Search cg05778424 in SARC (Sarcoma)

Summary
CpGcg05778424
Locationchr17 : 55169508
Strand+
Entrez GeneID8165
Gene SymbolAKAP1
RefGeneNM_003488
Relation To IslandOpenSea
Genomic Group5'UTR

Enhancers overlap with cg05778424

 


cis-meQTL for cg05778424 in SARC

 

meQTL data were obtained from Pancan-meQTL database



trans-meQTL for cg05778424 in SARC

 

meQTL data were obtained from Pancan-meQTL database



Differentially Variable and differentially Methylated CpGs (DVMCs) for cg05778424 in SARC

 

Definition of differentially methylated CpGs: |difference|>0.2 & indepedent Student's t-test adjusted p-value <= 0.05

Definition of differentially variable CpGs: Bartlett's test adjusted p-value <= 0.05

Scatter plot for DVMC

 
Scatter plot of DNAm profile for cg05778424 in SARC

pathway-meQTL for cg05778424 in SARC

 

e-mQTL for cg05778424 in SARC

 

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Citation: [1] Ding, Wubin, Geng Chen, and Tieliu Shi. "Integrative analysis identifies potential DNA methylation biomarkers for pan-cancer diagnosis and prognosis." Epigenetics 14.1 (2019): 67-80.[ Full Text ]

Citation: [2] Wubin Ding, Jiwei Chen, Guoshuang Feng, Geng Chen, Jun Wu, Yongli Guo, Xin Ni, Tieliu Shi, DNMIVD: DNA methylation interactive visualization database, Nucleic Acids Research, 48(D1), D856-D862.[ Full Text ]

Citation: [3] Ding, W., Feng, G., Hu, Y., Chen, G., & Shi, T. (2020). Co-occurrence and mutual exclusivity analysis of DNA methylation reveals distinct subtypes in multiple cancers. Frontiers in cell and developmental biology, 8, 20.[ Full Text ]