leigh syndrome |
Disease ID | 23 |
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Disease | leigh syndrome |
Definition | A group of metabolic disorders primarily of infancy characterized by the subacute onset of psychomotor retardation, hypotonia, ataxia, weakness, vision loss, eye movement abnormalities, seizures, dysphagia, and lactic acidosis. Pathological features include spongy degeneration of the neuropile of the basal ganglia, thalamus, brain stem, and spinal cord. Patterns of inheritance include X-linked recessive, autosomal recessive, and mitochondrial. Leigh disease has been associated with mutations in genes for the PYRUVATE DEHYDROGENASE COMPLEX; CYTOCHROME-C OXIDASE; ATP synthase subunit 6; and subunits of mitochondrial complex I. (From Menkes, Textbook of Child Neurology, 5th ed, p850). |
Synonym | disease leigh disease, leigh's diseases leighs enceph subacute necrotizing encephalomyelitides, subacute necrotizing encephalomyelitis, subacute necrotizing encephalomyelopathies, subacute necrotizing encephalomyelopathy, necrotizing, subacute encephalomyelopathy, subacute necrotizing encephalopathies, subacute necrotizing encephalopathy, subacute necrotizing leigh dis leigh disease leigh disease [disease/finding] leigh syndrome (256000) leigh's disease leigh's disease (disorder) leighs dis leighs disease leighs syndrome ls necrotizing encephalomyelitides, subacute necrotizing encephalomyelitis, subacute necrotizing encephalomyelopathies, subacute necrotizing encephalomyelopathy, subacute necrotizing encephalopathies, subacute necrotizing encephalopathy, subacute sne snem - subacute necrotising encephalomyelopathy snem - subacute necrotizing encephalomyelopathy subacute necrotising encephalomyelopathy subacute necrotising encephalopathy subacute necrotizing enceph subacute necrotizing encephalomyelitides subacute necrotizing encephalomyelitis subacute necrotizing encephalomyelopathies subacute necrotizing encephalomyelopathy subacute necrotizing encephalopathies subacute necrotizing encephalopathy |
Orphanet | |
OMIM | |
DOID | |
ICD10 | |
UMLS | C0023264 |
MeSH | |
SNOMED-CT | |
Comorbidity | UMLS | Disease | Sentences' Count(Total Sentences:15) C0014544 | epilepsy | 3 C0029124 | optic atrophy | 2 C0456909 | blindness | 1 C0751651 | mitochondrial disorders | 1 C0026850 | muscular dystrophy | 1 C0034063 | pulmonary edema | 1 C0029089 | ophthalmoplegia | 1 C0026654 | moyamoya | 1 C0751651 | mitochondrial disorder | 1 C1838979 | mitochondrial complex i deficiency | 1 C0004134 | ataxia | 1 C0410174 | fukuyama congenital muscular dystrophy | 1 C0028738 | nystagmus | 1 C0026654 | moyamoya disease | 1 C0699743 | congenital muscular dystrophy | 1 |
Curated Gene | Entrez_id | Symbol | Resource(Total Genes:41) SURF1 | 6834 | CLINVAR;GHR;ORPHANET;UniProtKB-KW;UNIPROT;CTD_human SDHA | 6389 | CTD_human;GHR;UniProtKB-KW;UNIPROT IARS2 | 55699 | CLINVAR MT-ATP6 | 4508 | UniProtKB-KW;GHR PDSS2 | 57107 | GHR POLG | 5428 | UniProtKB-KW;UNIPROT LRPPRC | 10128 | UniProtKB-KW;GHR MT-ND2 | 4536 | GHR MT-ND1 | 4535 | GHR NDUFV1 | 4723 | CTD_human;UNIPROT;GHR;UniProtKB-KW DLD | 1738 | CTD_human NDUFS1 | 4719 | GHR NDUFS2 | 4720 | ORPHANET;GHR NDUFS3 | 4722 | CTD_human;GHR NDUFS4 | 4724 | CTD_human;GHR NDUFS7 | 374291 | CTD_human;UniProtKB-KW;GHR NDUFS8 | 4728 | CLINVAR;CTD_human;UNIPROT;GHR;UniProtKB-KW NDUFAF6 | 137682 | CTD_human;GHR BCS1L | 617 | CTD_human COX15 | 1355 | CTD_human;UNIPROT;GHR;UniProtKB-KW COX10 | 1352 | UniProtKB-KW;GHR MT-ND6 | 4541 | GHR MT-ND5 | 4540 | UniProtKB-KW;GHR MT-ND4 | 4538 | GHR PDHB | 5162 | GHR TACO1 | 51204 | CTD_human;UniProtKB-KW;GHR NDUFA2 | 4695 | CTD_human;GHR PDHA1 | 5160 | UniProtKB-KW;GHR NDUFA1 | 4694 | GHR NDUFA4 | 4697 | UniProtKB-KW MTFMT | 123263 | CLINVAR;UniProtKB-KW NDUFAF5 | 79133 | UNIPROT;GHR;UniProtKB-KW NDUFAF2 | 91942 | CTD_human;GHR NDUFA12 | 55967 | UniProtKB-KW NDUFA10 | 4705 | GHR NDUFA11 | 126328 | GHR NARS2 | 79731 | UniProtKB-KW;UNIPROT FOXRED1 | 55572 | CTD_human;GHR ECHS1 | 1892 | CLINVAR SCO2 | 9997 | ORPHANET;UniProtKB-KW MT-ND3 | 4537 | UniProtKB-KW;GHR |
Inferring Gene | Entrez_id | Symbol | Resource(Total Genes:1) |
Text Mined Gene | Entrez_id | Symbol | Score | Resource(Total Genes:187) 4706 | NDUFAB1 | DISEASES 1355 | COX15 | DISEASES 5009 | OTC | DISEASES 1738 | DLD | DISEASES 79152 | FA2H | DISEASES 123263 | MTFMT | DISEASES 54332 | GDAP1 | DISEASES 4967 | OGDH | DISEASES 8050 | PDHX | DISEASES 9896 | FIG4 | DISEASES 374291 | NDUFS7 | DISEASES 9167 | COX7A2L | DISEASES 9927 | MFN2 | DISEASES 4709 | NDUFB3 | DISEASES 35 | ACADS | DISEASES 514 | ATP5E | DISEASES 57505 | AARS2 | DISEASES 50484 | RRM2B | DISEASES 1890 | TYMP | DISEASES 4695 | NDUFA2 | DISEASES 376497 | SLC27A1 | DISEASES 4705 | NDUFA10 | DISEASES 9997 | SCO2 | DISEASES 91574 | C12orf65 | DISEASES 6341 | SCO1 | DISEASES 4608 | MYBPH | DISEASES 80704 | SLC19A3 | DISEASES 51204 | TACO1 | DISEASES 51103 | NDUFAF1 | DISEASES 10128 | LRPPRC | DISEASES 10063 | COX17 | DISEASES 11019 | LIAS | DISEASES 1352 | COX10 | DISEASES 54902 | TTC19 | DISEASES 55697 | VAC14 | DISEASES 80208 | SPG11 | DISEASES 9739 | SETD1A | DISEASES 27443 | CECR2 | DISEASES 8455 | ATRN | DISEASES 7350 | UCP1 | DISEASES 3977 | LIFR | DISEASES 55572 | FOXRED1 | DISEASES 4722 | NDUFS3 | DISEASES 55669 | MFN1 | DISEASES 200576 | PIKFYVE | DISEASES 3004 | GZMM | DISEASES 10891 | PPARGC1A | DISEASES 6389 | SDHA | DISEASES 4885 | NPTX2 | DISEASES 4704 | NDUFA9 | DISEASES 5428 | POLG | DISEASES 6687 | SPG7 | DISEASES 10939 | AFG3L2 | DISEASES 4726 | NDUFS6 | DISEASES 10667 | FARS2 | DISEASES 79731 | NARS2 | DISEASES 5860 | QDPR | DISEASES 291 | SLC25A4 | DISEASES 92935 | MARS2 | DISEASES 5903 | RANBP2 | DISEASES 23250 | ATP11A | DISEASES 5018 | OXA1L | DISEASES 79178 | THTPA | DISEASES 55687 | TRMU | DISEASES 80308 | FLAD1 | DISEASES 5130 | PCYT1A | DISEASES 1293 | COL6A3 | DISEASES 91942 | NDUFAF2 | DISEASES 4724 | NDUFS4 | DISEASES 84340 | GFM2 | DISEASES 1353 | COX11 | DISEASES 1292 | COL6A2 | DISEASES 54949 | SDHAF2 | DISEASES 3960 | LGALS4 | DISEASES 55699 | IARS2 | DISEASES 7386 | UQCRFS1 | DISEASES 686 | BTD | DISEASES 5162 | PDHB | DISEASES 23209 | MLC1 | DISEASES 27235 | COQ2 | DISEASES 54968 | TMEM70 | DISEASES 28976 | ACAD9 | DISEASES 10102 | TSFM | DISEASES 4728 | NDUFS8 | DISEASES 2653 | GCSH | DISEASES 80207 | OPA3 | DISEASES 10229 | COQ7 | DISEASES 4723 | NDUFV1 | DISEASES 25915 | NDUFAF3 | DISEASES 84987 | COX14 | DISEASES 4729 | NDUFV2 | DISEASES 51218 | GLRX5 | DISEASES 83733 | SLC25A18 | DISEASES 1915 | EEF1A1 | DISEASES 55967 | NDUFA12 | DISEASES 388962 | BOLA3 | DISEASES 55256 | ADI1 | DISEASES 3141 | HLCS | DISEASES 4697 | NDUFA4 | DISEASES 7818 | DAP3 | DISEASES 1431 | CS | DISEASES 51601 | LIPT1 | DISEASES 92399 | MRRF | DISEASES 56704 | JPH1 | DISEASES 51287 | COA4 | DISEASES 91137 | SLC25A46 | DISEASES 37 | ACADVL | DISEASES 1996 | ELAVL4 | DISEASES 84677 | DSCR8 | DISEASES 84705 | GTPBP3 | DISEASES 6832 | SUPV3L1 | DISEASES 26275 | HIBCH | DISEASES 27010 | TPK1 | DISEASES 4512 | MT-CO1 | DISEASES 4519 | MT-CYB | DISEASES 4508 | MT-ATP6 | DISEASES 4541 | MT-ND6 | DISEASES 4535 | MT-ND1 | DISEASES 4539 | MT-ND4L | DISEASES 25925 | ZNF521 | DISEASES 4540 | MT-ND5 | DISEASES 4513 | MT-CO2 | DISEASES 4538 | MT-ND4 | DISEASES 4514 | MT-CO3 | DISEASES 4536 | MT-ND2 | DISEASES 55157 | DARS2 | DISEASES 1291 | COL6A1 | DISEASES 4537 | MT-ND3 | DISEASES 4509 | MT-ATP8 | DISEASES 2271 | FH | DISEASES 200205 | IBA57 | DISEASES 84947 | SERAC1 | DISEASES 54516 | MTRF1L | DISEASES 55005 | RMND1 | DISEASES 6391 | SDHC | DISEASES 4720 | NDUFS2 | DISEASES 1892 | ECHS1 | DISEASES 57107 | PDSS2 | DISEASES 29944 | PNMA3 | DISEASES 25973 | PARS2 | DISEASES 4694 | NDUFA1 | DISEASES 6834 | SURF1 | DISEASES 6130 | RPL7A | DISEASES 1678 | TIMM8A | DISEASES 4702 | NDUFA8 | DISEASES 6390 | SDHB | DISEASES 6392 | SDHD | DISEASES 7407 | VARS | DISEASES 2395 | FXN | DISEASES 79133 | NDUFAF5 | DISEASES 8803 | SUCLA2 | DISEASES 54675 | CRLS1 | DISEASES 644096 | SDHAF1 | DISEASES 9617 | MTRF1 | DISEASES 5160 | PDHA1 | DISEASES 4712 | NDUFB6 | DISEASES 1993 | ELAVL2 | DISEASES 8908 | GYG2 | DISEASES 2731 | GLDC | DISEASES 26278 | SACS | DISEASES 131118 | DNAJC19 | DISEASES 1130 | LYST | DISEASES 8802 | SUCLG1 | DISEASES 5091 | PC | DISEASES 137682 | NDUFAF6 | DISEASES 54704 | PDP1 | DISEASES 27247 | NFU1 | DISEASES 5165 | PDK3 | DISEASES 85300 | ATCAY | DISEASES 4719 | NDUFS1 | DISEASES 197 | AHSG | DISEASES 87178 | PNPT1 | DISEASES 25821 | MTO1 | DISEASES 91647 | ATPAF2 | DISEASES 85476 | GFM1 | DISEASES 51079 | NDUFA13 | DISEASES 57176 | VARS2 | DISEASES 81892 | SLIRP | DISEASES 26024 | PTCD1 | DISEASES 4782 | NFIC | DISEASES 100131801 | PET100 | DISEASES 4556 | MT-TE | DISEASES 4565 | MT-TI | DISEASES 4566 | MT-TK | DISEASES 4567 | MT-TL1 | DISEASES 4568 | MT-TL2 | DISEASES 4578 | MT-TW | DISEASES |
Locus | (Waiting for update.) |
Disease ID | 23 |
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Disease | leigh syndrome |
Manually Symptom | UMLS | Name(Total Manually Symptoms:7) |
Text Mined Symptom | UMLS | Name | Sentences' Count(Total Symptoms:1) |
Manually Genotype(Total Text Mining Genotypes:0) |
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(Waiting for update.) |
All Snps(Total Genotypes:49) | |||||||||||||
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snpId | pubmedId | geneId | geneSymbol | diseaseId | sourceId | sentence | score | Year | geneSymbol_dbSNP | CHROMOSOME | POS | REF | ALT |
rs118192098 | NA | 4566 | TRNK | umls:C0023264 | CLINVAR | NA | 0.120542884 | NA | NA | MT | 8344 | A | G |
rs118192100 | NA | 4566 | TRNK | umls:C0023264 | CLINVAR | NA | 0.120542884 | NA | NA | MT | 8363 | G | A |
rs143722284 | NA | 55699 | IARS2 | umls:C0023264 | CLINVAR | NA | 0.120271442 | NA | IARS2 | 1 | 220137990 | G | A |
rs150667550 | 20819849 | 4720 | NDUFS2 | umls:C0023264 | BeFree | The p.M292T NDUFS2 mutation causes complex I-deficient Leigh syndrome in multiple families. | 0.121085767 | 2010 | NDUFS2 | 1 | 161210599 | T | C |
rs199474657 | NA | 4567 | TRNL1 | umls:C0023264 | CLINVAR | NA | 0.12 | NA | NA | MT | 3243 | A | G |
rs199474672 | NA | 4578 | TRNW | umls:C0023264 | CLINVAR | NA | 0.120271442 | NA | NA | MT | 5537 | - | T |
rs199476104 | NA | 4541 | ND6 | umls:C0023264 | CLINVAR | NA | 0.121085767 | NA | ND6 | MT | 14484 | T | C |
rs199476105 | NA | 4541 | ND6 | umls:C0023264 | CLINVAR | NA | 0.121085767 | NA | ND6 | MT | 14459 | G | A |
rs199476109 | NA | 4541 | ND6 | umls:C0023264 | CLINVAR | NA | 0.121085767 | NA | ND6 | MT | 14487 | T | C |
rs199476112 | 21414825 | 4538 | ND4 | umls:C0023264 | BeFree | Here we report the case of a five year old girl who presented with clinical and neuroradiological findings reminiscent of Leigh syndrome but carried a mtDNA mutation m.11778G>A (p.R340H) in the MTND4 gene usually observed in patients with LHON. | 0.121357209 | 2011 | ND4 | MT | 11778 | G | A |
rs199476117 | NA | 4537 | ND3 | umls:C0023264 | CLINVAR | NA | 0.24953026 | NA | ND3 | MT | 10158 | T | C |
rs199476118 | NA | 4535 | ND1 | umls:C0023264 | CLINVAR | NA | 0.120814326 | NA | ND1 | MT | 3460 | G | A |
rs199476122 | 24830958 | 4535 | ND1 | umls:C0023264 | BeFree | Herein we report on three siblings with Leigh syndrome (LS) harboring a homoplasmic m.3697G>A mutation (G131S) in the MT-ND1 gene. | 0.120814326 | 2014 | ND1 | MT | 3697 | G | A |
rs199476133 | NA | 4508 | ATP6 | umls:C0023264 | CLINVAR | NA | 0.251691864 | NA | ATP6 | MT | 8993 | T | C,G |
rs199476135 | NA | 4508 | ATP6 | umls:C0023264 | CLINVAR | NA | 0.251691864 | NA | ATP6 | MT | 9176 | T | C,G |
rs199476136 | NA | 4508 | ATP6 | umls:C0023264 | CLINVAR | NA | 0.251691864 | NA | ATP6 | MT | 8851 | T | C |
rs199476138 | NA | 4508 | ATP6 | umls:C0023264 | CLINVAR | NA | 0.251691864 | NA | ATP6 | MT | 9185 | T | C |
rs199476138 | 24153443 | 4508 | ATP6 | umls:C0023264 | BeFree | The MT-ATP6 m.9185T>C p.Leu220Pro mutation, previously associated with Leigh syndrome, was present in all family members, while the MT-TL1 m.3271T>C mutation, a known cause of MELAS syndrome, was observed in the sole patient with MELAS presentation. | 0.251691864 | 2014 | ATP6 | MT | 9185 | T | C |
rs199476144 | NA | 4577 | TRNV | umls:C0023264 | CLINVAR | NA | 0.12 | NA | NA | MT | 1624 | C | T |
rs200911567 | NA | 4538 | ND4 | umls:C0023264 | CLINVAR | NA | 0.121357209 | NA | ND4 | MT | 11984 | T | C |
rs201431517 | NA | 123263 | MTFMT | umls:C0023264 | CLINVAR | NA | 0.120271442 | NA | MTFMT | 15 | 65021533 | G | A |
rs267606614 | NA | 4514 | COX3 | umls:C0023264 | CLINVAR | NA | 0.120542884 | NA | COX3 | MT | 9537 | - | C |
rs267606889 | NA | 4536 | ND2 | umls:C0023264 | CLINVAR | NA | 0.12272435 | NA | ND2 | MT | 4681 | T | C |
rs267606890 | NA | 4537 | ND3 | umls:C0023264 | CLINVAR | NA | 0.24953026 | NA | ND3 | MT | 10191 | T | C |
rs267606891 | NA | 4537 | ND3 | umls:C0023264 | CLINVAR | NA | 0.24953026 | NA | ND3 | MT | 10197 | G | A |
rs267606893 | NA | 4540 | ND5 | umls:C0023264 | CLINVAR | NA | 0.2489015 | NA | ND5 | MT | 12706 | T | C |
rs267606897 | NA | 4540 | ND5 | umls:C0023264 | CLINVAR | NA | 0.2489015 | NA | ND5 | MT | 13513 | G | A |
rs28384199 | NA | 4538 | ND4 | umls:C0023264 | CLINVAR | NA | 0.121357209 | NA | ND4 | MT | 11777 | C | A,G |
rs28933402 | 10746561 | 6834 | SURF1 | umls:C0023264 | UNIPROT | Missense mutations in SURF1 associated with deficient cytochrome c oxidase assembly in Leigh syndrome patients. | 0.585469386 | 2000 | SURF1 | 9 | 133353893 | C | T |
rs28939679 | 9837812 | 4728 | NDUFS8 | umls:C0023264 | UNIPROT | Cycle sequencing of amplified NDUFS8 cDNA of 20 patients with isolated enzymatic complex I deficiency revealed two compound heterozygous transitions in a patient with neuropathologically proven Leigh syndrome. | 0.360814326 | 1998 | NDUFS8;MIR4691;MIR7113 | 11 | 68033147 | C | T |
rs28939679 | 20819849 | 4719 | NDUFS1 | umls:C0023264 | BeFree | These included a novel homozygous NDUFS1 mutation in an Asian child with Leigh syndrome, a previously identified NDUFS8 mutation (c.236C>T, p.P79L) in a second Asian child with Leigh-like syndrome and six novel, compound heterozygous NDUFS2 mutations in four white Caucasian patients with Leigh or Leigh-like syndrome. | 0.003267234 | 2010 | NDUFS8;MIR4691;MIR7113 | 11 | 68033147 | C | T |
rs28939711 | 12474143 | 1355 | COX15 | umls:C0023264 | UNIPROT | Mutations in COX15 produce a defect in the mitochondrial heme biosynthetic pathway, causing early-onset fatal hypertrophic cardiomyopathy. | 0.242995792 | 2003 | COX15 | 10 | 99724057 | G | A |
rs369202065 | NA | 4508 | ATP6 | umls:C0023264 | CLINVAR | NA | 0.251691864 | NA | ATP6 | MT | 8839 | G | A,C |
rs370471013 | NA | 4578 | TRNW | umls:C0023264 | CLINVAR | NA | 0.120271442 | NA | NA | MT | 5559 | A | G |
rs373436822 | NA | 55699 | IARS2 | umls:C0023264 | CLINVAR | NA | 0.120271442 | NA | IARS2 | 1 | 220126827 | G | A |
rs386829069 | NA | 4508 | ATP6 | umls:C0023264 | CLINVAR | NA | 0.251691864 | NA | ATP6 | MT | 9191 | T | C |
rs587776433 | NA | 4535 | ND1 | umls:C0023264 | CLINVAR | NA | 0.120814326 | NA | ND1 | MT | 3481 | G | A |
rs587776434 | NA | 4535 | ND1 | umls:C0023264 | CLINVAR | NA | 0.120814326 | NA | ND1 | MT | 3890 | G | A |
rs587776435 | NA | 4578 | TRNW | umls:C0023264 | CLINVAR | NA | 0.120271442 | NA | NA | MT | 5523 | T | G |
rs587776437 | NA | 4514 | COX3 | umls:C0023264 | CLINVAR | NA | 0.120542884 | NA | COX3 | MT | 9478 | T | C |
rs587776438 | NA | 4537 | ND3 | umls:C0023264 | CLINVAR | NA | 0.24953026 | NA | ND3 | MT | 10254 | G | A |
rs587776440 | NA | 4540 | ND5 | umls:C0023264 | CLINVAR | NA | 0.2489015 | NA | ND5 | MT | 13514 | A | G |
rs587776441 | NA | 4577 | TRNV | umls:C0023264 | CLINVAR | NA | 0.12 | NA | NA | MT | 1644 | G | T |
rs587776442 | NA | 4535 | ND1 | umls:C0023264 | CLINVAR | NA | 0.120814326 | NA | ND1 | MT | 3928 | G | C |
rs587776444 | NA | 4508 | ATP6 | umls:C0023264 | CLINVAR | NA | 0.251691864 | NA | ATP6 | MT | 8989 | G | C |
rs587776497 | NA | 1892 | ECHS1 | umls:C0023264 | CLINVAR | NA | 0.120814326 | NA | ECHS1;MIR3944 | 10 | 133373332 | A | C |
rs587776498 | NA | 1892 | ECHS1 | umls:C0023264 | CLINVAR | NA | 0.120814326 | NA | ECHS1;MIR3944 | 10 | 133373329 | G | A |
rs587780529 | NA | 4537 | ND3 | umls:C0023264 | CLINVAR | NA | 0.24953026 | NA | ND3 | MT | 10134 | C | A |
rs764276946 | NA | 4728 | NDUFS8 | umls:C0023264 | CLINVAR | NA | 0.360814326 | NA | NDUFS8;MIR4691;MIR7113 | 11 | 68033254 | A | G |
GWASdb Annotation(Total Genotypes:0) | |
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GWASdb Snp Trait(Total Genotypes:0) | |
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(Waiting for update.) |
Mapped by lexical matching(Total Items:1) | ||||
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HP ID | HP Name | MP ID | MP Name | Annotation |
HP:0003128 | Lactic acidosis | MP:0003031 | acidosis;HP:0002878 | Respiratory failure |
Mapped by homologous gene(Total Items:1) | ||||
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HP ID | HP Name | MP ID | MP Name | Annotation |
HP:0000822 | Hypertension | MP:0011250 | abdominal situs ambiguus;HP:0002415 | Leukodystrophy |
Chemical(Total Drugs:0) | |
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FDA approved drug and dosage information(Total Drugs:0) | |
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FDA labeling changes(Total Drugs:0) | |
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