920-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32730086	rs2051549	G	A	rs2051549	23053960	3.00E-22	NA	NA	NA	1,527 European ancestry cases; 3,421 European ancestry controls	European(4948)	ALL(4948)	EUR(4948)	ALL(4948)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	T
6	32730086	rs2051549	G	A	rs2051549	24871463	5.40E-07	NA	1.45	[1.54-1.37]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2051549-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32731258	rs1573649	G	A	rs1573649	24871463	5.50E-04	NA	1.31	[1.39-1.23]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1573649-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32732210	rs6903130	G	A	rs6903130	24871463	8.10E-04	NA	1.29	[1.37-1.22]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs6903130-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32747502	rs4947258	A	G	rs9276665	24925725	2.55E-05	(Dominant)	1.61	[1.29-2.02]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9276665-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32747790	rs4947349	G	T	rs4947349	24925725	7.91E-05	(Dominant)	1.59	[1.26-1.99]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs4947349-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	NA
6	32751962	rs9276689	C	T	rs9276689	24925725	7.89E-05	(Dominant)	1.59	[1.26-1.99]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9276689-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32755290	rs7762279	T	C	rs7762279	24871463	3.10E-12	NA	1.93	[2.10-1.77]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7762279-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32755290	rs7762279	T	C	rs7762279	24925725	3.72E-05	(Dominant)	1.6	NA	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs7762279-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32755290	rs7762279	T	C	rs7762279	pha002867	2.40E-06	phs000202	phs000216	2.02	[1.51-2.70]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	T	NA	NA
6	32758394	rs7758736	G	A	rs7758736	24871463	1.60E-07	NA	1.53	[1.65-1.42]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7758736-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32758394	rs7758736	G	A	rs7758736	pha002867	3.07E-05	phs000202	phs000216	1.67	[1.31-2.13]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	NA	NA
6	32765585	rs9276731	G	T	rs9276731	24925725	3.04E-05	(Dominant)	1.6	[1.28-2.01]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9276731-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	32783086	rs7383287	A	G	rs7383287	24871463	1.80E-06	NA	1.39	[1.49-1.30]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7383287-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	32796685	rs241448	A	G	rs241448	24871463	5.50E-04	NA	1.34	[1.44-1.23]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs241448-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	32913246	rs1480380	C	T	rs1480380	24871463	6.30E-07	NA	1.7	[1.87-1.54]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1480380-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	32955976	rs188245	A	G	rs188245	24871463	7.00E-04	NA	1.28	[1.36-1.20]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs188245-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	33179689	rs2854028	C	T	rs2854028	24871463	8.90E-05	NA	1.4	[1.51-1.30]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2854028-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	33326434	rs9278019	C	T	rs9278019	24871463	6.60E-04	NA	1.39	[1.53-1.27]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9278019-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	33561962	rs6457733	T	C	rs6457733	18219441	5.80E-04	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	C,T	NA
6	33562709	rs10947410	T	C	rs10947410	18219441	5.80E-04	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	T	NA
6	33564296	rs12206050	A	T	rs12206050	18219441	1.68E-05	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	A	NA
6	33588147	rs3748079	C	T	rs3748079	18219441	1.11E-08	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	G	MNF1
6	33588147	rs3748079	C	T	rs3748079	18219441	3.60E-04	Grave's disease	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	G	MNF1
6	33588610	rs9368768	G	A	rs9368768	18219441	8.60E-04	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	G	MNF1
6	33593687	rs6903502	C	G	rs6903502	18219441	1.10E-04	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	C	ITPR3
6	33606523	rs4713646	C	T	rs4713646	18219441	4.10E-04	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	C,T	ITPR3
6	33611278	rs10947421	G	T	rs10947421	18219441	1.10E-04	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	G	ITPR3
6	33613344	rs9357162	G	A	rs9357162	18219441	3.10E-04	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	G	ITPR3
6	33613367	rs9394158	G	T	rs9394158	18219441	2.60E-04	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	G	ITPR3
6	33614127	rs6935686	C	T	rs6935686	18219441	1.25E-04	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	C	ITPR3
6	33617464	rs6457738	C	T	rs6457738	18219441	2.40E-04	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	T,C	ITPR3
6	33617924	rs9348923	C	T	rs9348923	18219441	8.90E-04	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	C	ITPR3
6	33618162	rs9394159	A	T	rs9394159	18219441	9.48E-06	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	A	ITPR3
6	33619184	rs9366826	G	C	rs9366826	18219441	3.00E-04	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	C	ITPR3
6	33622436	rs62407648	C	G	rs62407648	18219441	1.62E-06	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	C	ITPR3
6	33624902	rs999942	G	C	rs999942	18219441	2.10E-04	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	C	ITPR3
6	33630624	rs2296339	C	T	rs2296339	18219441	8.31E-05	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	G	ITPR3
6	33636660	rs2296336	C	G	rs2296336	18219441	3.20E-04	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	G	ITPR3
6	33638180	rs2229634	C	T	rs2229634	18219441	4.20E-04	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	C	ITPR3
6	33641379	rs1803831	T	C	rs1803831	18219441	1.70E-04	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	T	ITPR3
6	33645115	rs2274197	G	T	rs2274197	18219441	4.40E-04	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	C	ITPR3
6	33650743	rs2296329	A	G	rs2296329	18219441	4.36E-05	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	T	ITPR3
6	33651129	rs942636	C	T	rs942636	18219441	1.98E-06	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	C	ITPR3
6	33695130	rs2281830	G	A	rs2281830	18219441	2.70E-04	Systemic lupus erythematosus (SLE)	NA	NA	94 Japanese cases; 535 Japanese controls	Japanese(629)	ALL(629)	ASN(629)	ALL(629)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Comparative Study	G	IP6K3
6	34551912	rs205284	C	T	rs205284	23273568	2.80E-12	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	G
6	34563164	rs205262	A	G	rs205262	24871463	8.10E-06	NA	1.3	[1.39-1.22]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs205262-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	34604335	rs7764921	C	A	rs7764921	23273568	8.70E-12	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	C
6	34714322	rs2764208	A	G	rs2764208	24871463	7.00E-06	NA	1.28	[1.20-1.36]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2764208-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	34739726	rs9462015	T	G	rs9462015	24871463	7.80E-06	NA	1.28	[1.36-1.20]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9462015-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G,T
6	34791027	rs7774697	A	G	rs7774697	24871463	9.40E-06	NA	1.28	[1.36-1.20]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7774697-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	34797241	rs9462027	G	A	rs9462027	24871463	5.00E-06	NA	1.32	[1.40-1.23]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9462027-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	34823187	rs3734266	T	C	rs3734266	23273568	1.00E-12	NA	1.56	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3734266-G	Meta-Analysis	Research Support, Non-U.S. Gov't	A
6	34831856	rs13205210	T	C	rs13205210	23273568	1.20E-11	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	T
6	34840398	rs3734261	G	A	rs3734261	23273568	6.20E-12	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	C
6	34904092	rs847852	G	A	rs847852	24871463	4.70E-06	NA	1.31	[1.39-1.23]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs847852-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	34904584	rs847851	G	A	rs847851	24871463	3.80E-05	NA	1.23	[1.31-1.15]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs847851-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	34927280	rs1535001	A	G	rs1535001	23740937	3.00E-07	NA	1.18	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
6	34990968	rs1880090	C	T	rs1880090	24871463	1.40E-04	NA	1.25	[1.34-1.18]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1880090-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	35003603	rs2820232	G	T	rs2820232	24871463	3.50E-04	NA	1.24	[1.32-1.16]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2820232-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	35009295	rs2820223	T	C	rs2820223	20659327	3.50E-04	NA	NA	NA	20 African American cases; 36 European American cases; 32 Hispanic American cases; 16 Asian American cases; selected for extremes of serum IFN-alpha activity	Asian American(16)	African American(20)	Hispanic American(32)	European American(36)	ALL(104)	ASN(16)	HIS(32)	AFR(20)	EUR(36)	ALL(104)	Systemic lupus erythematosus(serologic and cytokine profiles in serum)	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA
6	36524075	rs7741729	A	G	rs7741729	24871463	2.10E-04	NA	1.44	[1.60-1.30]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7741729-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	41254741	rs3789204	G	T	rs3789204	24871463	5.50E-04	NA	1.3	[1.39-1.21]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs3789204-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	90549490	rs292263	T	C	rs292263	24925725	7.89E-05	(Dominant)	1.82	[2.38-2.38]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	90592223	rs441577	T	C	rs441577	24925725	6.32E-05	(Dominant)	1.89	[2.44-2.44]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
6	91015039	rs12529935	C	T	rs12529935	23273568	9.00E-06	NA	1.35	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs12529935-C	Meta-Analysis	Research Support, Non-U.S. Gov't	T
6	102849336	rs1338657	C	T	rs1338657	24925725	6.82E-05	(Recessive)	1.79	[2.38-2.38]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
6	106568034	rs548234	C	T	rs548234	19838193	5.00E-12	NA	1.25	[1.17-1.33]	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs548234-G	Research Support, Non-U.S. Gov't	T	NA
6	106568034	rs548234	C	T	rs548234	23273568	5.20E-06	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	T
6	106582920	rs742108	G	A	rs742108	23273568	4.00E-06	NA	1.24	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs742108-T	Meta-Analysis	Research Support, Non-U.S. Gov't	C
6	106588806	rs6568431	A	C	rs6568431	18204446	1.74E-08	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
6	106588806	rs6568431	A	C	rs6568431	23273568	6.60E-06	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	C
6	106598023	rs1040411	G	A	rs1040411	23273568	6.10E-05	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	G
6	106685195	rs3827644	G	C	rs3827644	23740937	5.00E-07	NA	1.15	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
6	106727215	rs3804333	C	T	rs3804333	24871463	2.40E-05	NA	NA	NA	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
6	106734040	rs633724	C	T	rs633724	23273568	4.40E-04	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	T
6	106764866	rs573775	G	A	rs573775	18204446	1.36E-07	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
6	138126278	rs774628	T	C	rs774628	23273568	4.20E-05	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	G
6	138130479	rs619796	A	G	rs619796	23273568	9.40E-06	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	C
6	138132516	rs10499197	T	G	rs10499197	23740937	2.00E-09	NA	1.64	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
6	138147048	rs670369	C	T	rs670369	23273568	1.60E-06	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	T
6	138190154	rs3757173	A	G	rs3757173	23273568	7.20E-09	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	C
6	138195723	rs5029939	C	G	rs5029939	19165918	3.00E-12	NA	2.28	NA	431 cases; 2,155 controls	NOPOP(2586)	ALL(2586)	NOPOP(2586)	ALL(2586)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
6	138196066	rs2230926	T	G	rs2230926	19838193	1.00E-17	NA	1.72	[1.52-1.94]	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2230926-C	Research Support, Non-U.S. Gov't	T	TNFAIP3
6	138196066	rs2230926	T	G	rs2230926	23273568	1.00E-13	NA	2.71	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2230926-G	Meta-Analysis	Research Support, Non-U.S. Gov't	T
6	142568305	rs2782527	C	T	rs2782527	23740937	3.18E-06	NA	1.35	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
7	8174587	rs4725072	A	C	rs4725072	23740937	1.55E-05	SSc	1.22	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
7	8187094	rs10156091	T	C	rs10156091	18204446	1.90E-07	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
7	17475607	rs2034684	T	C	rs2034684	23740937	3.66E-06	NA	1.23	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
7	28189411	rs1635852	T	C	rs1635852	23740937	2.00E-08	NA	1.14	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
7	32573570	rs7805536	T	C	rs7805536	22291604	1.30E-04	NA	NA	NA	891 Japanese ancestry cases; 3,384 Japanese ancestry controls	Japanese(4275)	ALL(4275)	ASN(4275)	ALL(4275)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	T	AVL9
7	33816709	rs1362927	G	A	rs1362927	pha002867	2.87E-05	phs000202	phs000216	2.04	[1.46-2.84]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	NA	NA
7	34355100	rs1419842	C	T	rs1419842	17911428	7.00E-05	NA	NA	NA	51 cases; 114 controls	NOPOP(165)	ALL(165)	NOPOP(165)	ALL(165)	Lupus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	NA	C	NA
7	43336243	rs886550	G	T	rs886550	pha002867	1.17E-05	phs000202	phs000216	2.68	[1.72-4.16]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	HECW1	intron
7	50249013	rs11761913	C	T	rs11761913	23273568	1.40E-05	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	C
7	50269672	rs1456893	G	A	rs1456893	23273568	1.10E-04	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	A
7	50278585	rs12669163	A	C	rs12669163	23273568	1.00E-04	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	A
7	50305863	rs4917014	T	G	rs4917014	19838193	3.00E-23	NA	1.39	[1.30-1.47]	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs4917014-A	Research Support, Non-U.S. Gov't	T	NA
7	50305863	rs4917014	T	G	rs4917014	23273568	6.70E-06	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	T
7	50313352	rs10276619	G	A	rs10276619	19838193	1.19E-16	NA	NA	NA	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	A	NA
7	50313352	rs10276619	G	A	rs10276619	23273568	6.00E-06	NA	1.18	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs10276619-G	Meta-Analysis	Research Support, Non-U.S. Gov't	A
7	54767639	rs1569256	C	T	rs1569256	24871463	4.00E-06	NA	1.35	[1.44-1.27]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1569256-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C,T
7	54783373	rs6946131	T	C	rs6946131	23740937	4.88E-06	NA	1.2	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
7	54783373	rs6946131	T	C	rs6946131	24871463	2.00E-06	NA	1.39	[1.30-1.47]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs6946131-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
7	75173180	rs1167796	A	G	rs1167796	19838193	2.00E-08	NA	1.2	[1.12-1.28]	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1167796-G	Research Support, Non-U.S. Gov't	A	HIP1
7	75173180	rs1167796	A	G	rs1167796	23273568	8.80E-05	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	A
7	75175909	rs1167797	T	C	rs1167797	19838193	1.77E-07	NA	NA	NA	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	T	HIP1
7	76499312	rs7798157	T	C	rs7798157	17911428	3.00E-05	NA	NA	NA	51 cases; 114 controls	NOPOP(165)	ALL(165)	NOPOP(165)	ALL(165)	Lupus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	NA	C	NA
7	92764982	rs1133906	C	T	rs1133906	23740937	2.00E-07	lcSSc	1.21	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
7	92764982	rs11538791	C	CC,CT	rs1133906	23740937	2.00E-07	lcSSc	1.21	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
7	103703322	rs2891652	T	G	rs2891652	23740937	2.33E-06	NA	1.46	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
7	115708565	rs1464776	T	G	rs1464776	pha002867	1.55E-06	phs000202	phs000216	1.67	[1.36-2.06]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	T	NA	NA
7	128568960	rs729302	A	C	rs729302	18204446	2.00E-10	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
7	128568960	rs729302	A	C	rs729302	19838193	1.45E-04	NA	NA	NA	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	C	NA
7	128568960	rs729302	A	C	rs729302	21408207	7.90E-07	NA	NA	NA	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
7	128568960	rs729302	A	C	rs729302	23053960	4.00E-08	NA	1.29	[1.41-1.18]	1,527 European ancestry cases; 3,421 European ancestry controls	European(4948)	ALL(4948)	EUR(4948)	ALL(4948)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs729302-A	Meta-Analysis	Research Support, Non-U.S. Gov't	C
7	128568960	rs729302	A	C	rs729302	23273568	1.00E-09	NA	1.47	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs729302-A	Meta-Analysis	Research Support, Non-U.S. Gov't	C
7	128573967	rs4728142	G	A	rs4728142	19838193	8.00E-19	NA	1.43	[1.32-1.54]	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs4728142-A	Research Support, Non-U.S. Gov't	G,A	NA
7	128573967	rs4728142	G	A	rs4728142	21408207	9.90E-12	NA	NA	NA	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
7	128573967	rs4728142	G	A	rs4728142	23273568	3.00E-09	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	G,A
7	128573967	rs4728142	G	A	rs4728142	24871463	7.00E-10	NA	1.45	[1.37-1.55]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs4728142-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G,A
7	128573967	rs4728142	G	A	rs4728142	pha002867	7.30E-07	phs000202	phs000216	1.64	[1.35-2.00]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G,A	NA	NA
7	128584084	rs7808907	T	C	rs7808907	21408207	5.40E-09	NA	NA	NA	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
7	128584084	rs7808907	T	C	rs7808907	24871463	1.40E-08	NA	1.39	[1.47-1.30]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7808907-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
7	128584084	rs7808907	T	C	rs7808907	pha002867	6.08E-06	phs000202	phs000216	1.56	[1.28-1.89]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	C	IRF5	intron
7	128594183	rs10488631	T	C	rs10488631	18204098	2.00E-11	NA	NA	NA	1,311 cases; 3,340 controls	NOPOP(4651)	ALL(4651)	NOPOP(4651)	ALL(4651)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs10488631-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
7	128594183	rs10488631	T	C	rs10488631	21408207	7.00E-18	NA	1.92	[1.66-2.22]	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs10488631-C	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
7	128594183	rs10488631	T	C	rs10488631	24871463	2.00E-13	NA	1.83	[1.68-1.99]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs10488631-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
7	128594183	rs10488631	T	C	rs10488631	pha002867	2.48E-06	phs000202	phs000216	2.01	[1.50-2.68]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	T	TNPO3	nearGene-3
7	128617466	rs12531711	A	C,G	rs12531711	21408207	6.00E-09	NA	1.58	[1.36-1.83]	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs12531711-G	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
7	128617466	rs12531711	A	C,G	rs12531711	23053960	6.00E-13	NA	1.59	[1.40-1.81]	1,527 European ancestry cases; 3,421 European ancestry controls	European(4948)	ALL(4948)	EUR(4948)	ALL(4948)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs12531711-A	Meta-Analysis	Research Support, Non-U.S. Gov't	A
7	128621204	rs7789423	A	G	rs7789423	24871463	9.20E-07	NA	1.38	[1.48-1.29]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7789423-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
7	128655918	rs6965542	C	T	rs6965542	21408207	2.10E-06	NA	NA	NA	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
7	128668510	rs10239340	T	G	rs10239340	18204446	6.98E-16	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
7	128668510	rs10239340	T	G	rs10239340	21408207	9.30E-07	NA	NA	NA	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
7	128668510	rs10239340	T	G	rs10239340	24871463	1.10E-07	NA	1.39	[1.49-1.30]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs10239340-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
7	128683547	rs10279821	T	C	rs10279821	18204446	6.50E-09	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
7	128683547	rs10279821	T	C	rs10279821	24871463	3.80E-06	NA	1.37	[1.47-1.28]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs10279821-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T,C
7	128695983	rs13239597	C	A	rs13239597	23740937	1.00E-29	NA	1.66	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
7	128717906	rs12537284	G	A	rs12537284	18204446	4.00E-19	NA	1.54	[1.40-1.70]	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs12537284-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
7	128717906	rs12537284	G	A	rs12537284	21408207	2.80E-11	NA	NA	NA	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
7	128717906	rs12537284	G	A	rs12537284	24871463	1.20E-11	NA	1.69	[1.83-1.57]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs12537284-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
7	128717906	rs12537284	G	A	rs12537284	pha002867	2.37E-05	phs000202	phs000216	1.78	[1.36-2.32]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	NA	NA
7	128729128	rs2084654	A	G	rs2084654	21408207	3.60E-06	NA	NA	NA	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
7	128729128	rs2084654	A	G	rs2084654	24871463	4.10E-08	NA	1.42	[1.51-1.34]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2084654-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
7	131862710	rs3734991	G	A	rs3734991	pha002867	1.62E-05	phs000202	phs000216	1.61	[1.30-2.00]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	C	PLXNA4	intron
7	147933618	rs1881726	C	T	rs1881726	23740937	1.62E-06	NA	1.27	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
7	150260388	rs6464080	T	C	rs6464080	23740937	4.29E-06	NA	1.17	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
8	9395532	rs6601327	G	A	rs6601327	18204446	1.99E-07	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
8	10761585	rs6985109	G	A	rs6985109	18204446	2.51E-11	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
8	10767748	rs4240671	G	A	rs4240671	18204446	6.60E-09	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
8	10788875	rs11783247	C	T	rs11783247	18204446	8.00E-10	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
8	10796093	rs6984496	G	T	rs6984496	18204446	2.00E-10	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
8	11116661	rs17728678	A	G	rs17728678	23740937	6.68E-05	NA	1.16	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
8	11272164	rs7836059	G	A	rs7836059	18204446	4.00E-10	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
8	11337887	rs1564267	T	C	rs1564267	23273568	3.50E-13	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	C
8	11340181	rs7812879	T	C	rs7812879	19838193	2.00E-24	NA	1.45	[1.35-1.56]	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7812879-G	Research Support, Non-U.S. Gov't	C,T	NA
8	11340181	rs7812879	T	C	rs7812879	23273568	3.40E-13	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	C,T
8	11343680	rs2254546	A	G	rs2254546	23273568	2.00E-13	NA	1.49	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2254546-G	Meta-Analysis	Research Support, Non-U.S. Gov't	G
8	11343973	rs2736340	C	T	rs2736340	19838193	3.42E-06	NA	NA	NA	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	C	NA
8	11343973	rs2736340	C	T	rs2736340	21408207	3.00E-07	NA	1.38	[1.23-1.56]	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2736340-T	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
8	11343973	rs2736340	C	T	rs2736340	23273568	3.30E-12	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	C
8	11343973	rs2736340	C	T	rs2736340	23740937	1.00E-08	NA	1.22	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
8	11349186	rs13277113	G	A	rs13277113	18204098	1.00E-10	NA	1.39	[1.28-1.51]	1,311 cases; 3,340 controls	NOPOP(4651)	ALL(4651)	NOPOP(4651)	ALL(4651)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs13277113-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
8	11349186	rs13277113	G	A	rs13277113	19838193	3.07E-07	NA	NA	NA	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	G	NA
8	11349186	rs13277113	G	A	rs13277113	23053960	2.00E-10	NA	1.39	[1.26-1.54]	1,527 European ancestry cases; 3,421 European ancestry controls	European(4948)	ALL(4948)	EUR(4948)	ALL(4948)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs13277113-A	Meta-Analysis	Research Support, Non-U.S. Gov't	G
8	11349186	rs13277113	G	A	rs13277113	23273568	1.10E-12	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	G
8	11352541	rs2618476	T	C	rs2618476	19165918	2.00E-08	NA	1.29	NA	431 cases; 2,155 controls	NOPOP(2586)	ALL(2586)	NOPOP(2586)	ALL(2586)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
8	11391650	rs2248932	A	G	rs2248932	18204446	7.00E-10	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
8	11391650	rs2248932	A	G	rs2248932	19838193	1.63E-14	NA	NA	NA	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	C	BLK
8	11439225	rs12677326	G	A	rs12677326	21408207	1.40E-06	NA	NA	NA	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
8	11450587	rs10903340	T	G	rs10903340	18204446	1.46E-07	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
8	56849386	rs7829816	A	G	rs7829816	18204446	5.40E-09	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
8	56897951	rs2667978	A	G	rs2667978	18204446	5.10E-08	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
8	70602926	rs2933069	A	C	rs2933069	24925725	7.04E-05	(Dominant)	1.96	[1.42-2.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2933069-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
8	70602944	rs2933068	A	G	rs2933068	24925725	7.07E-05	(Dominant)	1.95	[1.42-2.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2933068-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
8	70605072	rs2380563	G	T	rs2380563	24925725	7.43E-05	(Dominant)	1.95	[1.42-2.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2380563-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
8	70607090	rs2933061	G	A	rs2933061	24925725	7.91E-05	(Dominant)	1.94	[1.41-2.66]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2933061-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
8	70608241	rs2933060	G	A	rs2933060	24925725	4.40E-05	(Dominant)	1.97	[1.44-2.70]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2933060-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
8	70610089	rs2860282	T	C	rs2860282	24925725	3.45E-05	(Dominant)	1.98	[1.45-2.71]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2860282-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
8	70616633	rs2959579	G	A	rs2959579	24925725	3.45E-05	(Dominant)	1.98	[1.45-2.71]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2959579-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
8	70616800	rs2933054	A	G	rs2933054	24925725	3.45E-05	(Dominant)	1.98	[1.45-2.71]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2933054-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
8	73777863	rs13264816	C	T	rs13264816	24925725	4.68E-05	(Dominant)	1.57	[1.27-1.94]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs13264816-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
8	73780011	rs7816119	A	G	rs7816119	24925725	4.69E-05	(Dominant)	1.57	[1.27-1.94]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs7816119-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
8	73780152	rs13250976	G	A	rs13250976	24925725	3.52E-05	(Dominant)	1.58	[1.28-1.95]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs13250976-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
8	101680355	rs2935548	A	G	rs2935548	23740937	1.92E-06	NA	1.35	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
8	122275906	rs7834765	G	T	rs7834765	24925725	1.00E-06	(Recessive)	3.15	[1.97-5.03]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs7834765-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
8	122275983	rs7834648	C	T	rs7834648	24925725	1.07E-06	(Recessive)	3.15	[1.97-5.03]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs7834648-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
8	122276148	rs7834813	A	C	rs7834813	24925725	1.14E-05	(Recessive)	2.69	[1.72-4.23]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs7834813-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
8	128978856	rs755521	A	C	rs755521	pha002867	2.68E-05	phs000202	phs000216	1.05	[0.87-1.28]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	T	PVT1	intron
8	131819444	rs17324385	T	C	rs17324385	24925725	5.15E-05	(Additive)	1.43	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
8	132828062	rs7815383	T	C	rs7815383	23740937	2.01E-06	NA	1.45	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
9	27498800	rs1031154	A	C	rs1031154	20706608	7.00E-06	Systemic lupus erythematosus (SLE)	NA	NA	233 African ancestry cases; 185 African ancestry controls	African(418)	ALL(418)	AFR(418)	ALL(418)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
9	27512234	rs12553951	A	C	rs12553951	20706608	2.50E-04	Systemic lupus erythematosus (SLE) (males)	NA	NA	233 African ancestry cases; 185 African ancestry controls	African(418)	ALL(418)	AFR(418)	ALL(418)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
9	29614435	rs10969287	A	G	rs10969287	24925725	4.44E-05	(Recessive)	3.12	[1.86-5.25]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs10969287-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
9	29632142	rs601162	A	G	rs601162	24925725	1.00E-06	(Recessive)	3.11	[1.99-4.88]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs601162-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
9	29632345	rs498619	G	A	rs498619	24925725	2.28E-05	(Recessive)	2.74	[1.75-4.30]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs498619-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
9	29632433	rs602469	C	T	rs602469	24925725	1.69E-06	(Recessive)	3.08	[1.97-4.82]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs602469-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
9	29637044	rs583110	A	C	rs583110	24925725	4.93E-06	(Recessive)	2.96	[1.89-4.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs583110-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
9	94102162	rs10991892	A	G	rs10991892	pha002867	2.37E-06	phs000202	phs000216	4.64	[2.45-8.78]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	A	AUH	intron
9	112853511	rs7038399	G	A	rs7038399	23740937	1.72E-04	dcSSc	1.2	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
9	113756464	rs10980684	T	C	rs10980684	20659327	1.20E-04	Anti-Ro with Anti-Sm autoantibody status in systemic lupus erythematosus (SLE) patients	NA	NA	20 African American cases; 36 European American cases; 32 Hispanic American cases; 16 Asian American cases; selected for extremes of serum IFN-alpha activity	Asian American(16)	African American(20)	Hispanic American(32)	European American(36)	ALL(104)	ASN(16)	HIS(32)	AFR(20)	EUR(36)	ALL(104)	Systemic lupus erythematosus(serologic and cytokine profiles in serum)	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA
9	119522445	rs10759854	C	A	rs10759854	24925725	3.76E-05	(Recessive)	1.95	[1.41-2.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs10759854-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
9	119525465	rs930465	T	C	rs930465	24925725	5.61E-05	(Recessive)	1.92	[1.39-2.65]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs930465-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
9	119525840	rs930466	T	C	rs930466	24925725	3.57E-05	(Recessive)	1.96	[1.41-2.71]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs930466-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
9	119528478	rs10759855	A	C	rs10759855	24925725	4.64E-05	(Recessive)	1.94	[1.40-2.68]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs10759855-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
9	119870092	rs944981	G	T	rs944981	24925725	7.34E-05	(Dominant)	1.69	[2.17-2.17]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
9	124623193	rs10985423	G	A	rs10985423	24925725	7.23E-05	(Recessive)	2.13	[3.03-3.03]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
9	135096767	rs11243676	G	A	rs11243676	18204098	3.00E-06		NA	NA	1,311 cases; 3,340 controls	NOPOP(4651)	ALL(4651)	NOPOP(4651)	ALL(4651)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs11243676-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
9	135245867	rs1185995	A	G	rs1185995	pha002867	1.06E-05	phs000202	phs000216	4.02	[2.17-7.48]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	A,G	NA	NA
9	140573808	rs3895387	C	T	rs3895387	24925725	7.65E-05	(Dominant)	1.56	[1.96-1.96]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
10	1685508	rs10903528	A	G	rs10903528	23740937	1.63E-05	ATA	1.22	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
10	4420709	rs17271524	T	C	rs17271524	17911428	7.00E-05	NA	NA	NA	51 cases; 114 controls	NOPOP(165)	ALL(165)	NOPOP(165)	ALL(165)	Lupus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	NA	T	NA
10	4932085	rs10904368	G	A	rs10904368	23740937	2.28E-06	NA	1.28	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
10	5886734	rs2380205	C	T	rs2380205	23740937	1.97E-04	NA	1.16	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
10	6512559	rs7080157	G	A	rs7080157	24925725	5.56E-05	(Dominant)	1.61	[1.28-2.01]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs7080157-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
10	7508499	rs4748940	A	G	rs4748940	pha002867	3.09E-08	phs000202	phs000216	2.07	[1.60-2.69]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	A	NA	NA
10	13628528	rs2478106	T	C	rs2478106	24925725	1.42E-05	(Dominant)	1.66	[1.33-2.06]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2478106-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
10	13645210	rs2399985	C	T	rs2399985	24925725	1.16E-05	(Dominant)	1.65	[1.33-2.06]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2399985-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
10	13650032	rs2478118	C	T	rs2478118	24925725	5.00E-06	(Dominant)	1.61	[1.30-1.99]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2478118-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
10	49936336	rs11101442	C	T	rs11101442	19165918	3.00E-06	NA	NA	NA	431 cases; 2,155 controls	NOPOP(2586)	ALL(2586)	NOPOP(2586)	ALL(2586)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
10	50025396	rs7097397	G	A	rs7097397	20169177	8.00E-12	NA	1.3	[1.21-1.40]	314 Chinese cases; 1,500 Chinese controls	Chinese(1814)	ALL(1814)	ASN(1814)	ALL(1814)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7097397-G	Research Support, Non-U.S. Gov't	G	WDFY4
10	50042951	rs877819	A	G	rs877819	23273568	8.00E-09	NA	1.46	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs877819-A	Meta-Analysis	Research Support, Non-U.S. Gov't	G
10	50119054	rs1913517	A	G	rs1913517	19838193	7.00E-12	NA	1.24	[1.17-1.32]	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1913517-A	Research Support, Non-U.S. Gov't	A	WDFY4
10	50119054	rs1913517	A	G	rs1913517	23273568	3.10E-06	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	A
10	50122181	rs7094610	C	A	rs7094610	19838193	5.70E-10	NA	NA	NA	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	C	LRRC18
10	63805617	rs4948496	T	C	rs4948496	23273568	5.00E-11	NA	1.18	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs4948496-C	Meta-Analysis	Research Support, Non-U.S. Gov't	C
10	68168954	rs1948946	T	C	rs1948946	pha002867	2.98E-05	phs000202	phs000216	1.72	[1.33-2.22]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	T	CTNNA3	intron
10	71527530	rs2704465	G	A	rs2704465	19838193	6.33E-05	NA	NA	NA	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	G	NA
10	72059506	rs10762360	G	C	rs10762360	20659327	1.60E-04	Anti-La autoantibody status in systemic lupus erythematosus (SLE) patients	NA	NA	20 African American cases; 36 European American cases; 32 Hispanic American cases; 16 Asian American cases; selected for extremes of serum IFN-alpha activity	Asian American(16)	African American(20)	Hispanic American(32)	European American(36)	ALL(104)	ASN(16)	HIS(32)	AFR(20)	EUR(36)	ALL(104)	Systemic lupus erythematosus(serologic and cytokine profiles in serum)	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA
10	73115942	rs2252996	G	A	rs2252996	23273568	3.00E-06	NA	1.22	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2252996-A	Meta-Analysis	Research Support, Non-U.S. Gov't	A
10	78109971	rs7900522	T	C	rs7900522	23740937	9.49E-09	NA	1.59	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
10	80405937	rs10762795	G	A	rs10762795	24925725	6.15E-05	(Dominant)	1.72	[2.22-2.22]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
10	105826419	rs9971100	A	C	rs9971100	24925725	6.63E-05	(Additive)	1.47	[1.75-1.75]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
10	105829492	rs11591291	C	A,T	rs11591291	24925725	3.71E-05	(Additive)	1.47	[1.79-1.79]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
10	105838703	rs2274107	G	A	rs2274107	24925725	3.77E-05	(Additive)	1.47	[1.79-1.79]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
10	105854329	rs12358982	A	G	rs12358982	24925725	2.38E-05	(Additive)	1.49	[1.79-1.79]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
10	113226818	rs1878244	A	G	rs1878244	24925725	4.66E-05	(Additive)	1.38	[1.18-1.60]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs1878244-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
10	113227548	rs1878241	C	T	rs1878241	24925725	4.59E-05	(Additive)	1.38	[1.18-1.61]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs1878241-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G,A
10	113229580	rs10885193	C	T	rs10885193	24925725	4.45E-05	(Additive)	1.36	[1.17-1.59]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs10885193-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
10	133355477	rs4342938	A	G	rs4342938	23740937	9.36E-07	NA	1.21	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
10	135225666	rs10857712	T	C	rs10857712	24871463	3.00E-06	NA	1.51	[1.39-1.64]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs10857712-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
11	589564	rs4963128	T	C	rs4963128	18204446	3.00E-10	NA	1.28	[1.18-1.37]	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
11	589564	rs4963128	T	C	rs4963128	21408207	4.00E-06	NA	1.33	[1.18-1.49]	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
11	589564	rs4963128	T	C	rs4963128	24871463	2.50E-05	NA	NA	NA	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
11	601785	rs2396545	T	C	rs2396545	23740937	8.00E-06	ACA	1.19	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
11	606749	rs936469	G	A	rs936469	23740937	9.64E-07	NA	1.27	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
11	2345621	rs11022291	T	C	rs11022291	23740937	3.66E-06	NA	1.26	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
11	11808547	rs16910122	C	T	rs16910122	23740937	2.72E-06	NA	1.27	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
11	34764479	rs1355223	A	G	rs1355223	23740937	4.00E-06	lcSSc	1.12	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
11	34780278	rs906902	G	A	rs906902	24871463	2.10E-07	NA	1.38	[1.47-1.30]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs906902-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
11	34780936	rs10466455	T	C	rs10466455	24871463	2.00E-07	NA	1.38	[1.30-1.47]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs10466455-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
11	35088683	rs2732547	T	C	rs2732547	24871463	2.20E-05	NA	NA	NA	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
11	35093070	rs2785197	A	G	rs2785197	23273568	2.00E-07	NA	1.23	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2785197-C	Meta-Analysis	Research Support, Non-U.S. Gov't	T
11	35093070	rs2785197	A	G	rs2785197	24871463	9.90E-06	NA	NA	NA	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
11	40041290	rs6485172	A	G	rs6485172	pha002867	1.39E-05	phs000202	phs000216	1.82	[1.39-2.38]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	A	NA	NA
11	40071023	rs10837325	G	A	rs10837325	pha002867	1.73E-05	phs000202	phs000216	1.82	[1.39-2.38]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	A	NA	NA
11	45762996	rs2593753	T	G	rs2593753	24925725	1.67E-05	(Dominant)	1.64	[2.04-2.04]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
11	55136219	rs7927370	C	T	rs7927370	21408207	7.00E-06	NA	1.92	[1.45-2.56]	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
11	84455359	rs6592199	T	G	rs6592199	pha002867	1.45E-06	phs000202	phs000216	2.93	[1.89-4.54]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	T	DLG2	intron
11	94307285	rs1815826	C	T	rs1815826	24925725	6.27E-05	(Additive)	1.37	[1.59-1.59]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
11	94315307	rs10831244	C	A	rs10831244	24925725	1.84E-05	(Additive)	1.41	[1.64-1.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
11	94320237	rs7110167	T	C	rs7110167	24925725	1.77E-05	(Additive)	1.41	[1.64-1.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
11	94321398	rs2155100	C	T	rs2155100	24925725	1.77E-05	(Additive)	1.41	[1.64-1.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
11	94321986	rs2155099	T	C	rs2155099	24925725	1.73E-05	(Additive)	1.41	[1.64-1.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
11	94322695	rs10831246	T	C	rs10831246	24925725	1.77E-05	(Additive)	1.41	[1.64-1.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
11	94333874	rs649973	G	A	rs1267216	24925725	2.55E-05	(Additive)	1.39	[1.61-1.61]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
11	118573519	rs4639966	T	C	rs4639966	19838193	1.00E-16	NA	1.29	[1.22-1.37]	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs4639966-G	Research Support, Non-U.S. Gov't	T	NA
11	118573519	rs4639966	T	C	rs4639966	23273568	4.80E-05	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	T
11	124620147	rs11219769	G	T	rs11219769	20659327	2.10E-04	RNP with Anti-Sm autoantibody status in systemic lupus erythematosus (SLE) patients	NA	NA	20 African American cases; 36 European American cases; 32 Hispanic American cases; 16 Asian American cases; selected for extremes of serum IFN-alpha activity	Asian American(16)	African American(20)	Hispanic American(32)	European American(36)	ALL(104)	ASN(16)	HIS(32)	AFR(20)	EUR(36)	ALL(104)	Systemic lupus erythematosus(serologic and cytokine profiles in serum)	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA
11	128311059	rs6590330	G	A	rs6590330	19838193	2.00E-25	NA	1.37	NA	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs6590330-A	Research Support, Non-U.S. Gov't	G	NA
11	128311059	rs6590330	G	A	rs6590330	23273568	3.00E-08	NA	1.51	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs6590330-A	Meta-Analysis	Research Support, Non-U.S. Gov't	G
11	128325553	rs10893872	T	C	rs10893872	23273568	1.80E-06	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	T
11	128328959	rs1128334	C	T	rs1128334	20169177	2.00E-11	NA	1.29	[1.20-1.39]	314 Chinese cases; 1,500 Chinese controls	Chinese(1814)	ALL(1814)	ASN(1814)	ALL(1814)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1128334-A	Research Support, Non-U.S. Gov't	G	ETS1
12	12773521	rs12822507	A	G	rs12822507	23273568	2.00E-08	NA	1.16	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs12822507-A	Meta-Analysis	Research Support, Non-U.S. Gov't	A
12	12834894	rs10845606	C	A	rs10845606	23273568	4.00E-17	NA	1.27	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs10845606-C	Meta-Analysis	Research Support, Non-U.S. Gov't	C
12	12870695	rs34330	T	C	rs34330	23273568	5.00E-12	NA	1.19	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs34330-C	Meta-Analysis	Research Support, Non-U.S. Gov't	T
12	22063971	rs4148654	A	G	rs4148654	23740937	2.80E-06	NA	1.21	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
12	24172215	rs4963737	T	C	rs4963737	24925725	1.43E-05	(Dominant)	1.69	[2.17-2.17]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
12	24172546	rs17481181	T	G	rs17481181	24925725	1.43E-05	(Dominant)	1.69	[2.17-2.17]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
12	24176297	rs7973213	C	T	rs7973213	24925725	1.37E-05	(Dominant)	1.69	[2.17-2.17]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
12	24177194	rs12823336	T	C	rs12823336	24925725	1.38E-05	(Dominant)	1.69	[2.17-2.17]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
12	24177880	rs17403340	T	C	rs17403340	24925725	1.41E-05	(Dominant)	1.67	[2.17-2.17]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
12	24179673	rs10505927	G	A	rs10505927	24925725	1.67E-05	(Dominant)	1.69	[2.17-2.17]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
12	24181408	rs7307316	A	G	rs7307316	24925725	1.40E-05	(Dominant)	1.69	[2.17-2.17]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
12	24214050	rs4963564	C	T	rs4963564	24925725	4.56E-05	(Dominant)	1.67	[2.13-2.13]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
12	24214258	rs4963565	A	G	rs4963565	24925725	4.51E-05	(Dominant)	1.67	[2.13-2.13]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
12	24214665	rs12810574	C	T	rs12810574	24925725	4.52E-05	(Dominant)	1.67	[2.13-2.13]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
12	24215026	rs17485232	T	C	rs17485232	24925725	4.47E-05	(Dominant)	1.67	[2.13-2.13]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
12	24238010	rs17407659	C	T	rs17407659	24925725	2.50E-05	(Dominant)	1.82	[2.44-2.44]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
12	24403997	rs2686331	A	C	rs2686331	23740937	3.15E-04	NA	1.12	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
12	29851719	rs10843492	T	C	rs10843492	23740937	3.24E-06	NA	1.22	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
12	31148187	rs3741869	G	A	rs3741869	pha002867	3.19E-05	phs000202	phs000216	1.9	[1.40-2.56]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	TSPAN11	UTR-3
12	56439209	rs12580100	A	G	rs12580100	18204446	9.00E-04	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
12	56861458	rs7302925	A	G	rs7302925	22291604	2.90E-05	NA	NA	NA	891 Japanese ancestry cases; 3,384 Japanese ancestry controls	Japanese(4275)	ALL(4275)	ASN(4275)	ALL(4275)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	A	NA
12	63281446	rs10784318	G	C	rs10784318	20659327	3.60E-05	Anti-La autoantibody status in systemic lupus erythematosus (SLE) patients	NA	NA	20 African American cases; 36 European American cases; 32 Hispanic American cases; 16 Asian American cases; selected for extremes of serum IFN-alpha activity	Asian American(16)	African American(20)	Hispanic American(32)	European American(36)	ALL(104)	ASN(16)	HIS(32)	AFR(20)	EUR(36)	ALL(104)	Systemic lupus erythematosus(serologic and cytokine profiles in serum)	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA
12	77009060	rs2669010	A	G	rs2669010	21408207	5.00E-06	NA	1.28	[1.16-1.42]	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2669010-A	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
12	78075142	rs10161149	C	T	rs10161149	23740937	2.11E-04	dcSSc	1.24	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
12	84941429	rs2125716	A	G	rs2125716	pha002867	1.13E-05	phs000202	phs000216	1.7	[1.34-2.16]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	C	NA	NA
12	96261568	rs6538678	A	G	rs6538678	24925725	2.00E-06	(Additive)	1.57	[1.30-1.88]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs6538678-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
12	96434746	rs7971150	A	G	rs7971150	24925725	6.46E-05	(Additive)	1.36	[1.18-1.58]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs7971150-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
12	96435443	rs2887104	A	G	rs2887104	24925725	7.57E-05	(Additive)	1.36	[1.18-1.57]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2887104-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
12	96438641	rs7966098	G	T	rs7966098	24925725	5.25E-05	(Additive)	1.33	[1.15-1.54]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs7966098-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
12	102321935	rs4622329	G	A	rs4622329	23273568	9.00E-12	NA	1.19	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs4622329-A	Meta-Analysis	Research Support, Non-U.S. Gov't	G
12	126008058	rs11058220	C	A	rs11058220	24925725	2.13E-05	(Recessive)	2.55	[1.70-3.84]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs11058220-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
12	126008354	rs11058222	A	G	rs11058222	24925725	4.76E-05	(Recessive)	2.52	[1.65-3.83]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs11058222-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
12	126010198	rs12814129	T	C	rs12814129	24925725	2.64E-05	(Recessive)	2.73	[1.76-4.22]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs12814129-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
12	126010335	rs12832769	C	T	rs12832769	24925725	2.06E-05	(Recessive)	2.66	[1.74-4.07]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs12832769-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
12	129299385	rs10847697	G	A	rs10847697	23273568	1.10E-07	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	G
12	129300694	rs1385374	C	T	rs1385374	19838193	2.00E-11	NA	1.26	[1.18-1.35]	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1385374-A	Research Support, Non-U.S. Gov't	C	SLC15A4
12	129300694	rs1385374	C	T	rs1385374	23273568	8.00E-08	NA	1.41	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs1385374-A	Meta-Analysis	Research Support, Non-U.S. Gov't	C
13	20897841	rs7320913	T	G	rs7320913	23740937	4.73E-06	NA	1.48	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
13	41558110	rs7329174	A	G	rs7329174	21044949	1.00E-08	NA	1.26	[1.16-1.36]	612 Chinese cases; 1,160 Chinese controls	Chinese(1772)	ALL(1772)	ASN(1772)	ALL(1772)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7329174-G	Research Support, Non-U.S. Gov't	A	ELF1
13	41558110	rs7329174	A	G	rs7329174	23273568	6.00E-06	NA	1.45	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7329174-G	Meta-Analysis	Research Support, Non-U.S. Gov't	A
13	63539680	rs2063587	G	T	rs2063587	23740937	3.47E-06	NA	1.72	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
13	82700330	rs9545990	C	T	rs9545990	23740937	1.54E-06	NA	1.25	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
13	86450210	rs1185648	T	C	rs1185648	23740937	4.05E-06	NA	1.21	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
13	96126828	rs870707	C	A	rs870707	pha002867	2.95E-08	phs000202	phs000216	2.27	[1.69-3.03]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	C	CLDN10	intron
13	110855677	rs538390	G	T	rs538390	24925725	1.84E-05	(Recessive)	2.08	[2.94-2.94]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
13	110856153	rs648705	A	C	rs648705	24925725	1.09E-05	(Recessive)	2.08	[2.94-2.94]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
13	110856271	rs645098	C	T	rs645098	24925725	1.80E-05	(Recessive)	2.08	[2.94-2.94]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
13	110857823	rs482757	C	T	rs482757	24925725	1.80E-05	(Recessive)	2.04	[2.86-2.86]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
13	110857895	rs677877	A	G	rs677877	24925725	1.80E-05	(Recessive)	2.04	[2.86-2.86]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
13	110859743	rs598893	C	T	rs598893	24925725	1.75E-05	(Recessive)	2.04	[2.86-2.86]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
13	110861444	rs9559744	C	T	rs9559744	24925725	1.52E-05	(Recessive)	2.04	[2.86-2.86]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
14	39341845	rs10483546	C	A,G,T	rs10483546	pha002867	9.61E-06	phs000202	phs000216	2.49	[1.66-3.72]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	C	LOC283547	intron
14	43354861	rs17113620	C	T	rs17113620	pha002867	8.17E-07	phs000202	phs000216	2.5	[1.75-3.70]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	C	NA	NA
14	51214930	rs11624766	T	C	rs11624766	24925725	7.68E-05	(Additive)	1.5	[1.22-1.85]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs11624766-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
14	51221672	rs10132785	A	C	rs10132785	24925725	5.73E-05	(Additive)	1.53	[1.24-1.90]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs10132785-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
14	51227000	rs4901055	A	G	rs4901055	24925725	1.17E-05	(Additive)	1.58	[1.29-1.95]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs4901055-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
14	51227322	rs10141242	T	C	rs10141242	24925725	6.12E-06	(Additive)	1.6	[1.30-1.97]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs10141242-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
14	51231298	rs7153562	C	A	rs7153562	24925725	2.02E-05	(Additive)	1.46	[1.23-1.74]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs7153562-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
14	51232335	rs6572695	C	T	rs6572695	24925725	2.70E-05	(Additive)	1.45	[1.22-1.73]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs6572695-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
14	51234160	rs8012283	A	G	rs8012283	24925725	3.00E-07	(Additive)	1.64	[1.35-1.98]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs8012283-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
14	51238759	rs8015968	C	A	rs8015968	24925725	1.89E-06	(Additive)	1.72	[1.38-2.15]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs8015968-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
14	51250337	rs11157764	G	A	rs11157764	24925725	1.07E-05	(Additive)	1.67	[1.34-2.10]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs11157764-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
14	51261672	rs10137294	T	C	rs10137294	24925725	3.08E-05	(Additive)	1.59	[1.28-1.97]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs10137294-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
14	51799925	rs2884058	A	G	rs2884058	pha002867	2.85E-05	phs000202	phs000216	2	[1.43-2.70]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	NA	NA
14	58559241	rs4901847	C	T	rs4901847	24925725	2.00E-06	(Additive)	1.48	[1.28-1.71]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs4901847-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
14	59509205	rs10220668	A	G	rs10220668	23740937	8.94E-07	NA	1.22	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
14	90843908	rs17126685	T	C	rs17126685	23740937	4.31E-06	NA	1.32	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
15	34261069	rs661968	C	T	rs661968	23740937	5.26E-07	NA	2.15	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
15	38764843	rs11073328	C	T	rs11073328	24871463	1.00E-14	NA	1.94	[1.77-2.11]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs11073328-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
15	41871492	rs12259	A	G	rs12259	24871463	3.40E-06	NA	10.42	[18.52-5.88]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs12259-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
15	73290655	rs9920771	C	T	rs9920771	23740937	1.09E-04	ATA	1.33	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
15	75424593	rs7172677	A	C	rs7172677	23740937	3.00E-08	NA	1.21	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
15	97607681	rs8023715	C	A	rs8023715	24871463	1.00E-08	NA	1.81	[1.64-2.00]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs8023715-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
16	11189888	rs12599402	T	C	rs12599402	23273568	5.00E-07	NA	1.28	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs12599402-A	Meta-Analysis	Research Support, Non-U.S. Gov't	C
16	11201428	rs9933507	T	C	rs9933507	23273568	2.40E-04	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	C
16	11203730	rs12103174	A	G	rs12103174	23273568	3.10E-04	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	G
16	11238783	rs2903692	G	A	rs2903692	23273568	9.00E-05	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	G
16	11241906	rs17673553	A	G	rs17673553	23273568	1.70E-04	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	A
16	24898972	rs274068	C	A	rs274068	24925725	5.00E-07	(Recessive)	2.85	[1.93-4.22]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs274068-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
16	24899150	rs274069	T	C	rs274069	24925725	8.50E-07	(Recessive)	2.78	[1.88-4.11]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs274069-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
16	29882490	rs12917712	C	T	rs12917712	23273568	7.00E-06	NA	1.07	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs12917712-T	Meta-Analysis	Research Support, Non-U.S. Gov't	T
16	30635659	rs7186852	A	G	rs7186852	19838193	3.00E-07	NA	1.29	[1.17-1.42]	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7186852-A	Research Support, Non-U.S. Gov't	G	NA
16	30642867	rs7197475	C	T	rs7197475	19838193	3.00E-08	NA	1.31	[1.20-1.46]	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs7197475-A	Research Support, Non-U.S. Gov't	T	NA
16	31276811	rs1143679	G	A	rs1143679	19286673	1.70E-17	Systemic lupus erythematosus (SLE)	NA	NA	314 Chinese SLE patients; 920 Chinese controls	Chinese(1234)	ALL(1234)	ASN(1234)	ALL(1234)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	G	ITGAM
16	31276811	rs1143679	G	A	rs1143679	19286673	7.30E-04	Renal involvement in systemic lupus erythematosus (SLE) patients	NA	NA	314 Chinese SLE patients; 920 Chinese controls	Chinese(1234)	ALL(1234)	ASN(1234)	ALL(1234)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	G	ITGAM
16	31281147	rs2359661	A	G	rs2359661	23740937	1.01E-07	NA	1.26	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
16	31298939	rs9937837	T	G	rs9937837	19286673	7.70E-04	Systemic lupus erythematosus (SLE)	NA	NA	314 Chinese SLE patients; 920 Chinese controls	Chinese(1234)	ALL(1234)	ASN(1234)	ALL(1234)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	G	ITGAM
16	31298939	rs9937837	T	G	rs9937837	21408207	7.90E-10	NA	NA	NA	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
16	31298939	rs9937837	T	G	rs9937837	23273568	7.00E-06	NA	1.86	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9937837-G	Meta-Analysis	Research Support, Non-U.S. Gov't	G
16	31301478	rs7190018	G	A	rs7190018	23740937	3.44E-11	NA	1.37	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
16	31313253	rs9888739	C	T	rs9888739	18204446	2.00E-23	NA	1.62	[1.47-1.78]	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9888739-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
16	31313253	rs9888739	C	T	rs9888739	19286673	1.61E-23	Systemic lupus erythematosus (SLE)	NA	NA	314 Chinese SLE patients; 920 Chinese controls	Chinese(1234)	ALL(1234)	ASN(1234)	ALL(1234)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	T	ITGAM
16	31313253	rs9888739	C	T	rs9888739	21408207	1.00E-15	NA	1.8	[1.56-2.07]	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9888739-T	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
16	31313253	rs9888739	C	T	rs9888739	23273568	7.30E-05	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	T
16	31313253	rs9888739	C	T	rs9888739	24871463	4.00E-11	NA	1.64	[1.51-1.78]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs9888739-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
16	31326706	rs11860650	C	T	rs11860650	23740937	1.00E-10	NA	1.32	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
16	31334236	rs11150610	C	A	rs11150610	19165918	2.00E-06	NA	NA	NA	431 cases; 2,155 controls	NOPOP(2586)	ALL(2586)	NOPOP(2586)	ALL(2586)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
16	31336888	rs1143683	C	T	rs1143683	19286673	1.70E-04	Renal involvement in systemic lupus erythematosus (SLE) patients	NA	NA	314 Chinese SLE patients; 920 Chinese controls	Chinese(1234)	ALL(1234)	ASN(1234)	ALL(1234)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	C	ITGAM
16	31336888	rs1143683	C	T	rs1143683	19286673	6.03E-08	Systemic lupus erythematosus (SLE)	NA	NA	314 Chinese SLE patients; 920 Chinese controls	Chinese(1234)	ALL(1234)	ASN(1234)	ALL(1234)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	C	ITGAM
16	31336888	rs1143683	C	T	rs1143683	19286673	7.00E-04	Neurological disorder in systemic lupus erythematosus (SLE) patients	NA	NA	314 Chinese SLE patients; 920 Chinese controls	Chinese(1234)	ALL(1234)	ASN(1234)	ALL(1234)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	C	ITGAM
16	31336888	rs1143683	C	T	rs1143683	23273568	8.60E-05	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	C
16	31340997	rs7193268	C	T	rs7193268	19286673	6.40E-04	Systemic lupus erythematosus (SLE)	NA	NA	314 Chinese SLE patients; 920 Chinese controls	Chinese(1234)	ALL(1234)	ASN(1234)	ALL(1234)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	C	ITGAM
16	31340997	rs7193268	C	T	rs7193268	21408207	5.70E-10	NA	NA	NA	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
16	31340997	rs7193268	C	T	rs7193268	23273568	8.70E-05	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	C
16	31343005	rs1143678	C	T	rs1143678	18204446	3.70E-16	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
16	31343005	rs1143678	C	T	rs1143678	19286673	8.50E-14	Systemic lupus erythematosus (SLE)	NA	NA	314 Chinese SLE patients; 920 Chinese controls	Chinese(1234)	ALL(1234)	ASN(1234)	ALL(1234)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	C	ITGAM
16	31343005	rs1143678	C	T	rs1143678	21408207	1.10E-09	NA	NA	NA	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
16	31343005	rs1143678	C	T	rs1143678	23273568	8.70E-05	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	C
16	31364493	rs4548893	C	T	rs4548893	18204446	2.36E-12	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
16	31364493	rs4548893	C	T	rs4548893	21408207	7.90E-10	NA	NA	NA	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
16	31368874	rs11574637	T	C	rs11574637	18204098	3.00E-11	NA	1.33	[1.22-1.46]	1,311 cases; 3,340 controls	NOPOP(4651)	ALL(4651)	NOPOP(4651)	ALL(4651)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs11574637-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
16	55176106	rs12932067	A	G	rs12932067	23740937	1.03E-06	NA	1.23	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
16	58918381	rs11076276	T	C	rs11076276	23740937	2.80E-06	NA	1.29	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
16	85973028	rs12711490	T	C	rs12711490	23740937	3.00E-10	NA	1.28	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
16	88013385	rs4843291	A	G	rs4843291	23740937	1.17E-06	NA	1.18	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
17	13733806	rs12949531	C	T	rs12949531	19165918	8.00E-06	NA	NA	NA	431 cases; 2,155 controls	NOPOP(2586)	ALL(2586)	NOPOP(2586)	ALL(2586)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
17	36753832	rs3892952	A	G	rs3892952	pha002867	1.19E-05	phs000202	phs000216	1.54	[1.27-1.89]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	G	SRCIN1	intron
17	37610123	rs11655550	T	C	rs11655550	23740937	1.42E-06	NA	1.26	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
17	37610123	rs11655550	T	C	rs11655550	24871463	7.00E-07	NA	1.48	[1.37-1.59]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs11655550-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
17	37943801	rs9911688	C	T	rs9911688	24871463	1.90E-05	NA	NA	NA	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
17	37976469	rs9303277	C	T	rs9303277	23740937	7.00E-06	ACA	1.19	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
17	73317644	rs12946365	C	T	rs12946365	23740937	4.57E-06	NA	1.25	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
17	73374945	rs4789182	G	A	rs4789182	23740937	8.50E-07	NA	1.24	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
18	8471372	rs17494870	C	T	rs17494870	20659327	2.20E-06	Serum interferon alpha (IFN-a) levels in systemic lupus erythematosus SLE) patients	NA	NA	20 African American cases; 36 European American cases; 32 Hispanic American cases; 16 Asian American cases; selected for extremes of serum IFN-alpha activity	Asian American(16)	African American(20)	Hispanic American(32)	European American(36)	ALL(104)	ASN(16)	HIS(32)	AFR(20)	EUR(36)	ALL(104)	Systemic lupus erythematosus(serologic and cytokine profiles in serum)	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA
18	39534825	rs3813065	C	T	rs3813065	20671926	5.00E-04	Anti-Ro and anti-Sm antibodies in systemic lupus erythematosus (SLE) patients	NA	NA	20 African ancestry cases; 36 European ancestry cases; 32 Hispanic cases; 16 Asian ancestry cases	Asia(16)	African(20)	European(36)	Hispanic(32)	ALL(104)	ASN(16)	HIS(32)	AFR(20)	EUR(36)	ALL(104)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690
18	55485514	rs2663839	C	T	rs2663839	23740937	3.92E-06	NA	1.19	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
18	61802304	rs4941246	C	T	rs4941246	23740937	6.43E-07	NA	1.19	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
18	66057032	rs1010444	C	T	rs1010444	24925725	5.70E-05	(Additive)	1.41	[1.21-1.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs1010444-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
18	66060991	rs8095325	C	T	rs8095325	24925725	6.49E-05	(Additive)	1.41	[1.21-1.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs8095325-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
18	66061008	rs9953072	C	T	rs9953072	24925725	6.85E-05	(Additive)	1.41	[1.21-1.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs9953072-C	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
18	66061728	rs1476801	T	C	rs1476801	24925725	6.29E-05	(Additive)	1.41	[1.21-1.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs1476801-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
18	66064840	rs8097533	G	A	rs8097533	24925725	3.94E-05	(Additive)	1.42	[1.22-1.65]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs8097533-G	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
18	66073870	rs569057	A	C	rs569057	24925725	2.57E-05	(Additive)	1.43	[1.23-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs569057-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
18	66075478	rs512195	T	G	rs512195	24925725	2.82E-05	(Additive)	1.43	[1.23-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs512195-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
18	66077814	rs559131	T	C	rs559131	24925725	3.54E-05	(Additive)	1.43	[1.22-1.66]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs559131-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
18	66085798	rs7241738	G	T	rs7241738	24925725	4.35E-05	(Additive)	1.42	[1.22-1.66]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs7241738-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
18	68842243	rs17083844	G	A	rs17083844	18204098	6.00E-06		NA	NA	1,311 cases; 3,340 controls	NOPOP(4651)	ALL(4651)	NOPOP(4651)	ALL(4651)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs17083844-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
19	17420289	rs2303745	G	T	rs2303745	23273568	1.00E-06	NA	1.07	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs2303745-A	Meta-Analysis	Research Support, Non-U.S. Gov't	A
19	33534641	rs7259371	G	A	rs7259371	23740937	3.20E-06	NA	1.21	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
19	44831989	rs2609881	T	G	rs2609881	pha002867	5.38E-07	phs000202	phs000216	2.9	[1.91-4.41]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	A	ZFP112	missense
20	2518565	rs6049839	G	T	rs6049839	21408207	8.00E-06	case-only	1.37	[1.19-1.58]	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs6049839-T	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
20	4742705	rs6084875	G	A	rs6084875	24871463	2.00E-06	NA	1.36	[1.27-1.44]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs6084875-A	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
20	8267739	rs2719791	C	T	rs2719791	24925725	3.43E-05	(Recessive)	2.35	[1.61-3.43]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	rs2719791-T	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
20	8853275	rs6086678	A	T	rs6086678	17911428	8.00E-05	NA	NA	NA	51 cases; 114 controls	NOPOP(165)	ALL(165)	NOPOP(165)	ALL(165)	Lupus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	NA	T	PLCB1
20	11144338	rs1028479	G	A	rs1028479	23740937	3.65E-06	NA	1.23	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
20	15437569	rs6074899	C	T	rs6074899	23740937	1.20E-06	NA	1.19	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
20	21120543	rs4815021	C	T	rs4815021	24925725	1.12E-05	(Additive)	1.45	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
20	21124872	rs4815022	T	C	rs4815022	24925725	8.42E-06	(Additive)	1.47	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
20	21126723	rs3762194	A	G	rs3762194	24925725	8.48E-06	(Additive)	1.45	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
20	21128127	rs1884763	A	G	rs1884763	24925725	8.43E-06	(Additive)	1.45	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
20	21130707	rs13041255	T	C	rs13041255	24925725	8.42E-06	(Additive)	1.45	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
20	21133212	rs4813414	A	G	rs4813414	24925725	8.42E-06	(Additive)	1.45	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
20	21134799	rs6047273	T	C	rs6047273	24925725	1.73E-05	(Additive)	1.45	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
20	21135126	rs6047274	T	C	rs6047274	24925725	8.43E-06	(Additive)	1.45	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
20	21138367	rs4815024	C	A	rs4815024	24925725	8.69E-06	(Additive)	1.45	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
20	21140342	rs2093069	C	T	rs2093069	24925725	8.84E-06	(Additive)	1.45	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
20	21142353	rs6047279	T	C	rs6047279	24925725	9.01E-06	(Additive)	1.45	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
20	21142813	rs2236178	T	C	rs2236178	24925725	5.00E-06	(Additive)	1.47	[1.27-1.72]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
20	21143935	rs6047280	G	T	rs6047280	24925725	1.37E-05	(Additive)	1.45	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
20	21145885	rs6035795	A	G	rs6035795	24925725	1.14E-05	(Additive)	1.45	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
20	21146287	rs6047281	A	G	rs6047281	24925725	1.14E-05	(Additive)	1.45	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
20	21152742	rs6082339	G	A	rs6082339	24925725	1.13E-05	(Additive)	1.45	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
20	21154487	rs6047293	G	A	rs6047293	24925725	1.13E-05	(Additive)	1.45	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
20	21156169	rs910975	A	G	rs910975	24925725	1.13E-05	(Additive)	1.45	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
20	21157510	rs2093070	T	G	rs2093070	24925725	1.13E-05	(Additive)	1.45	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	G
20	21157565	rs6035808	T	C	rs6515144	24925725	1.13E-05	(Additive)	1.45	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
20	21168361	rs8120377	G	T	rs8120377	24925725	1.30E-05	(Additive)	1.45	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
20	21168395	rs8120293	C	T	rs8120293	24925725	1.30E-05	(Additive)	1.45	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
20	21171172	rs765585	C	T	rs765585	24925725	1.30E-05	(Additive)	1.45	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	T
20	21175550	rs879064	T	C	rs879064	24925725	1.45E-05	(Additive)	1.45	[1.69-1.69]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
20	21179752	rs6137286	C	T	rs6137286	24925725	5.36E-05	(Additive)	1.43	[1.64-1.64]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
20	21195803	rs6137292	C	A	rs6137292	24925725	6.78E-05	(Additive)	1.43	[1.67-1.67]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
20	21414037	rs809220	T	C	rs809220	24925725	7.41E-05	(Dominant)	1.59	[1.96-1.96]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
20	48575315	rs11697848	C	T	rs11697848	24871463	1.00E-11	NA	2.12	[1.89-2.37]	725 European ancestry cases; 2,438 European ancestry controls	European(3163)	ALL(3163)	EUR(3163)	ALL(3163)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	C
21	21388493	rs2825943	A	G	rs2825943	23740937	2.20E-06	NA	1.22	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
21	36453837	rs2242900	A	G	rs2242900	23740937	4.41E-06	NA	1.38	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
21	36576601	rs2248159	G	A	rs2248159	pha002867	1.99E-05	phs000202	phs000216	1.79	[1.37-2.34]	NA	ALL(0)	ALL(0)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	NA	A	NA	NA
21	37817653	rs2835358	G	A	rs2835358	24925725	5.98E-05	(Dominant)	1.59	[1.96-1.96]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A
21	37818305	rs9974322	A	G	rs9974322	24925725	6.61E-05	(Dominant)	1.59	[1.96-1.96]	588 European ancestry cases; 1,412 European ancestry controls	European(2000)	ALL(2000)	EUR(2000)	ALL(2000)	Lupus nephritis in systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	NA	NA	NA	NA	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	A,G
21	40294024	rs2836757	A	G	rs2836757	23740937	3.47E-06	NA	1.18	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
22	21798907	rs465500	A	G	rs465500	23273568	5.20E-05	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	A
22	21809185	rs463426	T	C	rs463426	23273568	5.20E-05	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	T
22	21917190	rs131654	G	T	rs131654	19838193	1.00E-16	NA	1.28	[1.20-1.35]	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs131654-A	Research Support, Non-U.S. Gov't	T	UBE2L3
22	21917190	rs131654	G	T	rs131654	23273568	1.50E-04	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	T
22	21922904	rs2266959	G	T	rs2266959	23740937	1.64E-05	NA	1.18	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
22	21939675	rs5754217	G	T	rs5754217	18204446	7.53E-08	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.
22	21939675	rs5754217	G	T	rs5754217	19838193	3.82E-05	NA	NA	NA	1,047 Chinese Han cases; 1,205 Chinese Han controls	Chinese Han(2252)	ALL(2252)	ASN(2252)	ALL(2252)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, Non-U.S. Gov't	T	UBE2L3
22	21939675	rs5754217	G	T	rs5754217	21408207	2.00E-06	NA	1.38	[1.21-1.57]	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs5754217-T	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
22	21939675	rs5754217	G	T	rs5754217	23273568	5.00E-06	NA	1.12	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	rs5754217-T	Meta-Analysis	Research Support, Non-U.S. Gov't	T
22	21964761	rs4821112	G	A	rs4821112	21408207	5.50E-06	NA	NA	NA	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
22	21964761	rs4821112	G	A	rs4821112	23273568	6.00E-06	NA	NA	NA	1,656 Han Chinese cases; 3,394 Han Chinese controls	Han Chinese(5050)	ALL(5050)	ASN(5050)	ALL(5050)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Meta-Analysis	Research Support, Non-U.S. Gov't	A
22	21982892	rs2298428	C	T	rs2298428	21408207	2.10E-06	NA	NA	NA	811 anti-dsDNA positive European ancestry cases; 906 anti-dsDNA negative European ancestry cases; 4,813 European ancestry controls	European(6530)	ALL(6530)	EUR(6530)	ALL(6530)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, U.S. Gov't, P.H.S.	Research Support, Non-U.S. Gov't
22	23250737	rs1475930	T	C	rs1475930	23740937	4.92E-06	NA	1.18	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
22	43529029	rs7402	C	T	rs7402	23740937	5.78E-04	NA	1.12	NA	up to 2,761 European ancestry systemic sclerosis cases; 769 European ancestry systemic lupus erythematosus cases; 7,381 European ancestry controls	European(10911)	ALL(10911)	EUR(10911)	ALL(10911)	Systemic lupus erythematosus and Systemic sclerosis	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	DOID:1578	systemic lupus erythematosus	pulmonary systemic sclerosis	NA	NA	EFOID:0000717	systemic lupus erythematosus	Systemic scleroderma	Lung disease	Lupus erythematosus
22	43609760	rs2071725	G	A	rs2071725	18204446	1.21E-07	NA	NA	NA	720 female cases; 2,337 female controls	NOPOP(3057)	ALL(3057)	NOPOP(3057)	ALL(3057)	Systemic lupus erythematosus	HPOID:0002725	Systemic lupus erythematosus	DOID:9074	systemic lupus erythematosus	D008180	Lupus Erythematosus, Systemic	EFOID:0002690	systemic lupus erythematosus	Lupus erythematosus	NA	Research Support, N.I.H., Extramural	Research Support, Non-U.S. Gov't	Research Support, U.S. Gov't, Non-P.H.S.

Mapped by lexical matching(Total Items:0)
(Waiting for update.)

Mapped by homologous gene(Total Items:0)
(Waiting for update.)

Chemical(Total Drugs:20)
CUI	ChemicalName	ChemicalID	CasRN	DiseaseName	DiseaseID	DirectEvidence	PubMedIDs
C0024141	carbamazepine	D002220	298-46-4	lupus erythematosus, systemic	MESH:D008180	marker/mechanism	10669712
C0024141	celecoxib	D000068579	-	lupus erythematosus, systemic	MESH:D008180	therapeutic	17761345
C0024141	chlorambucil	D002699	305-03-3	lupus erythematosus, systemic	MESH:D008180	therapeutic	4700007
C0024141	chloroquine	D002738	1954/5/7	lupus erythematosus, systemic	MESH:D008180	therapeutic	11245140
C0024141	chlorpromazine	D002746	50-53-3	lupus erythematosus, systemic	MESH:D008180	marker/mechanism	2245719
C0024141	cyclophosphamide	D003520	50-18-0	lupus erythematosus, systemic	MESH:D008180	therapeutic	12739036
C0024141	diclofenac	D004008	15307-86-5	lupus erythematosus, systemic	MESH:D008180	therapeutic	1930326
C0024141	ethosuximide	D005013	77-67-8	lupus erythematosus, systemic	MESH:D008180	marker/mechanism	9776542
C0024141	folic acid	D005492	59-30-3	lupus erythematosus, systemic	MESH:D008180	marker/mechanism	17718048
C0024141	griseofulvin	D006118	126-07-8	lupus erythematosus, systemic	MESH:D008180	marker/mechanism	7577414
C0024141	indomethacin	D007213	53-86-1	lupus erythematosus, systemic	MESH:D008180	therapeutic	3600902
C0024141	methotrexate	D008727	1959/5/2	lupus erythematosus, systemic	MESH:D008180	therapeutic	17400583
C0024141	metoprolol	D008790	37350-58-6	lupus erythematosus, systemic	MESH:D008180	marker/mechanism	1747706
C0024141	propylthiouracil	D011441	51-52-5	lupus erythematosus, systemic	MESH:D008180	marker/mechanism	16425441
C0024141	rifampin	D012293	13292-46-1	lupus erythematosus, systemic	MESH:D008180	marker/mechanism	11422169
C0024141	sulfadiazine	D013411	68-35-9	lupus erythematosus, systemic	MESH:D008180	marker/mechanism	68769
C0024141	tacrolimus	D016559	109581-93-3	lupus erythematosus, systemic	MESH:D008180	therapeutic	9462174
C0024141	thalidomide	D013792	50-35-1	lupus erythematosus, systemic	MESH:D008180	therapeutic	10918274
C0024141	valproic acid	D014635	99-66-1	lupus erythematosus, systemic	MESH:D008180	marker/mechanism	9003978
C0024141	vincristine	D014750	-	lupus erythematosus, systemic	MESH:D008180	therapeutic	1696192

FDA approved drug and dosage information(Total Drugs:2)
DiseaseID	Drug_name	active_ingredients	strength	Dosage Form/Route	Marketing Status	TE code	RLD	RS
MESH:D008180	celebrex	celecoxib	100MG	CAPSULE;ORAL	Prescription	AB	Yes	No
MESH:D008180	celebrex	celecoxib	100MG	CAPSULE;ORAL	Prescription	None	No	No

FDA labeling changes(Total Drugs:2)
DiseaseID	Pediatric_Labeling_Date	Trade_Name	Generic_Name_or_Proper_Name	Indications Studied	Label Changes Summary	Product Labeling	BPCA(B)	PREA(P)	BPCA(B) and PREA(P)	Pediatric Rule (R)	Sponsor	Pediatric Exclusivity Granted Date	NNPS
MESH:D008180	12/15/2006	celebrex	celecoxib	Relief of the signs and symptoms of juvenile rheumatoid arthritis (JRA)	New indication in 2 years and older Has not been studied in patients < 2 years, in patients with body weight < 10 kg, or in patients with active systemic features Celecoxib should be used only with caution in patients with systemic onset JRA due to the risk for serious adverse reactions including the risk of disseminated intravascular coagulation The long-term cardiovascular toxicity in children has not been evaluated; it is unknown if the long-term risk may be similar to that seen in adults New 50 mg capsule developed Information on adding contents of a capsule to applesauce. for patients with difficulty swallowing capsules Information on dose, clinical studies, PK parameters, AEs	Labeling	B	-	-	-	Pfizer	08/23/2006	FALSE'
MESH:D008180	12/15/2006	celebrex	celecoxib	Relief of the signs and symptoms of juvenile rheumatoid arthritis (JRA)	New indication in 2 years and older Has not been studied in patients < 2 years, in patients with body weight < 10 kg, or in patients with active systemic features Celecoxib should be used only with caution in patients with systemic onset JRA due to the risk for serious adverse reactions including the risk of disseminated intravascular coagulation The long-term cardiovascular toxicity in children has not been evaluated; it is unknown if the long-term risk may be similar to that seen in adults New 50 mg capsule developed Information on adding contents of a capsule to applesauce. for patients with difficulty swallowing capsules Information on dose, clinical studies, PK parameters, AEs	Labeling	B	-	-	-	Pfizer	08/23/2006	FALSE'