Home Contact Sitemap

PedAM

Pediatric Disease Annotations & Medicines



   gonadal dysgenesis
  

Disease ID 432
Disease gonadal dysgenesis
Definition
A number of syndromes with defective gonadal developments such as streak GONADS and dysgenetic testes or ovaries. The spectrum of gonadal and sexual abnormalities is reflected in their varied sex chromosome (SEX CHROMOSOMES) constitution as shown by the karyotypes of 45,X monosomy (TURNER SYNDROME); 46,XX (GONADAL DYSGENESIS, 46XX); 46,XY (GONADAL DYSGENESIS, 46,XY); and sex chromosome MOSAICISM; (GONADAL DYSGENESIS, MIXED). Their phenotypes range from female, through ambiguous, to male. This concept includes gonadal agenesis.
Synonym
dysgenesis, gonadal
gonadal dysgenesis (disorder)
gonadal dysgenesis [disease/finding]
gonadal dysgenesis nos
gonadal dysgenesis nos (disorder)
gonadal dysgenesis syndrome
DOID
UMLS
C0018051
MeSH
SNOMED-CT
Comorbidity
UMLS | Disease | Sentences' Count(Total Sentences:27)
C0206661  |  gonadoblastoma  |  4
C0035078  |  renal failure  |  3
C0013377  |  dysgerminoma  |  3
C0001623  |  adrenal failure  |  2
C0018784  |  sensorineural deafness  |  2
C0002453  |  amenorrhea  |  2
C0155550  |  neural deafness  |  2
C0021359  |  infertility  |  2
C0025362  |  mental retardation  |  2
C0041408  |  turner syndrome  |  2
C0036631  |  seminoma  |  1
C0003486  |  aortic aneurysm  |  1
C0018055  |  mixed gonadal dysgenesis  |  1
C0021053  |  immune disease  |  1
C0346180  |  malignant ovarian germ cell tumor  |  1
C0085215  |  premature ovarian failure  |  1
C0008925  |  cleft palate  |  1
C0026850  |  muscular dystrophy  |  1
C0027726  |  nephrotic syndrome  |  1
C0022658  |  renal disease  |  1
C1861922  |  campomelic dysplasia  |  1
C0014038  |  encephalitis  |  1
C0271606  |  primary ovarian failure  |  1
C0021359  |  infertile  |  1
C0221357  |  brachydactyly  |  1
C0017668  |  focal segmental glomerulosclerosis  |  1
C0020619  |  hypogonadism  |  1
Curated Gene
Entrez_id | Symbol | Resource(Total Genes:11)
FMR1  |  2332  |  CTD_human
ZFPM2  |  23414  |  GHR
NR5A1  |  2516  |  GHR
SHOX  |  6473  |  GHR
DMRT1  |  1761  |  GHR
CBX2  |  84733  |  GHR
SRY  |  6736  |  GHR
NR0B1  |  190  |  GHR
SOX9  |  6662  |  GHR
MAP3K1  |  4214  |  GHR
DHH  |  50846  |  GHR
Inferring Gene(Waiting for update.)
Text Mined Gene
Entrez_id | Symbol | Score | Resource(Total Genes:260)
60467  |  BPESC1  |  DISEASES
5009  |  OTC  |  DISEASES
7544  |  ZFY  |  DISEASES
58524  |  DMRT3  |  DISEASES
7022  |  TFAP2C  |  DISEASES
266  |  AMELY  |  DISEASES
6655  |  SOS2  |  DISEASES
57167  |  SALL4  |  DISEASES
1472  |  CST4  |  DISEASES
412  |  STS  |  DISEASES
6907  |  TBL1X  |  DISEASES
7038  |  TG  |  DISEASES
268  |  AMH  |  DISEASES
29124  |  LGALS13  |  DISEASES
973  |  CD79A  |  DISEASES
6822  |  SULT2A1  |  DISEASES
57122  |  NUP107  |  DISEASES
23438  |  HARS2  |  DISEASES
2690  |  GHR  |  DISEASES
3003  |  GZMK  |  DISEASES
5273  |  SERPINB10  |  DISEASES
5396  |  PRRX1  |  DISEASES
130399  |  ACVR1C  |  DISEASES
3623  |  INHA  |  DISEASES
4201  |  MEA1  |  DISEASES
9271  |  PIWIL1  |  DISEASES
6662  |  SOX9  |  DISEASES
8192  |  CLPP  |  DISEASES
7263  |  TST  |  DISEASES
6192  |  RPS4Y1  |  DISEASES
9084  |  VCY  |  DISEASES
353513  |  VCY1B  |  DISEASES
9426  |  CDY2A  |  DISEASES
3630  |  INS  |  DISEASES
5157  |  PDGFRL  |  DISEASES
55821  |  ALLC  |  DISEASES
9210  |  BMP15  |  DISEASES
2488  |  FSHB  |  DISEASES
10955  |  SERINC3  |  DISEASES
64328  |  XPO4  |  DISEASES
10468  |  FST  |  DISEASES
9413  |  FAM189A2  |  DISEASES
269  |  AMHR2  |  DISEASES
26525  |  IL36RN  |  DISEASES
5460  |  POU5F1  |  DISEASES
1588  |  CYP19A1  |  DISEASES
10329  |  TMEM5  |  DISEASES
5858  |  PZP  |  DISEASES
29954  |  POMT2  |  DISEASES
23316  |  CUX2  |  DISEASES
6845  |  VAMP7  |  DISEASES
5613  |  PRKX  |  DISEASES
25939  |  SAMHD1  |  DISEASES
2255  |  FGF10  |  DISEASES
5443  |  POMC  |  DISEASES
5523  |  PPP2R3A  |  DISEASES
51663  |  ZFR  |  DISEASES
1062  |  CENPE  |  DISEASES
7320  |  UBE2B  |  DISEASES
8395  |  PIP5K1B  |  DISEASES
23395  |  LARS2  |  DISEASES
50846  |  DHH  |  DISEASES
1583  |  CYP11A1  |  DISEASES
2622  |  GAS8  |  DISEASES
3487  |  IGFBP4  |  DISEASES
7483  |  WNT9A  |  DISEASES
23500  |  DAAM2  |  DISEASES
3484  |  IGFBP1  |  DISEASES
346673  |  STRA8  |  DISEASES
57502  |  NLGN4X  |  DISEASES
2796  |  GNRH1  |  DISEASES
6770  |  STAR  |  DISEASES
25836  |  NIPBL  |  DISEASES
3773  |  KCNJ16  |  DISEASES
9087  |  TMSB4Y  |  DISEASES
9372  |  ZFYVE9  |  DISEASES
3815  |  KIT  |  DISEASES
26060  |  APPL1  |  DISEASES
257397  |  TAB3  |  DISEASES
54361  |  WNT4  |  DISEASES
326  |  AIRE  |  DISEASES
51043  |  ZBTB7B  |  DISEASES
30812  |  SOX8  |  DISEASES
3973  |  LHCGR  |  DISEASES
3625  |  INHBB  |  DISEASES
8820  |  HESX1  |  DISEASES
2661  |  GDF9  |  DISEASES
122042  |  RXFP2  |  DISEASES
5702  |  PSMC3  |  DISEASES
9317  |  PTER  |  DISEASES
143689  |  PIWIL4  |  DISEASES
5617  |  PRL  |  DISEASES
9081  |  PRY  |  DISEASES
51523  |  CXXC5  |  DISEASES
3479  |  IGF1  |  DISEASES
9085  |  CDY1  |  DISEASES
253175  |  CDY1B  |  DISEASES
442862  |  PRY2  |  DISEASES
5940  |  RBMY1A1  |  DISEASES
442866  |  PRYP4  |  DISEASES
10114  |  HIPK3  |  DISEASES
7543  |  ZFX  |  DISEASES
10655  |  DMRT2  |  DISEASES
8507  |  ENC1  |  DISEASES
5151  |  PDE8A  |  DISEASES
2688  |  GH1  |  DISEASES
666  |  BOK  |  DISEASES
254394  |  MCM9  |  DISEASES
8239  |  USP9X  |  DISEASES
64755  |  C16orf58  |  DISEASES
8630  |  HSD17B6  |  DISEASES
7173  |  TPO  |  DISEASES
10734  |  STAG3  |  DISEASES
6764  |  ST5  |  DISEASES
50619  |  DEF6  |  DISEASES
137814  |  NKX2-6  |  DISEASES
10782  |  ZNF274  |  DISEASES
1730  |  DIAPH2  |  DISEASES
2274  |  FHL2  |  DISEASES
8243  |  SMC1A  |  DISEASES
7791  |  ZYX  |  DISEASES
633  |  BGN  |  DISEASES
90665  |  TBL1Y  |  DISEASES
7404  |  UTY  |  DISEASES
9083  |  BPY2  |  DISEASES
5069  |  PAPPA  |  DISEASES
7490  |  WT1  |  DISEASES
5813  |  PURA  |  DISEASES
344018  |  FIGLA  |  DISEASES
668  |  FOXL2  |  DISEASES
80258  |  EFHC2  |  DISEASES
2626  |  GATA4  |  DISEASES
8856  |  NR1I2  |  DISEASES
8653  |  DDX3Y  |  DISEASES
8409  |  UXT  |  DISEASES
554  |  AVPR2  |  DISEASES
7317  |  UBA1  |  DISEASES
2261  |  FGFR3  |  DISEASES
6932  |  TCF7  |  DISEASES
347344  |  ZNF81  |  DISEASES
93426  |  SYCE1  |  DISEASES
342977  |  NANOS3  |  DISEASES
442865  |  PRYP3  |  DISEASES
8287  |  USP9Y  |  DISEASES
57515  |  SERINC1  |  DISEASES
389073  |  C2orf80  |  DISEASES
28986  |  MAGEH1  |  DISEASES
2624  |  GATA2  |  DISEASES
1861  |  TOR1A  |  DISEASES
6925  |  TCF4  |  DISEASES
170685  |  NUDT10  |  DISEASES
284654  |  RSPO1  |  DISEASES
4763  |  NF1  |  DISEASES
7789  |  ZXDA  |  DISEASES
26191  |  PTPN22  |  DISEASES
1756  |  DMD  |  DISEASES
56956  |  LHX9  |  DISEASES
1490  |  CTGF  |  DISEASES
922  |  CD5L  |  DISEASES
632  |  BGLAP  |  DISEASES
7259  |  TSPYL1  |  DISEASES
8038  |  ADAM12  |  DISEASES
2018  |  EMX2  |  DISEASES
26227  |  PHGDH  |  DISEASES
2316  |  FLNA  |  DISEASES
1586  |  CYP17A1  |  DISEASES
164045  |  HFM1  |  DISEASES
2332  |  FMR1  |  DISEASES
6658  |  SOX3  |  DISEASES
2778  |  GNAS  |  DISEASES
27022  |  FOXD3  |  DISEASES
8675  |  STX16  |  DISEASES
115209  |  OMA1  |  DISEASES
23626  |  SPO11  |  DISEASES
8464  |  SUPT3H  |  DISEASES
4337  |  MOCS1  |  DISEASES
5230  |  PGK1  |  DISEASES
546  |  ATRX  |  DISEASES
8565  |  YARS  |  DISEASES
5255  |  PHKA1  |  DISEASES
2516  |  NR5A1  |  DISEASES
6191  |  RPS4X  |  DISEASES
347735  |  SERINC2  |  DISEASES
9968  |  MED12  |  DISEASES
8518  |  IKBKAP  |  DISEASES
367  |  AR  |  DISEASES
158586  |  ZXDB  |  DISEASES
3293  |  HSD17B3  |  DISEASES
3055  |  HCK  |  DISEASES
4524  |  MTHFR  |  DISEASES
30813  |  VSX1  |  DISEASES
128821  |  CST9L  |  DISEASES
5568  |  PRKACG  |  DISEASES
57623  |  ZFAT  |  DISEASES
390992  |  HES3  |  DISEASES
56287  |  GKN1  |  DISEASES
7403  |  KDM6A  |  DISEASES
3980  |  LIG3  |  DISEASES
84515  |  MCM8  |  DISEASES
53940  |  FTHL17  |  DISEASES
80231  |  CXorf21  |  DISEASES
190  |  NR0B1  |  DISEASES
4112  |  MAGEB1  |  DISEASES
57393  |  TMEM27  |  DISEASES
6462  |  SHBG  |  DISEASES
265  |  AMELX  |  DISEASES
8228  |  PNPLA4  |  DISEASES
3486  |  IGFBP3  |  DISEASES
415  |  ARSE  |  DISEASES
4267  |  CD99  |  DISEASES
8623  |  ASMTL  |  DISEASES
6473  |  SHOX  |  DISEASES
10771  |  ZMYND11  |  DISEASES
1761  |  DMRT1  |  DISEASES
442868  |  BPY2C  |  DISEASES
2254  |  FGF9  |  DISEASES
6624  |  FSCN1  |  DISEASES
442867  |  BPY2B  |  DISEASES
203611  |  CDY2B  |  DISEASES
6736  |  SRY  |  DISEASES
28227  |  PPP2R3B  |  DISEASES
29893  |  PSMC3IP  |  DISEASES
65057  |  ACD  |  DISEASES
6152  |  RPL24  |  DISEASES
10813  |  UTP14A  |  DISEASES
174  |  AFP  |  DISEASES
54704  |  PDP1  |  DISEASES
4650  |  MYO9B  |  DISEASES
2887  |  GRB10  |  DISEASES
4214  |  MAP3K1  |  DISEASES
57728  |  WDR19  |  DISEASES
81929  |  SEH1L  |  DISEASES
23414  |  ZFPM2  |  DISEASES
1617  |  DAZ1  |  DISEASES
6654  |  SOS1  |  DISEASES
2492  |  FSHR  |  DISEASES
729920  |  ISPD  |  DISEASES
2641  |  GCG  |  DISEASES
3481  |  IGF2  |  DISEASES
1438  |  CSF2RA  |  DISEASES
11105  |  PRDM7  |  DISEASES
6474  |  SHOX2  |  DISEASES
57135  |  DAZ4  |  DISEASES
7258  |  TSPY1  |  DISEASES
100289087  |  TSPY10  |  DISEASES
7499  |  XG  |  DISEASES
10046  |  MAMLD1  |  DISEASES
3483  |  IGFALS  |  DISEASES
135935  |  NOBOX  |  DISEASES
3295  |  HSD17B4  |  DISEASES
10687  |  PNMA2  |  DISEASES
404635  |  NANOGP1  |  DISEASES
246744  |  STH  |  DISEASES
64426  |  SUDS3  |  DISEASES
8284  |  KDM5D  |  DISEASES
85316  |  BAGE5  |  DISEASES
100169750  |  PRINS  |  DISEASES
50858  |  TTTY1  |  DISEASES
60439  |  TTTY2  |  DISEASES
7503  |  XIST  |  DISEASES
Locus(Waiting for update.)
Disease ID 432
Disease gonadal dysgenesis
Integrated Phenotype(Waiting for update.)
Text Mined Phenotype
HPO | Name | Sentences' Count(Total Phenotypes:33)
HP:0000150  |  Gonadoblastoma  |  4
HP:0002664  |  Neoplasia  |  4
HP:0012245  |  Sex reversal  |  4
HP:0000083  |  Renal insufficiency  |  3
HP:0100621  |  Dysgerminoma  |  3
HP:0001249  |  Mental retardation  |  2
HP:0000786  |  Primary amenorrhea  |  2
HP:0000789  |  Infertility  |  2
HP:0000365  |  Hearing impairment  |  2
HP:0004322  |  Stature below 3rd percentile  |  2
HP:0000407  |  sensorineural hearing loss  |  2
HP:0000141  |  Abnormal absence of menstruation  |  2
HP:0000078  |  Genital abnormalities  |  1
HP:0003560  |  Muscular dystrophy  |  1
HP:0000135  |  Hypogonadism  |  1
HP:0000013  |  Underdeveloped uterus  |  1
HP:0002383  |  Encephalitis  |  1
HP:0100728  |  Germ cell neoplasia  |  1
HP:0000175  |  Palatoschisis  |  1
HP:0000133  |  Mixed gonadal dysgenesis  |  1
HP:0002631  |  Ascending aortic aneurysm  |  1
HP:0002960  |  Autoimmune condition  |  1
HP:0008209  |  Premature ovarian failure  |  1
HP:0000100  |  Nephrosis  |  1
HP:0000047  |  Hypospadias  |  1
HP:0000815  |  Primary hypogonadism  |  1
HP:0004942  |  Aortic aneurysm  |  1
HP:0000097  |  focal glomerulosclerosis  |  1
HP:0001374  |  Congenital hip dislocation  |  1
HP:0001156  |  Brachydactyly  |  1
HP:0002617  |  Aneurysmal dilatation  |  1
HP:0012588  |  Steroid-resistant nephrotic syndrome  |  1
HP:0001587  |  Primary ovarian insufficiency  |  1
Disease ID 432
Disease gonadal dysgenesis
Manually Symptom
UMLS  | Name(Total Manually Symptoms:24)
C2697402  |  hypogonadotropic hypogonadism
C2219717  |  amenorrhea
C1420725  |  thymoma
C1368683  |  epithelial tumour
C1153706  |  adenocarcinoma of the endometrium
C0920350  |  hashimoto's thyroiditis
C0476089  |  endometrial carcinoma
C0376293  |  stigmata
C0345335  |  multicystic kidney
C0334524  |  mixed germ cell tumor
C0279668  |  adenocarcinoma of the vagina
C0271606  |  primary ovarian failure
C0232940  |  secondary amenorrhea
C0232939  |  primary amenorrhea
C0221406  |  cushing's disease
C0206661  |  gonadoblastoma
C0206650  |  fibroadenoma
C0020676  |  hypothyroidism
C0015799  |  feminization
C0014175  |  endometriosis
C0014173  |  endometrial hyperplasia
C0011849  |  diabetes mellitus
C0003496  |  aortic rupture
C0001080  |  achondroplasia
Text Mined Symptom
UMLS | Name | Sentences' Count(Total Symptoms:4)
C0206661  |  gonadoblastoma  |  4
C0002453  |  amenorrhea  |  2
C0232939  |  primary amenorrhea  |  2
C0271606  |  primary ovarian failure  |  1
Manually Genotype(Total Text Mining Genotypes:0)
(Waiting for update.)
All Snps(Total Genotypes:8)
snpId pubmedId geneId geneSymbol diseaseId sourceId sentence score Year geneSymbol_dbSNP CHROMOSOME POS REF ALT
rs104894118154721712516NR5A1umls:C0018051BeFreeFour human SF1 gene mutations have been described to date: three (G35E, R92Q, R255L) were responsible for adrenal insufficiency associated with a gonadal dysgenesis in two 46, XY individuals, one (8 bp deletion in exon 6) resulted in gonadal dysgenesis without adrenal insufficiency.0.0054387692004NR5A19124500196CA
rs104894119154721712516NR5A1umls:C0018051BeFreeFour human SF1 gene mutations have been described to date: three (G35E, R92Q, R255L) were responsible for adrenal insufficiency associated with a gonadal dysgenesis in two 46, XY individuals, one (8 bp deletion in exon 6) resulted in gonadal dysgenesis without adrenal insufficiency.0.0054387692004NR5A19124500685CT
rs10489496681050866736SRYumls:C0018051BeFreeA new de novo mutation (A113T) in HMG box of the SRY gene leads to XY gonadal dysgenesis.0.0171306331993SRYY2787267CT
rs10489497195215926736SRYumls:C0018051BeFreeA novel missense mutation (S18N) in the 5' non-HMG box region of the SRY gene in a patient with partial gonadal dysgenesis and his normal male relatives.0.0171306331998SRYY2787551CT
rs104894972108524656736SRYumls:C0018051BeFreeIdentification of a new missense mutation (Gly95Glu) in a highly conserved codon within the high-mobility group box of the sex-determining region Y gene: report on a 46,XY female with gonadal dysgenesis and yolk-sac tumor.0.0171306332000SRYY2787320CT
rs121918654154721712516NR5A1umls:C0018051BeFreeFour human SF1 gene mutations have been described to date: three (G35E, R92Q, R255L) were responsible for adrenal insufficiency associated with a gonadal dysgenesis in two 46, XY individuals, one (8 bp deletion in exon 6) resulted in gonadal dysgenesis without adrenal insufficiency.0.0054387692004NANANANANA
rs121918655204533122516NR5A1umls:C0018051BeFreeComplete XY gonadal dysgenesis due to p.D293N homozygous mutation in the NR5A1 gene: a case study.0.0054387692010NR5A19124493143CT
rs121918655204533126736SRYumls:C0018051BeFreeHere we describe a case of XY complete gonadal dysgenesis due to a p.D293N homozygous mutation in the NR5A1 gene, with normal SRY and no adrenal failure.0.0171306332010NR5A19124493143CT
GWASdb Annotation(Total Genotypes:0)
(Waiting for update.)
GWASdb Snp Trait(Total Genotypes:0)
(Waiting for update.)
Mapped by lexical matching(Total Items:0)
(Waiting for update.)
Mapped by homologous gene(Total Items:0)
(Waiting for update.)
Chemical(Total Drugs:1)
CUI ChemicalName ChemicalID CasRN DiseaseName DiseaseID DirectEvidence PubMedIDs
C0018051progesteroneD01137457-83-0gonadal dysgenesisMESH:D006059therapeutic2673747
FDA approved drug and dosage information(Total Drugs:0)
(Waiting for update.)
FDA labeling changes(Total Drugs:0)
(Waiting for update.)