generalized anxiety disorder |
Disease ID | 807 |
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Disease | generalized anxiety disorder |
Integrated Phenotype | (Waiting for update.) |
Text Mined Phenotype | HPO | Name | Sentences' Count(Total Phenotypes:17) HP:0000739 | Anxiety | 14 HP:0000756 | Fear of open spaces | 13 HP:0000716 | Depression | 9 HP:0003763 | Bruxism | 2 HP:0011675 | Arrhythmias | 1 HP:0001539 | Omphalocele | 1 HP:0001397 | Hepatic steatosis | 1 HP:0000360 | Ringing in the ears | 1 HP:0002315 | Headaches | 1 HP:0012115 | Liver inflammation | 1 HP:0000147 | Sclerocystic ovaries | 1 HP:0001511 | Prenatal onset growth retardation | 1 HP:0100710 | Impulsivity | 1 HP:0000708 | Behavioral problems | 1 HP:0002500 | Leukoaraiosis | 1 HP:0002360 | Sleep disturbance | 1 HP:0100543 | Cognitive deficits | 1 |
Disease ID | 807 |
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Disease | generalized anxiety disorder |
Manually Symptom | (Waiting for update.) |
Text Mined Symptom | UMLS | Name | Sentences' Count(Total Symptoms:1) |
Manually Genotype(Total Text Mining Genotypes:0) |
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(Waiting for update.) |
All Snps(Total Genotypes:12) | |||||||||||||
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snpId | pubmedId | geneId | geneSymbol | diseaseId | sourceId | sentence | score | Year | geneSymbol_dbSNP | CHROMOSOME | POS | REF | ALT |
rs12454712 | 20122683 | 596 | BCL2 | umls:C0270549 | BeFree | BCL2 rs12454712 (p = .0029) and DRD2 rs4245146 (p = .0010) showed evidence for association to generalized anxiety disorder, whereas rs2463107 (p = .0064) in PAWR and rs4245146 (p = .0029) in DRD2 showed evidence for association to the pooled group of all anxiety disorders. | 0.000271442 | 2010 | BCL2 | 18 | 63178651 | T | C |
rs12454712 | 20122683 | 5074 | PAWR | umls:C0270549 | BeFree | BCL2 rs12454712 (p = .0029) and DRD2 rs4245146 (p = .0010) showed evidence for association to generalized anxiety disorder, whereas rs2463107 (p = .0064) in PAWR and rs4245146 (p = .0029) in DRD2 showed evidence for association to the pooled group of all anxiety disorders. | 0.000271442 | 2010 | BCL2 | 18 | 63178651 | T | C |
rs12454712 | 20122683 | 1813 | DRD2 | umls:C0270549 | BeFree | BCL2 rs12454712 (p = .0029) and DRD2 rs4245146 (p = .0010) showed evidence for association to generalized anxiety disorder, whereas rs2463107 (p = .0064) in PAWR and rs4245146 (p = .0029) in DRD2 showed evidence for association to the pooled group of all anxiety disorders. | 0.000542884 | 2010 | BCL2 | 18 | 63178651 | T | C |
rs2463107 | 20122683 | 1813 | DRD2 | umls:C0270549 | BeFree | BCL2 rs12454712 (p = .0029) and DRD2 rs4245146 (p = .0010) showed evidence for association to generalized anxiety disorder, whereas rs2463107 (p = .0064) in PAWR and rs4245146 (p = .0029) in DRD2 showed evidence for association to the pooled group of all anxiety disorders. | 0.000542884 | 2010 | NA | 12 | 79699537 | A | C |
rs2463107 | 20122683 | 596 | BCL2 | umls:C0270549 | BeFree | BCL2 rs12454712 (p = .0029) and DRD2 rs4245146 (p = .0010) showed evidence for association to generalized anxiety disorder, whereas rs2463107 (p = .0064) in PAWR and rs4245146 (p = .0029) in DRD2 showed evidence for association to the pooled group of all anxiety disorders. | 0.000271442 | 2010 | NA | 12 | 79699537 | A | C |
rs2463107 | 20122683 | 5074 | PAWR | umls:C0270549 | BeFree | BCL2 rs12454712 (p = .0029) and DRD2 rs4245146 (p = .0010) showed evidence for association to generalized anxiety disorder, whereas rs2463107 (p = .0064) in PAWR and rs4245146 (p = .0029) in DRD2 showed evidence for association to the pooled group of all anxiety disorders. | 0.000271442 | 2010 | NA | 12 | 79699537 | A | C |
rs386602276 | 11444684 | 3356 | HTR2A | umls:C0270549 | BeFree | The authors tested for association of the 5-HT2A receptor polymorphism (T102C) and the intron 7 tryptophan hydroxylase (TPH) polymorphism (A218C) among 176 alcohol dependent patients, 35 patients with panic disorder, 50 patients with generalized anxiety disorder, 55 patients with narcolepsy and 87 healthy controls. | 0.000814326 | 2001 | NA | NA | NA | NA | NA |
rs4245146 | 20122683 | 596 | BCL2 | umls:C0270549 | BeFree | BCL2 rs12454712 (p = .0029) and DRD2 rs4245146 (p = .0010) showed evidence for association to generalized anxiety disorder, whereas rs2463107 (p = .0064) in PAWR and rs4245146 (p = .0029) in DRD2 showed evidence for association to the pooled group of all anxiety disorders. | 0.000271442 | 2010 | DRD2 | 11 | 113447251 | T | C |
rs4245146 | 20122683 | 5074 | PAWR | umls:C0270549 | BeFree | BCL2 rs12454712 (p = .0029) and DRD2 rs4245146 (p = .0010) showed evidence for association to generalized anxiety disorder, whereas rs2463107 (p = .0064) in PAWR and rs4245146 (p = .0029) in DRD2 showed evidence for association to the pooled group of all anxiety disorders. | 0.000271442 | 2010 | DRD2 | 11 | 113447251 | T | C |
rs4245146 | 20122683 | 1813 | DRD2 | umls:C0270549 | BeFree | BCL2 rs12454712 (p = .0029) and DRD2 rs4245146 (p = .0010) showed evidence for association to generalized anxiety disorder, whereas rs2463107 (p = .0064) in PAWR and rs4245146 (p = .0029) in DRD2 showed evidence for association to the pooled group of all anxiety disorders. | 0.000542884 | 2010 | DRD2 | 11 | 113447251 | T | C |
rs4792888 | 22249355 | 1394 | CRHR1 | umls:C0270549 | BeFree | Only rs4792888 in CRHR1 showed modest evidence of association with duloxetine response in MDD (P=0.029 in GAD, P=0.054 in MDD). | 0.000542884 | 2013 | CRHR1;MGC57346-CRHR1 | 17 | 45800588 | A | G |
rs6313 | 11444684 | 3356 | HTR2A | umls:C0270549 | BeFree | The authors tested for association of the 5-HT2A receptor polymorphism (T102C) and the intron 7 tryptophan hydroxylase (TPH) polymorphism (A218C) among 176 alcohol dependent patients, 35 patients with panic disorder, 50 patients with generalized anxiety disorder, 55 patients with narcolepsy and 87 healthy controls. | 0.000814326 | 2001 | HTR2A | 13 | 46895805 | G | A |
GWASdb Annotation(Total Genotypes:10) | |||||||||||||||||||||||||||||||||||||
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Chr | Pos | SNP_Id | RefGene | EnsemblGene | ENCODE_Factor | ENCODE_TFBS | Chromosome_interaction | GTEx_eQTL | SNP_TFBS_affinity_GWAS3D | SNP_miRNA_target_affinity_PolymiRTS | SNP_splicing_effect_Skippy | SNP_splicing_effect_MutPred_Splice | SNP_ns_protein_effect_dbNSFP | SNP_syn_effect_Silva | SNP_phosphorylation_effect_PhosSNP | PhastCons_score | PhyloP_score | GERP++_RS | Segway_state | Ancestral_allele | ESP_AF | ESP_AFR | ESP_AFR | ESP_EUR | TG_ASN | TG_AMR | TG_AFR | TG_EUR | Type | Consequence | bStatistic | EncH3K27Ac | EncH3K4Me1 | EncH3K4Me3 | EncNucleo | OMIM | Clinvar |
2 | 171688593 | rs10191129 | NM_000817,GAD1 | NM_013445,GAD1 | ENST00000358196,ENSG00000128683 | ENST00000375273,ENSG00000128683 | ENST00000493875,ENSG00000128683 | ENST00000414527,ENSG00000128683 | ENST00000375272,ENSG00000128683 | ENST00000344257,ENSG00000128683 | ENST00000429023,ENSG00000128683 | ENST00000493270,ENSG00000128683 | MCV-2 | NA | chr2,171680001,171690000,chr9,44590001,44600000,18,Hi-C | NA | Cha4-primary,3.4605 | Cutl1_3494,1.4168 | Gln3-primary,1.544 | Gzf3-primary,1.9512 | Hoxc13_3127,1.3052 | NA | NA | NA | NA | NA | NA | 0.038 | 0.380 | 1.43 | GM0 | C | NA | NA | NA | NA | NA |
2 | 171695070 | rs3791853 | NM_000817,GAD1 | NM_013445,GAD1 | ENST00000358196,ENSG00000128683 | ENST00000375273,ENSG00000128683 | ENST00000493875,ENSG00000128683 | ENST00000414527,ENSG00000128683 | ENST00000375272,ENSG00000128683 | ENST00000344257,ENSG00000128683 | ENST00000429023,ENSG00000128683 | NA | NA | chr2,171690001,171700000,chr12,88780001,88790000,4,Hi-C | chr2,171690001,171700000,chr2,172330001,172340000,5,Hi-C | chr2,171690001,171700000,chr14,39570001,39580000,6,Hi-C | NA | Lys14-primary,1.4423 | Pho2-DBD-primary,3.5931 | Smp1-primary,4.7276 | Yrm1-primary,2.1908 | Yrr1-FL-primary,1.4803 | NA | NA | NA | NA | NA | NA | 0.000 | -0.344 | -2.13 | R4 | G | NA | NA | NA | NA |
22 | 40303934 | rs137963 | NM_004810,GRAP2 | ENST00000344138,ENSG00000100351 | MCV-4 | TFP.USF2 | NA | chr22,40300001,40310000,chr22,40930001,40940000,7,Hi-C | chr22,40300001,40310000,chr10,37260001,37270000,8,Hi-C | chr22,40300001,40310000,chr2,61030001,61040000,8,Hi-C | NA | LM90,1.4251 | LM90,1.5106 | LM120,2.0575 | LM128,1.3303 | Arnt,10.7157 | NA | NA | NA | NA | NA | NA | 0.000 | -1.984 | -4.81 | GM1 | C | NA | NA | NA | NA | NA | NA | NA | NA | Transcript | INTRONIC |
22 | 40320361 | rs137977 | NM_004810,GRAP2 | ENST00000344138,ENSG00000100351 | NA | NA | NA | NA | Cutl1_3494,3.842 | Cutl1_3494,7.3201 | Hoxa5_3415,5.0077 | Hoxc8_3429,10.1588 | Rsc3-primary,1.9231 | NA | NA | NA | NA | NA | NA | 0.000 | -0.014 | 0.112 | TF2 | A | NA | NA | NA | 0.600 | 0.740 | 0.470 | 0.840 | 0.420 | Transcript | INTRONIC | 667 | 1.08 | 5.64 |
22 | 40336845 | rs137989 | NM_004810,GRAP2 | ENST00000344138,ENSG00000100351 | ENST00000420971,ENSG00000100351 | ENST00000478445,ENSG00000100351 | ENST00000461082,ENSG00000100351 | MCV-4 | TFP.RAD21 | TFP.SMC3 | TFP.CTCF | NA | NA | NA | Pax-5,3.683 | Cart-1,1.6686 | HTF,9.003 | RFX,5.1188 | FOXP3,3.726 | NA | NA | NA | NA | NA | NA | 0.001 | 0.910 | 2.93 | C1 | T | NA | NA | NA | NA | NA | NA | NA |
22 | 40340775 | rs137991 | NM_004810,GRAP2 | ENST00000344138,ENSG00000100351 | ENST00000420971,ENSG00000100351 | ENST00000478445,ENSG00000100351 | ENST00000461082,ENSG00000100351 | NA | NA | chr22,40340001,40350000,chr9,113170001,113180000,6,Hi-C | chr22,40340001,40350000,chr10,81960001,81970000,7,Hi-C | chr22,40340001,40350000,chr12,69000001,69010000,6,Hi-C | chr22,40340001,40350000,chr15,74640001,74650000,9,Hi-C | NA | Gal4-primary,1.3497 | Gal4-primary,1.3403 | Lhx6_2272,2.3444 | Rph1-primary,1.7391 | LM134,2.2951 | NA | NA | NA | NA | NA | NA | 0.001 | 0.199 | 0.926 | E/GM | T | NA | NA | NA | NA | NA | NA | NA |
22 | 40348520 | rs2267420 | NM_004810,GRAP2 | ENST00000344138,ENSG00000100351 | ENST00000420971,ENSG00000100351 | ENST00000478445,ENSG00000100351 | ENST00000407075,ENSG00000100351 | MCV-4 | NA | chr22,40340001,40350000,chr9,113170001,113180000,6,Hi-C | chr22,40340001,40350000,chr10,81960001,81970000,7,Hi-C | chr22,40340001,40350000,chr12,69000001,69010000,6,Hi-C | chr22,40340001,40350000,chr15,74640001,74650000,9,Hi-C | NA | Cha4-primary,1.5884 | Mig2-primary,1.5883 | Mig3-primary,1.3813 | Pbf1-primary,1.6666 | Pbf2-primary,2.4298 | NA | NA | NA | NA | NA | NA | 0.000 | -0.710 | -4.36 | GM1 | A | NA | NA | NA | 0.110 | 0.120 | 0.110 | 0.020 |
22 | 40357667 | rs9611234 | NM_004810,GRAP2 | ENST00000344138,ENSG00000100351 | ENST00000478445,ENSG00000100351 | ENST00000407075,ENSG00000100351 | ENST00000424496,ENSG00000225528 | TFP.CEBPB | TFP.STAT3 | TFP.TCF12 | TFP.FOSL1 | TFP.EP300 | TFP.JUND | TFP.MAX | CHMM | TFP.HDAC2 | TFP.JUN | TFP.E2F6 | TFP.FOS | TFP.JUNB | TFP.MYC | TFP.PAX5 | TFP.MAFK | TFP.IRF4 | TFP.BCL11A | TFP.RXRA | TFP.GATA2 | TFP.CCNT2 | TFP.BATF | TFP.TAL1 | TFP.POU2F2 | MCV-85 | NA | chr22,40350001,40360000,chr2,96710001,96720000,246,Hi-C | chr22,40350001,40360000,chr4,190700001,190710000,5,Hi-C | NA | LM9,3.4226 |
22 | 40362946 | rs138006 | NM_004810,GRAP2 | ENST00000344138,ENSG00000100351 | ENST00000478445,ENSG00000100351 | ENST00000407075,ENSG00000100351 | ENST00000481263,ENSG00000100351 | TFP.JUND | CHMM | TFP.CEBPB | TFP.EP300 | TFP.TBP | TFP.STAT3 | TFP.GATA1 | MCV-2 | NA | chr22,40360001,40370000,chr19,14300001,14310000,30,Hi-C | chr22,40360001,40370000,chr22,39010001,39020000,5,Hi-C | chr22,40360001,40370000,chr22,42970001,42980000,12,Hi-C | NA | MEF-2,1.3035 | PR,1.2838 | PR,1.2639 | SRF,16.2319 | NA | NA | NA | NA | NA | NA | 0.000 | 0.268 | 0.814 | E/GM | G | NA | NA |
22 | 40363778 | rs2284078 | NM_004810,GRAP2 | ENST00000344138,ENSG00000100351 | ENST00000407075,ENSG00000100351 | ENST00000481263,ENSG00000100351 | CHMM | TFP.CEBPB | TFP.TBP | TFP.GATA1 | TFP.TFAP2C | TFP.TFAP2A | TFP.EP300 | TFP.GATA2 | TFP.CCNT2 | TFP.TAL1 | NA | chr22,40360001,40370000,chr19,14300001,14310000,30,Hi-C | chr22,40360001,40370000,chr22,39010001,39020000,5,Hi-C | chr22,40360001,40370000,chr22,42970001,42980000,12,Hi-C | NA | Nkx2-9_3082,1.8884 | Obox1_3970,1.3041 | Obox6_3440,2.3031 | Rsc30-primary,1.3003 | Rsc30-primary,2.1369 | NA | NA | NA | NA | NA | NA | 0.000 | -0.591 | -2.68 | GM0 | A |
GWASdb Snp Trait(Total Genotypes:0) | |
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(Waiting for update.) |
Mapped by lexical matching(Total Items:0) |
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(Waiting for update.) |
Mapped by homologous gene(Total Items:0) |
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(Waiting for update.) |
Chemical(Total Drugs:0) | |
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(Waiting for update.) |
FDA approved drug and dosage information(Total Drugs:0) | |
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(Waiting for update.) |
FDA labeling changes(Total Drugs:0) | |
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(Waiting for update.) |