achondroplasia |
Disease ID | 11 |
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Disease | achondroplasia |
Integrated Phenotype | HPO | Name(Total Integrated Phenotypes:43) HP:0002808 | Kyphosis HP:0000389 | Chronic otitis media HP:0003312 | Abnormal form of the vertebral bodies HP:0000689 | Dental malocclusion HP:0003307 | Hyperlordosis HP:0002104 | Apnea HP:0000774 | Narrow chest HP:0005692 | Joint hyperflexibility HP:0002870 | Obstructive sleep apnea HP:0006487 | Bowing of the long bones HP:0000678 | Dental crowding HP:0000238 | Hydrocephalus HP:0003042 | Elbow dislocation HP:0002867 | Abnormality of the ilium HP:0003416 | Spinal canal stenosis HP:0001260 | Dysarthria HP:0001252 | Muscular hypotonia HP:0000956 | Acanthosis nigricans HP:0001513 | Obesity HP:0000405 | Conductive hearing impairment HP:0002007 | Frontal bossing HP:0001645 | Sudden cardiac death HP:0011800 | Midface retrusion HP:0100818 | Long thorax HP:0005019 | Diaphyseal thickening HP:0005280 | Depressed nasal bridge HP:0000256 | Macrocephaly HP:0000975 | Hyperhidrosis HP:0002167 | Neurological speech impairment HP:0002645 | Wormian bones HP:0008873 | Disproportionate short-limb short stature HP:0008921 | Neonatal short-limb short stature HP:0001511 | Intrauterine growth retardation HP:0002119 | Ventriculomegaly HP:0002970 | Genu varum HP:0008803 | Narrow sacroiliac notch HP:0000772 | Abnormality of the ribs HP:0000463 | Anteverted nares HP:0001387 | Joint stiffness HP:0001522 | Death in infancy HP:0000944 | Abnormality of the metaphyses HP:0008905 | Rhizomelia HP:0009811 | Abnormality of the elbow |
Text Mined Phenotype | HPO | Name | Sentences' Count(Total Phenotypes:20) HP:0001263 | Developmental retardation | 6 HP:0003416 | Spinal canal stenosis | 4 HP:0004322 | Stature below 3rd percentile | 3 HP:0000238 | Nonsyndromal hydrocephalus | 2 HP:0002025 | Narrowing of anal opening | 1 HP:0009826 | limb shortening | 1 HP:0000677 | Failure of development of more than six teeth | 1 HP:0010550 | Paraplegia | 1 HP:0000563 | Conical cornea | 1 HP:0001380 | Joint ligamentous laxity | 1 HP:0003498 | Disproportionate short stature | 1 HP:0030038 | Enchondroma | 1 HP:0002808 | Gibbus deformity | 1 HP:0003508 | Short stature, proportionate | 1 HP:0004610 | Narrow lumbar spinal canal | 1 HP:0003510 | Proportionate dwarfism | 1 HP:0008454 | Rounded lower back | 1 HP:0005619 | Thoracolumbar kyphosis | 1 HP:0004565 | Severe platyspondyly | 1 HP:0001363 | Early fusion of cranial sutures | 1 |
Disease ID | 11 |
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Disease | achondroplasia |
Manually Symptom | UMLS | Name(Total Manually Symptoms:39) C2632116 | stenosis C2364324 | increased intracranial pressure C2029884 | hearing loss C2018359 | lumbar canal stenosis C1963220 | pulmonary hypertension C1963185 | obesity C1963137 | hydrocephalus C1956346 | coronary artery disease C1660797 | urological problem C1290147 | lumbar spine disease C0852866 | cervical cord compression C0752303 | urological manifestations C0520679 | obstructive sleep apnea C0409325 | patellofemoral disorders C0376293 | stigmata C0311338 | fundus albipunctatus C0270790 | quadriparesis C0270680 | brainstem compression C0266798 | cord compression C0265673 | kyphosis C0235031 | neurological symptoms C0221166 | paraparesis C0158242 | cervical spinal cord compression C0155288 | papilledema C0149645 | cervical myelopathy C0080178 | spinal dysraphism C0040997 | trigeminal neuralgia C0039145 | syringomyelia C0037944 | spinal stenosis C0037926 | spinal cord compression C0030486 | paraplegia C0029166 | oral manifestations C0027765 | neurological disorders C0026269 | mitral valve stenosis C0022680 | polycystic kidney disease C0019080 | hemorrhage C0013336 | dwarfism C0013261 | duane retraction syndrome C0007815 | cerebrospinal fluid rhinorrhea |
Text Mined Symptom | UMLS | Name | Sentences' Count(Total Symptoms:7) C0009814 | stenosis | 7 C0037944 | spinal stenosis | 3 C0020255 | hydrocephalus | 2 C0030486 | paraplegia | 1 C0013336 | dwarfism | 1 C0022821 | kyphosis | 1 C0029166 | oral manifestations | 1 |
Manually Genotype(Total Text Mining Genotypes:0) |
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(Waiting for update.) |
All Snps(Total Genotypes:42) | |||||||||||||
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snpId | pubmedId | geneId | geneSymbol | diseaseId | sourceId | sentence | score | Year | geneSymbol_dbSNP | CHROMOSOME | POS | REF | ALT |
rs121913105 | 10377013 | 2261 | FGFR3 | umls:C0001080 | BeFree | We previously discovered a novel missense mutation (Lys650Met) in the tyrosine kinase domain of the fibroblast growth factor receptor 3 (FGFR3) gene in four unrelated individuals with a condition we called severe achondroplasia with developmental delay and acanthosis nigricans (SADDAN) [Tavormina et al., 1999: Am. | 0.621035659 | 1999 | FGFR3 | 4 | 1806163 | A | C,T |
rs121913105 | 10053006 | 2261 | FGFR3 | umls:C0001080 | BeFree | We refer to the phenotype caused by the Lys650Met mutation as severe achondroplasia with developmental delay and acanthosis nigricans (SADDAN) because it differs significantly from the phenotypes of other known FGFR3 mutations. | 0.621035659 | 1999 | FGFR3 | 4 | 1806163 | A | C,T |
rs121913114 | NA | 2261 | FGFR3 | umls:C0001080 | CLINVAR | NA | 0.621035659 | NA | FGFR3 | 4 | 1801930 | A | T |
rs121913479 | 10587515 | 2261 | FGFR3 | umls:C0001080 | BeFree | Gly369Cys mutation in mouse FGFR3 causes achondroplasia by affecting both chondrogenesis and osteogenesis. | 0.621035659 | 1999 | FGFR3 | 4 | 1804362 | G | T |
rs121918495 | 9780920 | 2261 | FGFR3 | umls:C0001080 | BeFree | Gene analysis of these patients showed a T341P mutation in the FGFR2 gene in the patient with Pfeiffer syndrome, and a G380R mutation in the FGFR3 gene in the patient with achondroplasia. | 0.621035659 | 1998 | FGFR2 | 10 | 121517382 | T | G |
rs267606809 | NA | 2261 | FGFR3 | umls:C0001080 | CLINVAR | NA | 0.621035659 | NA | FGFR3 | 4 | 1804384 | T | G |
rs28931614 | NA | 2261 | FGFR3 | umls:C0001080 | CLINVAR | NA | 0.621035659 | NA | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 10979354 | 2261 | FGFR3 | umls:C0001080 | BeFree | A recurrent glycine to arginine mutation at codon 380 (G380R) in the transmembrane domain of the fibroblast growth factor receptor 3 gene was found to cause achondroplasia among different populations. | 0.621035659 | 2000 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 20963478 | 2261 | FGFR3 | umls:C0001080 | BeFree | We developed a quantitative fluorescent-polymerase chain reaction (QF-PCR) method suitable for detection of the FGFR3 mutation (G1138A) causing achondroplasia. | 0.621035659 | 2011 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 9780920 | 2261 | FGFR3 | umls:C0001080 | BeFree | Gene analysis of these patients showed a T341P mutation in the FGFR2 gene in the patient with Pfeiffer syndrome, and a G380R mutation in the FGFR3 gene in the patient with achondroplasia. | 0.621035659 | 1998 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 10360393 | 2261 | FGFR3 | umls:C0001080 | BeFree | The mother has achondroplasia and carries the common G1138 (G380R) mutation in the FGFR3 gene; the father has hypochondroplasia due to the C1620A (N540K) mutation in the same gene. | 0.621035659 | 1999 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 12921294 | 2261 | FGFR3 | umls:C0001080 | BeFree | Achondroplasia in Turkey is defined by recurrent G380R mutation of the FGFR3 gene. | 0.621035659 | 2003 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 18199430 | 2261 | FGFR3 | umls:C0001080 | BeFree | Genotyping of the G1138A mutation of the FGFR3 gene in patients with achondroplasia using high-resolution melting analysis. | 0.621035659 | 2008 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 10881785 | 2261 | FGFR3 | umls:C0001080 | BeFree | FGFR3 gene mutation (Gly380Arg) with achondroplasia and i(21q) Down syndrome: phenotype-genotype correlation. | 0.621035659 | 2000 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 10360392 | 2261 | FGFR3 | umls:C0001080 | BeFree | The father has achondroplasia due to the common G1138A (G380R) mutation in the fibroblast growth factor receptor 3 (FGFR3) gene, while the mother has hypochondroplasia due to the C1620G (N450K) mutation in the FGFR3 gene. | 0.621035659 | 1999 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 10611230 | 2261 | FGFR3 | umls:C0001080 | UNIPROT | We propose that the achondroplasia mutation G380R uncouples ligand-mediated receptor activation from down-regulation at a site where the levels and kinetics of FGFR3 signals are crucial for chondrocyte maturation and bone formation. | 0.621035659 | 2000 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 11556601 | 2261 | FGFR3 | umls:C0001080 | BeFree | A glycine to arginine mutation at codon 380 (G380R) of the fibroblast growth factor receptor 3 gene (FGFR3) was found to be the most common cause of achondroplasia in various populations. | 0.621035659 | 2001 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 22339077 | 2261 | FGFR3 | umls:C0001080 | BeFree | Rapid detection of G1138A and G1138C mutations of the FGFR3 gene in patients with achondroplasia using high-resolution melting analysis. | 0.621035659 | 2012 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 9001669 | 2261 | FGFR3 | umls:C0001080 | BeFree | Achondroplasia in Sweden caused by the G1138A mutation in FGFR3. | 0.621035659 | 1996 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 12297284 | 2261 | FGFR3 | umls:C0001080 | BeFree | Here we compared the ubiquitylation of either wild type or a K508A 'kinase-dead' mutant of fibroblast growth factor receptor 3 (FGFR3) with that of its naturally occurring overactive mutants, G380R as in achondroplasia, or K650E involved in thanatophoric dysplasia. | 0.621035659 | 2002 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 17466614 | 2261 | FGFR3 | umls:C0001080 | BeFree | Furthermore, a G380R mutation in FGFR3 (FGFR3(Ach)), which results in achondroplasia, induces apoptosis in the chondrogenic cell line ATDC5. | 0.621035659 | 2007 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 21739570 | 2261 | FGFR3 | umls:C0001080 | BeFree | The most common mutation for achondroplasia (FGFR3 Gly380Arg, resulting in 1138G>A) was identified. | 0.621035659 | 2011 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 8682509 | 2261 | FGFR3 | umls:C0001080 | BeFree | Our results support the argument that the G380R mutation of FGFR-3 is the most frequent mutation causing achondroplasia across different populations. | 0.621035659 | 1996 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 16475234 | 2261 | FGFR3 | umls:C0001080 | BeFree | The most common G380R FGFR3 achondroplasia mutation was detected. | 0.621035659 | 2006 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 18196933 | 2261 | FGFR3 | umls:C0001080 | BeFree | Down syndrome and achondroplasia were confirmed by karyotyping and presence of a common fibroblast growth factor receptor 3 mutation (Gly380Arg), respectively. | 0.621035659 | 2008 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 23949953 | 2261 | FGFR3 | umls:C0001080 | BeFree | The most common achondroplasia mutation, a p.Gly380Arg in the fibroblast growth factor receptor 3 (FGFR3) gene, was detected. | 0.621035659 | 2013 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 11518810 | 2261 | FGFR3 | umls:C0001080 | BeFree | A mouse model for achondroplasia was generated by introducing the human mutation (glycine 380-arginine) into the mouse fibroblast growth factor receptor 3 (G374R) by a knock-in approach using gene targeting leading to a constitutively active receptor. | 0.621035659 | 2001 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 23056398 | 2261 | FGFR3 | umls:C0001080 | BeFree | The Gly380Arg mutation in FGFR3 is the genetic cause for achondroplasia (ACH), the most common form of human dwarfism. | 0.621035659 | 2012 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 7847369 | 2261 | FGFR3 | umls:C0001080 | BeFree | Achondroplasia is defined by recurrent G380R mutations of FGFR3. | 0.621035659 | 1995 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 17683901 | 2261 | FGFR3 | umls:C0001080 | BeFree | An improved tetra-primer PCR approach for the detection of the FGFR3 G380R mutation responsible for achondroplasia. | 0.621035659 | 2008 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 9853502 | 2261 | FGFR3 | umls:C0001080 | BeFree | To determine whether the genotype could be distinguished on the basis of the phenotype, we analysed height, arm span, and skeletal radiographs from 23 patients with achondroplasia and the G380R mutation of FGFR3 and eight with hypochondroplasia and the N540K mutation. | 0.621035659 | 1998 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 16434832 | 2261 | FGFR3 | umls:C0001080 | BeFree | Accurate diagnosis of a homozygous G1138A mutation in the fibroblast growth factor receptor 3 gene responsible for achondroplasia. | 0.621035659 | 2006 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 11472579 | 2261 | FGFR3 | umls:C0001080 | BeFree | Achondroplasia is a skeletal dysplasia caused by substitution of arginine for glycine at codon 380 (G380R) mutation of the fibroblast growth factor receptor 3. | 0.621035659 | 2001 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931614 | 10102070 | 2261 | FGFR3 | umls:C0001080 | BeFree | In the present study, 70 of 75 Japanese patients with achondroplasia were found to have a G1138A mutation in FGFR3, and two patients had a G1138C mutation. | 0.621035659 | 1999 | FGFR3 | 4 | 1804392 | G | A,C |
rs28931615 | 11426459 | 2261 | FGFR3 | umls:C0001080 | BeFree | Subtle radiographic findings of achondroplasia in patients with Crouzon syndrome with acanthosis nigricans due to an Ala391Glu substitution in FGFR3. | 0.621035659 | 2001 | FGFR3 | 4 | 1804426 | C | A |
rs28933068 | 9853502 | 2261 | FGFR3 | umls:C0001080 | BeFree | To determine whether the genotype could be distinguished on the basis of the phenotype, we analysed height, arm span, and skeletal radiographs from 23 patients with achondroplasia and the G380R mutation of FGFR3 and eight with hypochondroplasia and the N540K mutation. | 0.621035659 | 1998 | FGFR3 | 4 | 1805644 | C | A,G,T |
rs28933068 | 10360392 | 2261 | FGFR3 | umls:C0001080 | BeFree | The father has achondroplasia due to the common G1138A (G380R) mutation in the fibroblast growth factor receptor 3 (FGFR3) gene, while the mother has hypochondroplasia due to the C1620G (N450K) mutation in the FGFR3 gene. | 0.621035659 | 1999 | FGFR3 | 4 | 1805644 | C | A,G,T |
rs28933068 | 10360393 | 2261 | FGFR3 | umls:C0001080 | BeFree | The mother has achondroplasia and carries the common G1138 (G380R) mutation in the FGFR3 gene; the father has hypochondroplasia due to the C1620A (N540K) mutation in the same gene. | 0.621035659 | 1999 | FGFR3 | 4 | 1805644 | C | A,G,T |
rs386626606 | 11518810 | 2261 | FGFR3 | umls:C0001080 | BeFree | A mouse model for achondroplasia was generated by introducing the human mutation (glycine 380-arginine) into the mouse fibroblast growth factor receptor 3 (G374R) by a knock-in approach using gene targeting leading to a constitutively active receptor. | 0.621035659 | 2001 | NA | NA | NA | NA | NA |
rs75790268 | NA | 2261 | FGFR3 | umls:C0001080 | CLINVAR | NA | 0.621035659 | NA | FGFR3 | 4 | 1804377 | G | T |
rs75790268 | 11518810 | 2261 | FGFR3 | umls:C0001080 | BeFree | A mouse model for achondroplasia was generated by introducing the human mutation (glycine 380-arginine) into the mouse fibroblast growth factor receptor 3 (G374R) by a knock-in approach using gene targeting leading to a constitutively active receptor. | 0.621035659 | 2001 | FGFR3 | 4 | 1804377 | G | T |
rs78311289 | 12297284 | 2261 | FGFR3 | umls:C0001080 | BeFree | Here we compared the ubiquitylation of either wild type or a K508A 'kinase-dead' mutant of fibroblast growth factor receptor 3 (FGFR3) with that of its naturally occurring overactive mutants, G380R as in achondroplasia, or K650E involved in thanatophoric dysplasia. | 0.621035659 | 2002 | FGFR3 | 4 | 1806162 | A | C,G |
GWASdb Annotation(Total Genotypes:0) | |
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(Waiting for update.) |
GWASdb Snp Trait(Total Genotypes:0) | |
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(Waiting for update.) |
Mapped by lexical matching(Total Items:1) | ||||
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HP ID | HP Name | MP ID | MP Name | Annotation |
HP:0000113 | Polycystic kidney dysplasia | MP:0003606 | kidney failure;HP:0002092 | Pulmonary hypertension |
Mapped by homologous gene(Total Items:1) | ||||
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HP ID | HP Name | MP ID | MP Name | Annotation |
HP:0000113 | Polycystic kidney dysplasia | MP:0011250 | abdominal situs ambiguus;HP:0001085 | Papilledema |
Chemical(Total Drugs:0) | |
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FDA approved drug and dosage information(Total Drugs:0) | |
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FDA labeling changes(Total Drugs:0) | |
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